CmaCh11G011580.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G011580.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Chorismate mutase
Location	Cma_Chr11: 6701452 .. 6706562 (+)
Sequence length	1311
RNA-Seq Expression	CmaCh11G011580.1
Synteny	CmaCh11G011580.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCCATTTCTGTTCTTTTTCTCCTCCTTTTCATCGCTCCATTGCTTAACTTCTTCGATACTGTTTCAATGGAGATGGAGGCAAAAATTTTGAGAACGGCCCCATCTATTCACTCGCTTCGATTACGTTCTCGTCCAAGATGTTCTTTGTTCGTCCATCGGATGCCCGCAACCAGTTCGAAGTATTGCTCGAGTGTGCTGAGATGCGGCCTTCGCCCTGTTCAAGCTTCTTCCGCTTCCACCGGGTATATACACGACAATCCTTTGACGAATCTTGTTGTTTGGTTCTTCTTTCTATGCCTACTACTTACTTTGCCGTCTGATTTGTTATGCTCGCCAAATTCTTGTGGTGTTGTCTTCAATTTGCTTCTTTTCGTTAGATGCAAATGCTCAAGTACAACTTTCCATTGTCGTTGGATGTTAGATTTTTGGATTTGGTGACATGGTAATTAGGAAAGGGAGGCGGTTGTTTTAGGCGACTGCTGTTTATGTATACAATTATAACACATATTCAGTCAACTCTTTGTGCTTCTATTAGGTTCTGAGCATATACATTCTAGATTGAATTACCAAATGTATCCTCTCAATTTTGATGGTCGTGTTTGTGTAGTTCTTAAATTTTAAAAAGGTTTCAATCAAGTTAATCAAGTTGCTTCACTTTGAATTTTGATTTTATGTAATGTGTTTTAACATCAAACAAAAGTAAGTGGAAAACTGGACAAAATAGAGTGGCACAACCAAAAAAAGAGTTTCAAAAAGTTGTTTCAAAAGGAGGTATGTTGTATGTGCCATTTTATTTTGTTCAACTATCCAATTTCTTCTTCTAATGCCATGAAAATTAGTTGTTTTTGTTATAAACATCTTATGTTATTTTTAAGTTAATGACAATCAATAATAGGACAATGTAGAATTTGGATGGAAGATAATAGGACTACGTTGAATTACAGTTCAAAGTTTGAGAGCATATTGAAACCTTTTAGAGTTTTAAGCCTCAGAAGCATAATAATGAAAGTTCATGATATAAACAATGTCCTGTGTTAAAGAACTTTGTTGCCCTTTGCATGACATTTGTTTACACAATCTTATGTTTTTAGGCATGGCCAAAGTCCATTAAAATTACGTCATCATATCTATTTTGTATGCCACTTGTCTAGAAAGGTTCCGCAAGGTGCTTGACAATACTTGTAAAAGAAAATGTTTTTAAAAGTAAGGCTATCTGGTCCATTTGAGGCGTCTCTATGATTTCCTCGACTTAGAGACCCTTGCTGCATTTTCTTACAAGCTAGAGAGTAATTCTTGTAGGTTGAAGGATCTAAAATCCCTTTGCTTTTCGTTCTTTTCCTCCTCAATTAATTGAAATTGGATTGCTGTAGACCACTAGCAAGGAAGAAACGGGTGGACATGAGTGAGACCTTGACCCTCGAGAGTATAAGATTTTCATTAATCATTCAGGAGGACAGCATAATATTCAATCTTATGGAGAGAGCACAGTATTGTTACAATGCCAATACTTATGACCGGGATGCTTTTGTTATGGATGGGTTTCATGGTTCTTTGGTAGAGTATATGGTCAAAGAAACTGAAAAGCTTCATGCTCAGGTATGCGAGAAGACAGAAACTTTAGTAAAAGTTAAGATGTAAAATAATGAGAGGAAGGTTTCATGTTCATCGGATTTTCTGCTTAACAACAATCTGTTTCATGCTAGGTGGGTAGATACAAAAGCCCTGATGAACATCCTTTTTTCCCAAATGACTTGCCGGAACCACTATTGCCTCCGATGCAGTATCCTCAGGTAAACTTAAACTCGCATTTGCTATTAAAATTGTTTGTCCTTAAAACATTTCCAAACAAATCTACATGTTTCGTTAGTCTATTCAATTTAGTAGCAGCCACCATTCAAAAAGTGGGGACCACATTCGCTTACGATCATGATCTCATTCTTCTTTCCTATTTTGAACACCTTCCCTCCATGGTACCCTTTTCTTTCAAAATGATGTGGTTGCCCCTATGGAAATTTAGAACTCAAAGTTGTGAAACAAAAGAATGCAACATTCTATTGACTTGATATAATATATTTCAAGATTCTAAATACATCTCAGAGGAAAAGCTCCCTAACCTTAATAATCAGAGAAGGGCAAGCCAGACCCTTAAGAGAAATTTGAAAATTGGTAACATATACTATTGCTGGTTTAATGATTCTCACATTGGCTATGTTGTCACAAAATCTTACTTATGATAAATAGCTGTGTTTCGTTAATAGTTTCATTGGTCCATCCTATTTCCACAATTCTAACTTCTCAAATTGAAATATTTGAACTCTTCTGCAACCATTTCCCCACAAAACCAGGCTAATTGTCTAGCCATGTATGTTATATATGGCCATGCCTCAGGGCATATTGATCGAGGTGGATTTTCTTTTTTCCTTCTTTTGATCAATCAAAGCCTGGAATCCTCTCTGGTAAATATCTTTTAAGGATGCTTGGAGTTATGCTCATCTTGAGTTGGTCTCCATAATACGTTCTACAGTATATTTCACTATGATTGAGCTTAAAAATAAAAAAGAAATCTTAGTATGTAACTGATAACATAACATCTGAGCAATGCTCTTGAAATCGGGCTCGATATTGTAAATGGTTCTGTTGCTCTGTTTTCTTATATGTCAACTACTTATGTGGCGAACAGGTACTACATCCAGTTGCAGATTCGATTAACATCAATCCAAAAGTATGGGACATGTACTTTAGGGATCTCATTCCTAGATTAGTGAAGGAAGGAGATGATGGGAATTGTGGATCAAGTGCTGTTTGCGACACATTGTGTTTGCAGGTGTGCCTTTCAACCAATCCATTTCATGAATCATGTTCTTGTTAAAGGAAAGGCTAAATTAATAAAAATACCTCTTAACGTTGCACTTTGTCTTGAACTTTCAAAAGTTTAAAGTTTTAATAATACCTTTAAACTTTCAAAAAGTCTAAAAAATAACCTTAAACTTTAAAACAAAGTTAAAAAATACCCTTACAGTTGGTTTTGGATGAAAACCGTTAATACTTTGTTTCAAAAATACTCTTGAACTTTTAAAAGTGTTTCAAAAATACCTTTTAACTTTAAAAAGTGTTCAAAAAGTGTCGTTTAGTTTTCAAAAGTTTCATTAATACCCTTAAACCTTTTTAAAAACTTTAAAAATACCTTTAAACTTTTTTTAAAAGTTCAAAAATACTCATCATAAATACCATGCTTCAAAATACTCCTAAGCTTTCAAAAGTAACATTAAAAGTTTGGAGACAATTTATGAGGTGTTGATGAACGGTTTCCATCCATATATTGACGGGAAGAACTTTTTCTGTTTTTTTTTATATAAAGGTGGTGTTAATGTTATTTTTAAAATTTTATGGGTGTTTTTTAAACAAAGTACTAACGACAAGAGTATTTTTTTAACTTTTTTTAAAAGTCGAAGGAAACGTTCTAAAGTTCAGGGGTATTTTTGAAATAAAGTACTAACGATTTCTATCCAAAATTAACGGCAAGAGTATCTTTTAGATTTTTTTGAAAGTGGTATTATTAAAACTTTTGAAAGTTTAGGGGCATTTTTTGAGACAAAGTGCAAGGTTTAGGAGTATTTTTCAATTAATTTAGCCTAAAATAAATATTAAGATAAAAATAAAAAAGAGGACAAACAACAAAAGAATTAGATAGCTAGCATAATAACAAATTTGTTGTCCTCTATGCGGCAATAATCTTGTATATTCCAGACTTTACAACATTGAGCCACGTTTCTTGTCTTCATATATGTTATGTGCTGCTCAGCTGTTGAAGTTATATCTCATTTCACTAACTTTACTCAAAATTTCAATATTAGATTTTTCCTGTATAAATGTGGCCTATGGTACATAAATCAGCATTTCAATTTTATGGGATGCCATCGAAGGGACTTACGGTCTCTATGTCATCCTCTAGACTTCGTTTGCAGTGTTTGAGTCGAGCCAATTTTAGGCGATTTTAGATTTCATCTGGGTTATGTTATTAAAAACCATCAGGTTAGTTGTTTTCAAGAAGCATTTCCTTTTTATTCCACTTTCTTTAGTTTGCTGGTCTTGCTGCTACCAGTTTAACGTGATCTGGATTCTTTTATTGGTTACTAGAAAATCGAAATCACCTAATCCTCTCTCGTTGTATTAGTTTACTTTACTGACTTAAAAATGGGAAGTCTAAGTCGAATATTGGGACAAGCACATTAATAAGAGACAAATATATCGATACTTAGGCCCCGTTAGATAACTATTTAATTTCTTTTTTTCTGCTTTAAATGTCGCAAAATTAAGTACACAAGATATTCACCGATTATGCATAAACATCACGTTGATCAACATGACAATCTCCAAGAATTGTATGAATGAATTCCTTGCTTTGGCAGGCTTTATCAAAGAGAATCCATTATGGAAAATTCGTAGCAGAAGCTAAGTTTCGAGCCTCACCGGAGGCGTATGAAGCAGCTATTAGAGCACAGGTAAACAAACTCAAACCAGATGGAACCCTCCAGCTGACTCTTTTCTGGATTTTCATTCATTAACTTTTTCCTTGTGTAAAATTTTCAAAGGATAAGCAAAAACTGATGGATATCTTGACATACCCGACGGTGGAGGAGGTTGTGAAAAGGCGAGTGGAGATGAAAGCAACGGTTTATGGACAAGAGGTAACGACCGATGCACCGAAAGCTGAATCCCGAGCAACTTATAAGATCAAACCCAGCTTGGTTGCTGATCTATATGGGGATTGGATCATGCCATTGACTAAGGAAGTTCAAGTTCAATATTTATTAAGAAGATTGGATTGATGATCTTACTTAAATCTCCGAAGCCAAGTTGAAGCTGTGTTTGGTCTTGGAACTGCTGACTTGTTTTTGCAGCTAACTTAATTTGTGTCAGATGGTTTAGCACCAGATTTTCTAAGTTATCTGATCTTTTCAATGTCGGATACAAAAATGGGTGAATTAAAACGCCCTTTTGTAGATTTTATCACGATAAACTTTATTCATTTTTTAACTCGAATTAGAATAGAGGATTAGTGAACTTTCAACCTATTAAAAGAAGCTACCGATGAACAATGAACTACG

