CmaCh10G001870.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh10G001870.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description60S ribosomal protein L34
LocationCma_Chr10: 857651 .. 860083 (+)
Sequence length973
RNA-Seq ExpressionCmaCh10G001870.1
SyntenyCmaCh10G001870.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCGTCGACGAGAACACGTACGAACCGTTAGATCTAGGGCATCGGGGTCGTCTTGGTGTTTTTATCTCTTTCTCCCAAGTTTAGTAAAATCTCTGCAGCAGCCTCCTTTACCAGGACAGGACACCCAGAGGGAGGAAGAGAGGAAAATCGTCCAAGATGGTTCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCTACCAGGTCTAACCAGCACCGTGTCGTCAAAACCCCAGGTAACTTTCTGATACGACTCCATTCTATGTCTCTGTATCGTTGCGCATTTAATGTTCTTGCTCTTATCATCTTGTATTCTTCTGTTTGAAGGCGGGAAGCTTGTGTACCAGACCACCAAGAAAAGAGCTAGTGGACCGAAATGCCCAGTCACCGGCAAAAGGATTCAGGGAGTATGTCTTCGATCACTGTTCTCTGTCCATTTTTATCCCTTATTCGTAGTTATTTCACAAATAACGTATCTTATTGATGTACTCGTTCATTCTCCCTTTTGACTTTCTGGATATTTTGATTGTTACTGGCTGTTTCATGATGGCCATGTTATCACCTTGTAGATTAGATCTTTGCTGTAAATCCCTATGAGACTTATTTAGTAGCCAAGTATAGAGGAAATAAGAACTGACGCAGATAGCCTTTTTTAGTCGCGTGCCGCATTTTTGGTACATTAGAGAAAAGTTTTGGTCTTTCGATACTGAAAGTTTATCCATGTGCCTAAATTTCGGTTCTTTGTGATCATTGGGCGTTTCAGCCACCTTTCAATTCCTCCCTTAATGAATTTTTCTCATGAGTAATGGGAAGTGGTCTAGTCCCCACAAATGCTTTTTCCTTGGTCGTTGGACACCAAAATCTTCCCTGCTGAGACTCTACCAGTTTCTAGATTTTACAAGGAGCCTAGCCTTTTGCCTCAGTTCAAATTTAGTTTTTTTACGCCCTTGGAAATAAAATAACTACGTTTCTGGCTGCGCTCTAATGAGTGGAAGTTTAATGATTCGTGGTATTTTTTACGGCGTGATCGTTCTAATGAGTGGAAGTTTCATGAGTAATCAATATGTTGGCATCGAGCACGATCAATGATATACTATACAGTCCAAAATCTACCTCATAAACAAAATACAGTTCTATACTTACCTTTTATTGTCGGATGGACCCTTTACTGCCTTCAACTTGATTCAGAAAGGTTTACTCTTCATTGTTTTAAACTGCATCTTAATGACGCTCCTGCAAAATATCCTTTCATTTATTTTATATTCCTATTGCAACGACAACTAAATTTTGTTTTGCAAAACTTATGAATAATCTTTCGATTACAAATTTAAAATCCTTGCATTTTCATTGCCTAATTGTTTGTGTCCTTTCTATCGCTCGAGCATGTCTATCTTTACTTCATCCATTGTATGTACATTGGCAGGTGCATGCATGTTAATTTGTGCTTCATTACATGCATTCTTTGTATATTGGTAGATACATGCATATGCATTTGTTATTCATATGTTTGAATCTTATATGTACGTTGCTGGTTGTTTTTTGGATTTAATGACAGACTTCTAAGTTTAAATTTGGTCAATAAAAGTGGGTATTTGGTTTTTTTGTTTATAATATGGTGAAAAATTCTGAATTTATATGGCTGACTTAGGTAATCCGTGTTAATGTGCGATCATGCAGATTCCTCACTTAAGGCCAGCTGAGTATAAGAGGTCTAGACTAGCTAGGAACAGGAGGACTGTGAATCGTGCCTATGGTGGCGTTTTATCCGGCGGGGCTGTCAGAGAGAGGTTTGCATCCCATTTTTTCTCATCACTCAATATTTCATCCATTTGATTGTTTTTACGACAAGGCGTTTTCCTAATCTTTCTTTGTTTTGCTGGGGATAGGATCATTCGTGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAGGTATTGAAGATCCAGAAGGCGAAGGAAAAGCTTGCATCAAAGAGCTAAATTAGTTGTGTTGGTGGTTTAGAAAATTGAACAAATTTTGACTTTCTGGGACTTGATGCTGAAGTTGATCGATTATTATTTAAAGTTGGTTTTGGGAGGAACCAGATTTTAGCTCCGGAGTTCAGTTCTTCTATAATATGTTTGCATTTTATACTAGTTCTTTTAATAACCTTTCTTCAACCAAGTTCTTATAATCCAGGGAGTTATGACTGTTTTGTACATGAGCGTAGAGGGCTCGACTATCTACCCCCGACATTCAAGTTAGTAGAGTTTGAAGTAAAGTAGGTGTGTAAGGTGTACTCTTCGAGAGTAATTCCGCTCTCTTTTTATGGAAGGAGTGGGTAAAAAATTACCTTATCTTAAACATCGACGTAAATCTTGTTACATCGTGTCTCTTGAGTGTGGTATTGAGTCACGTCAGGTCAAAGATGACTTCAATGTCTTCAATTCCTT

