CmaCh10G009840.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh10G009840.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr10: 5102934 .. 5106116 (-)
Sequence length483
RNA-Seq ExpressionCmaCh10G009840.1
SyntenyCmaCh10G009840.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCACAGTCGGTGAAATCATTGTTGGGCAGAAATTTGTGATACATTGTGTATCTGACAACACAAAGGAGAATGCTTTATTTTGTTTATGTAAGTGCAGAATGGTGGAGAGATGAACGCTTACGTTATGGAATTTGAAGTCCACCGCTAGCAGATATTGTTTTCTTTAGGCTTTCTCTTTTAGGCTTTCCCTCGAGGTTTTTAAAATGCGTCTTCTACGGAGAGGTTTCTACACCCTTATAAAGAATGCTTCATTTTCCTCCCCAATCGATGTTGGATCTCACATTGAATGTATTGGAGTTGTTGGTCTTTAATTTCCAATATGACAACCCTTCTTGAATATAGAATACTTGGAGAATGGGCTGTTTGCTGCATCTTCTTACAGGTATGAACATCATTCTTTTAGGGAAGGATCGAAGCACAAAGAGCGTGGGGATTGAACCTTCCCGGCAACTTCTCTAGCAACTGGCGAGTAATTCAATTTTTAATATAGGTAAGCATTATTGGAGAAGTTGAACAACCTGATTTGGAAGTCTGAAATGCGTCTTTGTGATCTGCTGGCAATTATGCTCTTCTGAACAAAGCTTCCTTCATTCACACAGATGCGTCTTATTCAAGTTTAATACGCCTCCTTATACATTTCCATTGCATCTTCATTATCTGCCTCAATTTATTGAACACTTTGACATGTAGTCCGTTGAGTTTCCCTGCCGCCTCTTGGTTGTACTATAGAAGTTTGAAGGAAAGGAATCGATGAATATGCTTGCTCACTTGGGACGTCTCTTTTCCATTTTTGGGTATGGCATTCTCGTTTCACTTCACTTTAAAGAATAAATCCTCTTCCCATTTGTATGCTTTATTATTATAAAATGACATGTAATAGCTTAAGCCAGCTGGTGCTGATGTTGTCCGTTACGTATCATCGTCAGCTTCACGATTTTAAAAGGCGTATGCTAGGGAGAGGTTTTCACACTCTCATTAAGAATGTTTTGTTATCCTCTCCAACCGATGTAGGATCTCTCAATCTACCTCTTTGGAGGCCCAGCGCTCTTGTTGACACACCACCTAATGCTTAGCTTTGATGCCAATTATAATAGTACAAGTCCATCGCTAGCAAATATTGTCTGCTTTGGCCCATTATATATTGCAGTCAGCTTCACGATTTTAAAACGTGTTTTGTTAGGGAGAGTTTTCCACACCCTTATAAAGAATATTTTGTTCCTTCTCCCACCGATATATGATTTCTAAAGAAAGAACGGTGCTTTTTTAGCAAATCATGTTCTTTTATCTCAAATAATGTTCATTGCTATATCTATATTTTGTCATGCAGCAAGTCTAGAGATGAGAACTTCGAGGATTGTTGATCCATTCGCCCAATATTTGTTCCATTGAGCAGTGGATAATATGCATACAAAATGTCGATGGCGTTGCTATGGTCTCAACTTACATGGTAATGTCTTCTTGATACCCTCTAAAACTTGTTTTTCCAATCTTCATCATCACAGAAACATGCACCTTATTACAAGCTACAAGTACAGGTAGTTTCAACCAAATATTTCAATAGAAACTAACATTTTATTGCCTAACAATCATGAAAATATCTCAGTACAATACATATGAACTGAAAAGGAAAGACAGAAGAATTGGCAAACAATAACAGACAATCAAAGATATTTCGGATAGAGAAGCGTCGAAAGAAATCCTAAGGCTATGCCAAGTGGAAATGCGAGATGAAGGCGGTTGATGCTCGAAGCCCTATTCCCGCTGCTTCCTGGGGTGCCGGGGATGGCGGAGCCTCCATTGTCCTGTGGTTGAACACCTAGGTACGTTTTAACATTTAACAACGAAATTTTCGTTAAGAATAGTCTCAAACCATGAACTTAGAATGTAGGGTATGGAAGATTTAGTACCTGGTCCTGGTGCTGGGGCTGGGGCTGATGCTGGACTATTTGATCCCACTGGAAATCCCAAAACTGCATTCAAAACAAGCAGGTTTGAGCTACGAACCTCCCTCTTATCATGATAATTACTGCTTTTAAAACTAATCTAAGCCTCAAAATTTATTTGAATTTTTTCATGGAGGGAGAAACTAGCATGTTCTTCGTTCATGTTTGTTGCAAATTTGAAACATAAAAGTCATTTGGTAATAAATTAGTTTATGTTTGTTTGATTGTTCTAAGAATGTTTTTGAACTTTCCATTTCCATGATCTTAATATTAAAAAAATGTTTGTTTGATTATTTTTAAAATGGTCTTAAACTTGAACTTGGTATTAAAAAATGCTTCTGTTTTCGTAAAATAACAATTTAATCCTTCAACTTTAGTACAATCCAGTTTAGATTTAGTTTTGTAATAATTTGATCTCCGATTTATAAGTTCATCTTTATATAAATTAATTTAAATTGTTATGCTTGTAATTATATGTTTAATTATACCTTTCTAAAATAATATGCCTATGATATCTTGGTCGGAAGAACAAACTACATTTTATAAGATCGTGGAAACCTTATGCATTTTAAAGGATTGAAAAATTGAAAAATCATGGAATATAAATTTGAATCATAATTGAAAAATTCCATTAAATAGAAAAAAAAAAAAAAAAAAAAAGAAGAAGATTAAAATTGGTATTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAGAAGAAGAAGATTAAAATTGGTATTTTAAAAAGATTAAACATTTTAATTTTAATTTTATTTTTTTTTTAATTTTTTAAGGAAAGGGAAAAGGAAGCTTACGAGAACAGAGATTGACGGGAGGAGTGGAGACATTGCAGGCGGAAGGAAGCTTCATAGCTCTGTCGACATCAATGGTTAACCCAACTTTATTAGGATCGCTAAGCAGCTGACAGAGGCAGCTAGGGCTACTCTCCACCAGCCCCGCCAGCTCCGGGCAGCAATGCTTGTCCGGCTTCGCGTCCTTGCTCCCCGCCGACACGTACGACAGGCAATCCGACATATTCAGCAGCGTCGTGAAGCAGTCCGTCGCAACCGCTGGCCCCGGCGCCGGAGCCTGCGCCACCGCTCCTGCAATGCCGTGA