mRNA sequence

CTTTCCATTTCTGTTCTTTTTCTCCTCCTTTTCATCGCTCCATTGCTTAACTTCTTCGATACTGTTTCAATGGAGATGGAGGCAAAAATTTTGAGAACGGCCCCATCTATTCACTCGCTTCGATTACGTTCTCGTCCAAGATGTTCTTTGTTCGTCCATCGGATGCCCGCAACCAGTTCGAAGTATTGCTCGAGTGTGCTGAGATGCGGCCTTCGCCCTGTTCAAGCTTCTTCCGCTTCCACCGGACCACTAGCAAGGAAGAAACGGGTGGACATGAGTGAGACCTTGACCCTCGAGAGTATAAGATTTTCATTAATCATTCAGGAGGACAGCATAATATTCAATCTTATGGAGAGAGCACAGTATTGTTACAATGCCAATACTTATGACCGGGATGCTTTTGTTATGGATGGGTTTCATGGTTCTTTGGTAGAGTATATGGTCAAAGAAACTGAAAAGCTTCATGCTCAGGTGGGTAGATACAAAAGCCCTGATGAACATCCTTTTTTCCCAAATGACTTGCCGGAACCACTATTGCCTCCGATGCAGTATCCTCAGGTACTACATCCAGTTGCAGATTCGATTAACATCAATCCAAAAGTATGGGACATGTACTTTAGGGATCTCATTCCTAGATTAGTGAAGGAAGGAGATGATGGGAATTGTGGATCAAGTGCTGTTTGCGACACATTGTGTTTGCAGGCTTTATCAAAGAGAATCCATTATGGAAAATTCGTAGCAGAAGCTAAGTTTCGAGCCTCACCGGAGGCGTATGAAGCAGCTATTAGAGCACAGGATAAGCAAAAACTGATGGATATCTTGACATACCCGACGGTGGAGGAGGTTGTGAAAAGGCGAGTGGAGATGAAAGCAACGGTTTATGGACAAGAGGTAACGACCGATGCACCGAAAGCTGAATCCCGAGCAACTTATAAGATCAAACCCAGCTTGGTTGCTGATCTATATGGGGATTGGATCATGCCATTGACTAAGGAAGTTCAAGTTCAATATTTATTAAGAAGATTGGATTGATGATCTTACTTAAATCTCCGAAGCCAAGTTGAAGCTGTGTTTGGTCTTGGAACTGCTGACTTGTTTTTGCAGCTAACTTAATTTGTGTCAGATGGTTTAGCACCAGATTTTCTAAGTTATCTGATCTTTTCAATGTCGGATACAAAAATGGGTGAATTAAAACGCCCTTTTGTAGATTTTATCACGATAAACTTTATTCATTTTTTAACTCGAATTAGAATAGAGGATTAGTGAACTTTCAACCTATTAAAAGAAGCTACCGATGAACAATGAACTACG