mRNA sequence

AATCGTCGACGAGAACACGTACGAACCGTTAGATCTAGGGCATCGGGGTCGTCTTGGTGTTTTTATCTCTTTCTCCCAAGTTTAGTAAAATCTCTGCAGCAGCCTCCTTTACCAGGACAGGACACCCAGAGGGAGGAAGAGAGGAAAATCGTCCAAGATGGTTCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCTACCAGGTCTAACCAGCACCGTGTCGTCAAAACCCCAGGCGGGAAGCTTGTGTACCAGACCACCAAGAAAAGAGCTAGTGGACCGAAATGCCCAGTCACCGGCAAAAGGATTCAGGGAATTCCTCACTTAAGGCCAGCTGAGTATAAGAGGTCTAGACTAGCTAGGAACAGGAGGACTGTGAATCGTGCCTATGGTGGCGTTTTATCCGGCGGGGCTGTCAGAGAGAGGATCATTCGTGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAGGTATTGAAGATCCAGAAGGCGAAGGAAAAGCTTGCATCAAAGAGCTAAATTAGTTGTGTTGGTGGTTTAGAAAATTGAACAAATTTTGACTTTCTGGGACTTGATGCTGAAGTTGATCGATTATTATTTAAAGTTGGTTTTGGGAGGAACCAGATTTTAGCTCCGGAGTTCAGTTCTTCTATAATATGTTTGCATTTTATACTAGTTCTTTTAATAACCTTTCTTCAACCAAGTTCTTATAATCCAGGGAGTTATGACTGTTTTGTACATGAGCGTAGAGGGCTCGACTATCTACCCCCGACATTCAAGTTAGTAGAGTTTGAAGTAAAGTAGGTGTGTAAGGTGTACTCTTCGAGAGTAATTCCGCTCTCTTTTTATGGAAGGAGTGGGTAAAAAATTACCTTATCTTAAACATCGACGTAAATCTTGTTACATCGTGTCTCTTGAGTGTGGTATTGAGTCACGTCAGGTCAAAGATGACTTCAATGTCTTCAATTCCTT

Coding sequence (CDS)

ATGGTTCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCTACCAGGTCTAACCAGCACCGTGTCGTCAAAACCCCAGGCGGGAAGCTTGTGTACCAGACCACCAAGAAAAGAGCTAGTGGACCGAAATGCCCAGTCACCGGCAAAAGGATTCAGGGAATTCCTCACTTAAGGCCAGCTGAGTATAAGAGGTCTAGACTAGCTAGGAACAGGAGGACTGTGAATCGTGCCTATGGTGGCGTTTTATCCGGCGGGGCTGTCAGAGAGAGGATCATTCGTGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAGGTATTGAAGATCCAGAAGGCGAAGGAAAAGCTTGCATCAAAGAGCTAA

