CmaCh10G005770.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh10G005770.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr10: 2639060 .. 2641700 (-)
Sequence length584
RNA-Seq ExpressionCmaCh10G005770.1
SyntenyCmaCh10G005770.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGTCTACGACATGGGAGACCCACTTGTGCAATTATGGTGATATTATAAATCATGACGCCACTTGGGGGACATTGAATTCATTTCTTCCAAAACGATGCTGTTTCGAACTGTTTCACCCACTCCAGAGCCCCAAATAAGACAATTGCAAGGGCTTGCTGTTGTTTTCTTAATAGGTATCTCTTATGAAACTATTTTTTATGACTTGGGAAAAATGCTTCATCCATTTCCCATATTTGGGTTTTGCTTTTGATTACAATGAACATCTCTTGTTTATAGTGTGAGATTATCAACTAAGTTCGAATATGTCTTTAACACGATTCTGGTCCAATAATCTTGGTTGCTTGTTAATGTAACAGTTCAAACTCACTGTTAGTAGACTTCTTTTTTGGGTTTCCCCTCGAGCTTGGTCGTTTATGAGTGTAACAGTTCAAGCTAGCAGATTTGTTCTTTTTGAACTTTCCCTTTTGGATTTCCCCTCACGTTGGTTTCTGGTCCTCTTTGTACTTTCCCTTCTAGGTTTTTCCTCAAGATCAGTCGTTTATTAGTGTAACTGTTCAAGGCTACCGTTAGTAGATATTGTCATTTTTAGACTTTCCGTTAGGGAGAAGTTTTCACACCCTCATAAAGAAATCGATGTGTGATCTCATAATTCATCCCTTTTCCTTATAATCCACCAATTTCAGGGTCTAGTGTCTCGTAGTTAGTCAAGCTCACTTGTAAAACAAAATTTTATACCGAATGTTATACCAATACATTTTTTATGTATAGTATCGAGCATTGGCTCCATCTCCAACTCATCTGATAATGAAGCTTCCTTGCTGCCAGGTATGATTTTGTTTTATTTCCTTCTTTTTAATATGTAATTTTTTTTATAATTTAATTTATCCTGTGAACAAATTACAGATGGATGTGGTGGTGCTACTTTCATTTTTTTTCTTAAAATGTATGCTTTTAATTTATTAAACAGAGCTATATCATTATTTTTAATTCCATCGGTCTTTATTAATTGTGAAAACAAAGTAACTTAAGGTCCGGCCCAATAAGCCATTTATACTGTAAGCCCACATAGAGCCAACCCAGCCCAACTTCAAAAATAGCTAGCCTTTTTTTTATTATTAATTTTAAATTGAGACCCAATTAGCTAGCCTTTTTCATTTTTTTTTTATAAGAAAATATTTTAATAACCAAAACATTAATAAACTTATAAATAATTATATATAAAAATTTGCAGATTTGAATGATAAATCAAATTCAAAATTTAAAAAACGTTTCGTTGAAATAAAAGATTGTAGCACATGTTCGATTTTGATTCTTATCTTAACATATTTAATTATTTGGAATTATAATATACAAAAAAATACAAAATACAAAATCACTATTATTATTATTATTTTGGGCAAGTTGCGTGTGAGCAAAAAATAACAATCGAACGCCAGCAAATATACTCGTCGTTTATGGGAGCGCTGAAAATGACACGTGGCGCTATTTGGCTTCTGAAATAATAAAATTTCCAAAAATAACGAAAGTTCTATGCACCCGGCGGTATTTTCATGGTTCACGTGCTTGTCGCATGCGCCAACGGGAAACTTCTAGGAAAACCACTATTCAGGACACGTGTCACATTCGTAGCAGAAAGTTACGGTGAAGCGGCACGTACATGTTAGTATCTCCCAAAGTATGAGGAGATTAAGTTGTAGAAACGTGTCAATCGTACTGTGGTCTAGGAAGGAGGTTACGGAGAAACGGCATCCAGAGGATAATCTCTGAATTTAAAAAGTGAAAAAGAAAATCAAATTTAGATTTTTGTAATTTATGATTTGAAAATATAAAAAGCGTTCGGAGTTGGACTTGCGTGCCTGTCACGAGACCTACCGTTCTCTTGTCGTCTAGCGTTTATTTTCGTCCCTTTTTCAGAATATTTGAAATTATGGAAAATGAATTTGGATTATTTAAAGAATATTTGTGATAATTTTGGCCTTTTTTAATGAGGTCAAAAAGGTCATTTGAATTAGTTTATATTTTCCATTAAATTGATTATTAAAAAAAAAGTAAATAGATAATTAAAAATAAATAAATAAATATATCATCTACTAAAATCGGGTCATGTTGATGATATGTATGTATGTATGTATGTATGTATGTACTTGCTGTAGCCGGCTACGAAAACATGTAACCGAAACAGCCGGTAAAAGTATACTGTCTAGCCCACGCGTCTCTAAACGCCAAATCGCCACGTGTCCGGTCTTATCCGTTCACAGTTTTCCCCCCTTTTAAATCGCTACCAAAGGTAAAGCAAAAAGCAACACATCCATTTCCCACTCCTCTCTGTCTAAAAAAGTACTTTCCGATCATCTCTCTCCAAAATGGCGACTAATCTCTTCACTTTTGCCCCCACCAGCATCCGTGCCTGTGCCTCCTCCGCCGACCACAACCGCCGGAAAACCTCCTCCTCCTCCTCCAATTGGTGGGCCCCGGTCTTCGGATGGTCCTCTGAACCGGACTACATCGACTCCGCCAACAAGTCCAACCCTAAAACTCCAGCCGACGGAGTTTCAAAATCAGATCCAGAGACGAAATCGGCGAGAAATCGATTTTCCCCCGGCTGCTTCACGGAGTCGAAGGCGCGACAACTTCGCCTGA