Coding sequence (CDS)

ATGGAGATGGAGGCAAAAATTTTGAGAACGGCCCCATCTATTCACTCGCTTCGATTACGTTCTCGTCCAAGATGTTCTTTGTTCGTCCATCGGATGCCCGCAACCAGTTCGAAGTATTGCTCGAGTGTGCTGAGATGCGGCCTTCGCCCTGTTCAAGCTTCTTCCGCTTCCACCGGACCACTAGCAAGGAAGAAACGGGTGGACATGAGTGAGACCTTGACCCTCGAGAGTATAAGATTTTCATTAATCATTCAGGAGGACAGCATAATATTCAATCTTATGGAGAGAGCACAGTATTGTTACAATGCCAATACTTATGACCGGGATGCTTTTGTTATGGATGGGTTTCATGGTTCTTTGGTAGAGTATATGGTCAAAGAAACTGAAAAGCTTCATGCTCAGGTGGGTAGATACAAAAGCCCTGATGAACATCCTTTTTTCCCAAATGACTTGCCGGAACCACTATTGCCTCCGATGCAGTATCCTCAGGTACTACATCCAGTTGCAGATTCGATTAACATCAATCCAAAAGTATGGGACATGTACTTTAGGGATCTCATTCCTAGATTAGTGAAGGAAGGAGATGATGGGAATTGTGGATCAAGTGCTGTTTGCGACACATTGTGTTTGCAGGCTTTATCAAAGAGAATCCATTATGGAAAATTCGTAGCAGAAGCTAAGTTTCGAGCCTCACCGGAGGCGTATGAAGCAGCTATTAGAGCACAGGATAAGCAAAAACTGATGGATATCTTGACATACCCGACGGTGGAGGAGGTTGTGAAAAGGCGAGTGGAGATGAAAGCAACGGTTTATGGACAAGAGGTAACGACCGATGCACCGAAAGCTGAATCCCGAGCAACTTATAAGATCAAACCCAGCTTGGTTGCTGATCTATATGGGGATTGGATCATGCCATTGACTAAGGAAGTTCAAGTTCAATATTTATTAAGAAGATTGGATTGA

Protein sequence

MEMEAKILRTAPSIHSLRLRSRPRCSLFVHRMPATSSKYCSSVLRCGLRPVQASSASTGPLARKKRVDMSETLTLESIRFSLIIQEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSLVEYMVKETEKLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWDMYFRDLIPRLVKEGDDGNCGSSAVCDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIRAQDKQKLMDILTYPTVEEVVKRRVEMKATVYGQEVTTDAPKAESRATYKIKPSLVADLYGDWIMPLTKEVQVQYLLRRLD

Homology

[Close]

BLAST of CmaCh11G011580.1 vs. ExPASy Swiss-Prot
Match: D2CSU4 (Chorismate mutase 1, chloroplastic OS=Petunia hybrida OX=4102 GN=CM1 PE=1 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 7.5e-119
Identity = 208/280 (74.29%), Postives = 239/280 (85.36%), Query Frame = 0


Query: 41  SSVLRCGLRPVQASSASTGPLARKKRVDMSETLTLESIRFSLIIQEDSIIFNLMERAQYC 100
           SS ++ G+RP+QAS+ S G L  K RVD +E+ TL+ IR SLI QEDSIIF+L+ERAQYC
Sbjct: 46  SSSIKHGIRPLQASATSLG-LGNKNRVDETESYTLDGIRHSLIRQEDSIIFSLVERAQYC 105

Query: 101 YNANTYDRDAFVMDGFHGSLVEYMVKETEKLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQ 160
           YNA TYD D F MDGFHGSLVEY+V+ETEKLHA VGRYKSPDEHPFFP  LPEP+LPPMQ
Sbjct: 106 YNAETYDPDVFAMDGFHGSLVEYIVRETEKLHATVGRYKSPDEHPFFPKVLPEPVLPPMQ 165

Query: 161 YPQVLHPVADSININPKVWDMYFRDLIPRLVKEGDDGNCGSSAVCDTLCLQALSKRIHYG 220
           YP+VLHP+ADSININ K+W+MYF +L+PRLVKEGDDGN GS+AVCDT+C+QALSKRIHYG
Sbjct: 166 YPKVLHPIADSININVKIWEMYFENLLPRLVKEGDDGNYGSTAVCDTICVQALSKRIHYG 225