mRNA sequence

ATGGCTCCACAGTCGGGAAGGATCGAAGCACAAAGAGCGTGGGGATTGAACCTTCCCGGCAACTTCTCTAGCAACTGGCGAAAACATGCACCTTATTACAAGCTACAAGTACAGTACCTGGTCCTGGTGCTGGGGCTGGGGCTGATGCTGGACTATTTGATCCCACTGGAAATCCCAAAACTGCATTCAAAACAAGCAGGAAAGGGAAAAGGAAGCTTACGAGAACAGAGATTGACGGGAGGAGTGGAGACATTGCAGGCGGAAGGAAGCTTCATAGCTCTGTCGACATCAATGAGGCAGCTAGGGCTACTCTCCACCAGCCCCGCCAGCTCCGGGCAGCAATGCTTGTCCGGCTTCGCGTCCTTGCTCCCCGCCGACACGTACGACAGGCAATCCGACATATTCAGCAGCGTCGTGAAGCAGTCCGTCGCAACCGCTGGCCCCGGCGCCGGAGCCTGCGCCACCGCTCCTGCAATGCCGTGA

Coding sequence (CDS)

ATGGCTCCACAGTCGGGAAGGATCGAAGCACAAAGAGCGTGGGGATTGAACCTTCCCGGCAACTTCTCTAGCAACTGGCGAAAACATGCACCTTATTACAAGCTACAAGTACAGTACCTGGTCCTGGTGCTGGGGCTGGGGCTGATGCTGGACTATTTGATCCCACTGGAAATCCCAAAACTGCATTCAAAACAAGCAGGAAAGGGAAAAGGAAGCTTACGAGAACAGAGATTGACGGGAGGAGTGGAGACATTGCAGGCGGAAGGAAGCTTCATAGCTCTGTCGACATCAATGAGGCAGCTAGGGCTACTCTCCACCAGCCCCGCCAGCTCCGGGCAGCAATGCTTGTCCGGCTTCGCGTCCTTGCTCCCCGCCGACACGTACGACAGGCAATCCGACATATTCAGCAGCGTCGTGAAGCAGTCCGTCGCAACCGCTGGCCCCGGCGCCGGAGCCTGCGCCACCGCTCCTGCAATGCCGTGA

Protein sequence

MAPQSGRIEAQRAWGLNLPGNFSSNWRKHAPYYKLQVQYLVLVLGLGLMLDYLIPLEIPKLHSKQAGKGKGSLREQRLTGGVETLQAEGSFIALSTSMRQLGLLSTSPASSGQQCLSGFASLLPADTYDRQSDIFSSVVKQSVATAGPGAGACATAPAMP
Homology
The following BLAST results are available for this feature:
BLAST of CmaCh10G009840.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh10G009840.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh10G009840.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh10G009840.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh10G009840CmaCh10G009840gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh10G009840.1:exon:355CmaCh10G009840.1:exon:355exon
CmaCh10G009840.1:exon:354CmaCh10G009840.1:exon:354exon
CmaCh10G009840.1:exon:353CmaCh10G009840.1:exon:353exon
CmaCh10G009840.1:exon:352CmaCh10G009840.1:exon:352exon
CmaCh10G009840.1:exon:351CmaCh10G009840.1:exon:351exon
CmaCh10G009840.1:exon:350CmaCh10G009840.1:exon:350exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh10G009840.1:cdsCmaCh10G009840.1:cds_6CDS
CmaCh10G009840.1:cdsCmaCh10G009840.1:cds_5CDS
CmaCh10G009840.1:cdsCmaCh10G009840.1:cds_4CDS
CmaCh10G009840.1:cdsCmaCh10G009840.1:cds_3CDS
CmaCh10G009840.1:cdsCmaCh10G009840.1:cds_2CDS
CmaCh10G009840.1:cdsCmaCh10G009840.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh10G009840.1CmaCh10G009840.1-proteinpolypeptide