mRNA sequence

TCGTCTACGACATGGGAGACCCACTTGTGCAATTATGGTGATATTATAAATCATGACGCCACTTGGGGGACATTGAATTCATTTCTTCCAAAACGATGCTGTTTCGAACTGTTTCACCCACTCCAGAGCCCCAAATAAGACAATTGCAAGGGCTTGCTGTTGTTTTCTTAATAGTATCGAGCATTGGCTCCATCTCCAACTCATCTGATAATGAAGCTTCCTTGCTGCCAGGTAAAGCAAAAAGCAACACATCCATTTCCCACTCCTCTCTGTCTAAAAAAGTACTTTCCGATCATCTCTCTCCAAAATGGCGACTAATCTCTTCACTTTTGCCCCCACCAGCATCCGTGCCTGTGCCTCCTCCGCCGACCACAACCGCCGGAAAACCTCCTCCTCCTCCTCCAATTGGTGGGCCCCGGTCTTCGGATGGTCCTCTGAACCGGACTACATCGACTCCGCCAACAAGTCCAACCCTAAAACTCCAGCCGACGGAGTTTCAAAATCAGATCCAGAGACGAAATCGGCGAGAAATCGATTTTCCCCCGGCTGCTTCACGGAGTCGAAGGCGCGACAACTTCGCCTGA

Coding sequence (CDS)

ATGCTGTTTCGAACTGTTTCACCCACTCCAGAGCCCCAAATAAGACAATTGCAAGGGCTTGCTGTTGTTTTCTTAATAGTATCGAGCATTGGCTCCATCTCCAACTCATCTGATAATGAAGCTTCCTTGCTGCCAGGTAAAGCAAAAAGCAACACATCCATTTCCCACTCCTCTCTGTCTAAAAAAGTACTTTCCGATCATCTCTCTCCAAAATGGCGACTAATCTCTTCACTTTTGCCCCCACCAGCATCCGTGCCTGTGCCTCCTCCGCCGACCACAACCGCCGGAAAACCTCCTCCTCCTCCTCCAATTGGTGGGCCCCGGTCTTCGGATGGTCCTCTGAACCGGACTACATCGACTCCGCCAACAAGTCCAACCCTAAAACTCCAGCCGACGGAGTTTCAAAATCAGATCCAGAGACGAAATCGGCGAGAAATCGATTTTCCCCCGGCTGCTTCACGGAGTCGAAGGCGCGACAACTTCGCCTGA

Protein sequence

MLFRTVSPTPEPQIRQLQGLAVVFLIVSSIGSISNSSDNEASLLPGKAKSNTSISHSSLSKKVLSDHLSPKWRLISSLLPPPASVPVPPPPTTTAGKPPPPPPIGGPRSSDGPLNRTTSTPPTSPTLKLQPTEFQNQIQRRNRREIDFPPAASRSRRRDNFA
Homology
The following BLAST results are available for this feature:
BLAST of CmaCh10G005770.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh10G005770.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh10G005770.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh10G005770.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..162

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh10G005770CmaCh10G005770gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh10G005770.1:exon:520CmaCh10G005770.1:exon:520exon
CmaCh10G005770.1:exon:519CmaCh10G005770.1:exon:519exon
CmaCh10G005770.1:exon:518CmaCh10G005770.1:exon:518exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh10G005770.1:cdsCmaCh10G005770.1:cds_3CDS
CmaCh10G005770.1:cdsCmaCh10G005770.1:cds_2CDS
CmaCh10G005770.1:cdsCmaCh10G005770.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh10G005770.1:five_prime_utrCmaCh10G005770.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh10G005770.1CmaCh10G005770.1-proteinpolypeptide