Query: 221 KFVAEAKFRASPEAYEAAIRAQDKQKLMDILTYPTVEEVVKRRVEMKATVYGQEVTTDAP 280
           KFVAEAK+RASPE Y AAIRAQD+  LMD+LTYP VEE +KRRVE+K   YGQE+  + P
Sbjct: 226 KFVAEAKYRASPEVYNAAIRAQDRNGLMDLLTYPAVEEAIKRRVEIKTRTYGQELHINGP 285

Query: 281 KAESRATYKIKPSLVADLYGDWIMPLTKEVQVQYLLRRLD 321
           +      YKIKPSLVA+LYGDWIMPLTKEVQVQYLLRRLD
Sbjct: 286 ENGGDPVYKIKPSLVAELYGDWIMPLTKEVQVQYLLRRLD 324

[Close]

BLAST of CmaCh11G011580.1 vs. ExPASy Swiss-Prot
Match: P42738 (Chorismate mutase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM1 PE=1 SV=3)

HSP 1 Score: 407.5 bits (1046), Expect = 1.4e-112
Identity = 208/303 (68.65%), Postives = 238/303 (78.55%), Query Frame = 0


Query: 32  MPATSSKY---CS----SVLRCGLRPVQASSASTGPLARKKRVDMSETLTLESIRFSLII 91
           +P+T S +   CS    S  R G   V A     G L  KKRVD SE+LTLE IR SLI 
Sbjct: 38  LPSTKSSFSVRCSLPQPSKPRSGTSSVHAVMTLAGSLTGKKRVDESESLTLEGIRNSLIR 97

Query: 92  QEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSLVEYMVKETEKLHAQVGRYKSPDEH 151
           QEDSIIF L+ERA+YCYNA+TYD  AF MDGF+GSLVEYMVK TEKLHA+VGR+KSPDEH
Sbjct: 98  QEDSIIFGLLERAKYCYNADTYDPTAFDMDGFNGSLVEYMVKGTEKLHAKVGRFKSPDEH 157

Query: 152 PFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWDMYFRDLIPRLVKEGDDGNCGSSAV 211
           PFFP+DLPEP+LPP+QYP+VLH  ADSININ K+W+MYFRDL+PRLVK+GDDGN GS+AV
Sbjct: 158 PFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVKKGDDGNYGSTAV 217

Query: 212 CDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIRAQDKQKLMDILTYPTVEEVVKRRV 271
           CD +CLQ LSKRIHYGKFVAEAKF+ASPEAYE+AI+AQDK  LMD+LT+PTVE+ +K+RV
Sbjct: 218 CDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRV 277

Query: 272 EMKATVYGQEVTTDAPKAESRA-------TYKIKPSLVADLYGDWIMPLTKEVQVQYLLR 321
           EMK   YGQEV     + E           YKI P LV DLYGDWIMPLTKEVQV+YLLR
Sbjct: 278 EMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMPLTKEVQVEYLLR 337

[Close]

BLAST of CmaCh11G011580.1 vs. ExPASy Swiss-Prot
Match: Q9C544 (Chorismate mutase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM3 PE=1 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.5e-106
Identity = 204/320 (63.75%), Postives = 252/320 (78.75%), Query Frame = 0


Query: 3   MEAKILRTAPSIHSLRLRSRPRCSLFVHRMPATSSKYCSSV-LRCGLRPVQASSASTGPL 62
           MEAK+L+  P+ ++    +    S  + R+   + K  S V L  G   ++ S+AS    
Sbjct: 1   MEAKLLK--PAFYNSPNLNLTNSSRLISRLSIWNDK--SKVGLSSGSLFLRLSAASPIRY 60

Query: 63  AR-KKRVDMSETLTLESIRFSLIIQEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSL 122
           +R   RVD SE L LESIR SLI QEDSIIFNL+ERAQY YNA+TYD DAF M+GF GSL
Sbjct: 61  SRGLLRVDESEYLKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYDEDAFTMEGFQGSL 120

Query: 123 VEYMVKETEKLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWD 182
           VE+MV+ETEKLHA+V RYKSPDEHPFFP  LPEP+LPP+QYPQVLH  A+SININ KVW+
Sbjct: 121 VEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKVWN 180

Query: 183 MYFRDLIPRLVKEGDDGNCGSSAVCDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIR 242
           MYF+ L+PRLVK GDDGNCGS+A+CDT+CLQ LSKRIH+GKFVAEAKFR +P AYE AI+
Sbjct: 181 MYFKHLLPRLVKPGDDGNCGSAALCDTMCLQILSKRIHFGKFVAEAKFRENPAAYETAIK 240

Query: 243 AQDKQKLMDILTYPTVEEVVKRRVEMKATVYGQEVTTDAPKAESRATYKIKPSLVADLYG 302
            QD+ +LM +LTY TVEEVVK+RVE+KA ++GQ++T + P+ E+  +YKI+PSLVA LYG
Sbjct: 241 EQDRTQLMQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYG 300

Query: 303 DWIMPLTKEVQVQYLLRRLD 321
           + IMPLTKEVQ++YLLRRLD
Sbjct: 301 ERIMPLTKEVQIEYLLRRLD 316

[Close]

BLAST of CmaCh11G011580.1 vs. ExPASy Swiss-Prot
Match: B4FNK8 (Chorismate mutase 1, chloroplastic OS=Zea mays OX=4577 GN=CM1 PE=1 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 1.8e-104
Identity = 189/270 (70.00%), Postives = 221/270 (81.85%), Query Frame = 0


Query: 51  VQASSASTGPLARKKRVDMSETLTLESIRFSLIIQEDSIIFNLMERAQYCYNANTYDRDA 110
           ++A++ S  P+A+++RVD SE LTL+SIR  LI  EDSIIF L+ERAQ+CYNA+TYD +A
Sbjct: 43  LRAANNSATPVAKEERVDRSEILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNA 102

Query: 111 FVMDGFHGSLVEYMVKETEKLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQYPQVLHPVAD 170
           F MDGF GSLVEYMV+ETEKLHAQVGRYKSPDEHPFFP DLPEP LPPMQYP+VLHP+AD
Sbjct: 103 FHMDGFGGSLVEYMVRETEKLHAQVGRYKSPDEHPFFPEDLPEPRLPPMQYPRVLHPIAD 162

Query: 171 SININPKVWDMYFRDLIPRLVKEGDDGNCGSSAVCDTLCLQALSKRIHYGKFVAEAKFRA 230
           SININ ++W MYF +L+PRLVK+G DGN GSSA+CDT CLQALSKRIHYGKFVAEAKF+ 
Sbjct: 163 SININKEIWKMYFDELLPRLVKKGSDGNAGSSALCDTTCLQALSKRIHYGKFVAEAKFQE 222

Query: 231 SPEAYEAAIRAQDKQKLMDILTYPTVEEVVKRRVEMKATVYGQEVTTDAPKAESRATYKI 290
           SPEAY  AI AQD+ +LM +LTY TVE  ++ RVE KA ++GQEV        S   YKI
Sbjct: 223 SPEAYMPAIIAQDRDQLMHLLTYETVERAIEHRVEAKAKIFGQEVNIGVEDNGSPPVYKI 282

Query: 291 KPSLVADLYGDWIMPLTKEVQVQYLLRRLD 321
            PSLVA+LY   IMPLTKEVQ+ YLLRRLD
Sbjct: 283 VPSLVAELYSYRIMPLTKEVQIAYLLRRLD 312

[Close]

BLAST of CmaCh11G011580.1 vs. ExPASy Swiss-Prot
Match: Q9S7H4 (Chorismate mutase 2 OS=Arabidopsis thaliana OX=3702 GN=CM2 PE=1 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 5.8e-71
Identity = 131/252 (51.98%), Postives = 184/252 (73.02%), Query Frame = 0


Query: 70  SETLTLESIRFSLIIQEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSLVEYMVKETE 129
           S  L+L+ IR SLI QED+I+F+L+ERA++  N+  ++    +  G   SL E+ V+ETE
Sbjct: 14  SNVLSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFEESRCLDSGSFSSLTEFFVRETE 73

Query: 130 KLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWDMYFRDLIPR 189
            + A+VGRY+ P+E+PFF  ++P  + P  +YP  LHP A S+NIN ++WD+YF++L+P 
Sbjct: 74  IIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQIWDIYFKELLPL 133

Query: 190 LVKEGDDGNCGSSAVCDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIRAQDKQKLMD 249
            VK GDDGN  S+A  D  CLQALS+RIHYGKFVAE KFR +P+ YE AIRAQD++ LM 
Sbjct: 134 FVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYEPAIRAQDREALMK 193

Query: 250 ILTYPTVEEVVKRRVEMKATVYGQEVTTDAPKA-ESRATYKIKPSLVADLYGDWIMPLTK 309
           +LT+  VEE+VK+RV+ KA  +GQEV  ++    ES+  YK+ P L + +YG+W++PLTK
Sbjct: 194 LLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWLIPLTK 253

Query: 310 EVQVQYLLRRLD 321
            V+V+YLLRRLD
Sbjct: 254 LVEVEYLLRRLD 265

[Close]

BLAST of CmaCh11G011580.1 vs. TAIR 10
Match: AT3G29200.1 (chorismate mutase 1 )

HSP 1 Score: 407.5 bits (1046), Expect = 9.7e-114
Identity = 208/303 (68.65%), Postives = 238/303 (78.55%), Query Frame = 0


Query: 32  MPATSSKY---CS----SVLRCGLRPVQASSASTGPLARKKRVDMSETLTLESIRFSLII 91
           +P+T S +   CS    S  R G   V A     G L  KKRVD SE+LTLE IR SLI 
Sbjct: 38  LPSTKSSFSVRCSLPQPSKPRSGTSSVHAVMTLAGSLTGKKRVDESESLTLEGIRNSLIR 97

Query: 92  QEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSLVEYMVKETEKLHAQVGRYKSPDEH 151
           QEDSIIF L+ERA+YCYNA+TYD  AF MDGF+GSLVEYMVK TEKLHA+VGR+KSPDEH
Sbjct: 98  QEDSIIFGLLERAKYCYNADTYDPTAFDMDGFNGSLVEYMVKGTEKLHAKVGRFKSPDEH 157

Query: 152 PFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWDMYFRDLIPRLVKEGDDGNCGSSAV 211
           PFFP+DLPEP+LPP+QYP+VLH  ADSININ K+W+MYFRDL+PRLVK+GDDGN GS+AV
Sbjct: 158 PFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVKKGDDGNYGSTAV 217

Query: 212 CDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIRAQDKQKLMDILTYPTVEEVVKRRV 271
           CD +CLQ LSKRIHYGKFVAEAKF+ASPEAYE+AI+AQDK  LMD+LT+PTVE+ +K+RV
Sbjct: 218 CDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRV 277

Query: 272 EMKATVYGQEVTTDAPKAESRA-------TYKIKPSLVADLYGDWIMPLTKEVQVQYLLR 321
           EMK   YGQEV     + E           YKI P LV DLYGDWIMPLTKEVQV+YLLR
Sbjct: 278 EMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMPLTKEVQVEYLLR 337

[Close]

BLAST of CmaCh11G011580.1 vs. TAIR 10
Match: AT1G69370.1 (chorismate mutase 3 )

HSP 1 Score: 387.5 bits (994), Expect = 1.0e-107
Identity = 204/320 (63.75%), Postives = 252/320 (78.75%), Query Frame = 0


Query: 3   MEAKILRTAPSIHSLRLRSRPRCSLFVHRMPATSSKYCSSV-LRCGLRPVQASSASTGPL 62
           MEAK+L+  P+ ++    +    S  + R+   + K  S V L  G   ++ S+AS    
Sbjct: 1   MEAKLLK--PAFYNSPNLNLTNSSRLISRLSIWNDK--SKVGLSSGSLFLRLSAASPIRY 60

Query: 63  AR-KKRVDMSETLTLESIRFSLIIQEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSL 122
           +R   RVD SE L LESIR SLI QEDSIIFNL+ERAQY YNA+TYD DAF M+GF GSL
Sbjct: 61  SRGLLRVDESEYLKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYDEDAFTMEGFQGSL 120

Query: 123 VEYMVKETEKLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWD 182
           VE+MV+ETEKLHA+V RYKSPDEHPFFP  LPEP+LPP+QYPQVLH  A+SININ KVW+
Sbjct: 121 VEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKVWN 180

Query: 183 MYFRDLIPRLVKEGDDGNCGSSAVCDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIR 242
           MYF+ L+PRLVK GDDGNCGS+A+CDT+CLQ LSKRIH+GKFVAEAKFR +P AYE AI+
Sbjct: 181 MYFKHLLPRLVKPGDDGNCGSAALCDTMCLQILSKRIHFGKFVAEAKFRENPAAYETAIK 240

Query: 243 AQDKQKLMDILTYPTVEEVVKRRVEMKATVYGQEVTTDAPKAESRATYKIKPSLVADLYG 302
            QD+ +LM +LTY TVEEVVK+RVE+KA ++GQ++T + P+ E+  +YKI+PSLVA LYG
Sbjct: 241 EQDRTQLMQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYG 300

Query: 303 DWIMPLTKEVQVQYLLRRLD 321
           + IMPLTKEVQ++YLLRRLD
Sbjct: 301 ERIMPLTKEVQIEYLLRRLD 316

[Close]

BLAST of CmaCh11G011580.1 vs. TAIR 10
Match: AT5G10870.1 (chorismate mutase 2 )

HSP 1 Score: 269.2 bits (687), Expect = 4.1e-72
Identity = 131/252 (51.98%), Postives = 184/252 (73.02%), Query Frame = 0


Query: 70  SETLTLESIRFSLIIQEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSLVEYMVKETE 129
           S  L+L+ IR SLI QED+I+F+L+ERA++  N+  ++    +  G   SL E+ V+ETE
Sbjct: 14  SNVLSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFEESRCLDSGSFSSLTEFFVRETE 73

Query: 130 KLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWDMYFRDLIPR 189
            + A+VGRY+ P+E+PFF  ++P  + P  +YP  LHP A S+NIN ++WD+YF++L+P 
Sbjct: 74  IIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQIWDIYFKELLPL 133

Query: 190 LVKEGDDGNCGSSAVCDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIRAQDKQKLMD 249
            VK GDDGN  S+A  D  CLQALS+RIHYGKFVAE KFR +P+ YE AIRAQD++ LM 
Sbjct: 134 FVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYEPAIRAQDREALMK 193

Query: 250 ILTYPTVEEVVKRRVEMKATVYGQEVTTDAPKA-ESRATYKIKPSLVADLYGDWIMPLTK 309
           +LT+  VEE+VK+RV+ KA  +GQEV  ++    ES+  YK+ P L + +YG+W++PLTK
Sbjct: 194 LLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWLIPLTK 253

Query: 310 EVQVQYLLRRLD 321
            V+V+YLLRRLD
Sbjct: 254 LVEVEYLLRRLD 265

The following BLAST results are available for this feature:

BLAST of CmaCh11G011580.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
D2CSU4	7.5e-119	74.29	Chorismate mutase 1, chloroplastic OS=Petunia hybrida OX=4102 GN=CM1 PE=1 SV=1	[more]
P42738	1.4e-112	68.65	Chorismate mutase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM1 PE=1 S...	[more]
Q9C544	1.5e-106	63.75	Chorismate mutase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM3 PE=1 S...	[more]
B4FNK8	1.8e-104	70.00	Chorismate mutase 1, chloroplastic OS=Zea mays OX=4577 GN=CM1 PE=1 SV=1	[more]
Q9S7H4	5.8e-71	51.98	Chorismate mutase 2 OS=Arabidopsis thaliana OX=3702 GN=CM2 PE=1 SV=1	[more]

BLAST of CmaCh11G011580.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29200.1	9.7e-114	68.65	chorismate mutase 1	[more]
AT1G69370.1	1.0e-107	63.75	chorismate mutase 3	[more]
AT5G10870.1	4.1e-72	51.98	chorismate mutase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008238	Chorismate mutase, AroQ class, eukaryotic type	PIRSF	PIRSF017318	Chor_mut_AroQ_eu	coord: 61..320 e-value: 1.2E-125 score: 416.1
IPR008238	Chorismate mutase, AroQ class, eukaryotic type	TIGRFAM	TIGR01802	TIGR01802	coord: 73..320 e-value: 8.2E-107 score: 354.4
IPR008238	Chorismate mutase, AroQ class, eukaryotic type	PANTHER	PTHR21145	CHORISMATE MUTASE	coord: 30..320
IPR008238	Chorismate mutase, AroQ class, eukaryotic type	PROSITE	PS51169	CHORISMATE_MUT_3	coord: 66..320 score: 93.03595
IPR037039	Chorismate mutase, AroQ class superfamily, eukaryotic	GENE3D	1.10.590.10	Chorismate mutase, AroQ class superfamily, eukaryotic	coord: 66..320 e-value: 3.0E-123 score: 412.1
None	No IPR available	PANTHER	PTHR21145:SF0	CHORISMATE MUTASE 1, CHLOROPLASTIC	coord: 30..320
IPR036263	Chorismate mutase type II superfamily	SUPERFAMILY	48600	Chorismate mutase II	coord: 66..320

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh11G011580	CmaCh11G011580	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G011580.1:exon:361	CmaCh11G011580.1:exon:361	exon
CmaCh11G011580.1:exon:362	CmaCh11G011580.1:exon:362	exon
CmaCh11G011580.1:exon:363	CmaCh11G011580.1:exon:363	exon
CmaCh11G011580.1:exon:364	CmaCh11G011580.1:exon:364	exon
CmaCh11G011580.1:exon:365	CmaCh11G011580.1:exon:365	exon
CmaCh11G011580.1:exon:366	CmaCh11G011580.1:exon:366	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G011580.1:five_prime_utr	CmaCh11G011580.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G011580.1:cds	CmaCh11G011580.1:cds	CDS
CmaCh11G011580.1:cds	CmaCh11G011580.1:cds_2	CDS
CmaCh11G011580.1:cds	CmaCh11G011580.1:cds_3	CDS
CmaCh11G011580.1:cds	CmaCh11G011580.1:cds_4	CDS
CmaCh11G011580.1:cds	CmaCh11G011580.1:cds_5	CDS
CmaCh11G011580.1:cds	CmaCh11G011580.1:cds_6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G011580.1:three_prime_utr	CmaCh11G011580.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh11G011580.1	CmaCh11G011580.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0046417	chorismate metabolic process
biological_process	GO:0008652	cellular amino acid biosynthetic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004106	chorismate mutase activity