Protein sequence

MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Homology
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BLAST of CmaCh10G001870.1 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.4e-56
Identity = 113/120 (94.17%), Postives = 118/120 (98.33%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKL+YQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]
BLAST of CmaCh10G001870.1 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-55
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK KEK A+K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]
BLAST of CmaCh10G001870.1 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.9e-54
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYAT+SNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]
BLAST of CmaCh10G001870.1 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.2e-54
Identity = 108/119 (90.76%), Postives = 113/119 (94.96%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYAT+SNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]
BLAST of CmaCh10G001870.1 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.5e-53
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYAT+SNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]
BLAST of CmaCh10G001870.1 vs. ExPASy TrEMBL
Match: A0A6J1JDI0 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111484827 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CmaCh10G001870.1 vs. ExPASy TrEMBL
Match: A0A6J1I6I6 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CmaCh10G001870.1 vs. ExPASy TrEMBL
Match: A0A6J1HLN7 (60S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CmaCh10G001870.1 vs. ExPASy TrEMBL
Match: A0A6J1DF78 (60S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CmaCh10G001870.1 vs. ExPASy TrEMBL
Match: A0A059D9F6 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03442 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CmaCh10G001870.1 vs. NCBI nr
Match: XP_022987206.1 (60S ribosomal protein L34-like [Cucurbita maxima])

HSP 1 Score: 228.0 bits (580), Expect = 4.3e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CmaCh10G001870.1 vs. NCBI nr
Match: XP_004138175.3 (60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protein L34 [Momordica charantia] >XP_022922091.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933946.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933947.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964734.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964735.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022969674.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022970352.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973066.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973072.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_023515397.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023519212.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023520847.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529309.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529311.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_038878407.1 60S ribosomal protein L34-like [Benincasa hispida] >KAG6586008.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019300.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6587535.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG6589504.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021512.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.9 bits (577), Expect = 9.5e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CmaCh10G001870.1 vs. NCBI nr
Match: KAG6583599.1 (Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.9 bits (577), Expect = 9.5e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 745 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 804

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 805 EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 864

[Close]
BLAST of CmaCh10G001870.1 vs. NCBI nr
Match: XP_010044743.1 (60S ribosomal protein L34 [Eucalyptus grandis] >XP_030441919.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030449442.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030449623.1 60S ribosomal protein L34 [Syzygium oleosum] >XP_030550747.1 60S ribosomal protein L34 [Rhodamnia argentea] >XP_030550759.1 60S ribosomal protein L34 [Rhodamnia argentea] >KAF7851679.1 hypothetical protein BT93_L3193 [Corymbia citriodora subsp. variegata] >KAF7851688.1 hypothetical protein BT93_L3202 [Corymbia citriodora subsp. variegata] >KAF8021475.1 hypothetical protein BT93_G1807 [Corymbia citriodora subsp. variegata] >KCW86845.1 hypothetical protein EUGRSUZ_B03442 [Eucalyptus grandis])

HSP 1 Score: 225.7 bits (574), Expect = 2.1e-55
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CmaCh10G001870.1 vs. NCBI nr
Match: XP_038893923.1 (60S ribosomal protein L34-like [Benincasa hispida])

HSP 1 Score: 225.7 bits (574), Expect = 2.1e-55
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]
BLAST of CmaCh10G001870.1 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-55
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYAT+SNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]
BLAST of CmaCh10G001870.1 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 )

HSP 1 Score: 210.7 bits (535), Expect = 6.5e-55
Identity = 108/119 (90.76%), Postives = 113/119 (94.96%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYAT+SNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]
BLAST of CmaCh10G001870.1 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-54
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYAT+SNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]
BLAST of CmaCh10G001870.1 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 171.4 bits (433), Expect = 4.4e-43
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 0 

Query: 1  MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRL YR RHSYAT+SNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61 EYKRSRLARNRRTVNRAYGGVLSGGAVRERII 93
          EYKRSRL+RNRRTVNRAYGGVLSG AVRER +
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERFV 92

The following BLAST results are available for this feature:
BLAST of CmaCh10G001870.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P410983.4e-5694.1760S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1[more]
P405901.3e-5593.3360S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1[more]
Q423511.9e-5490.8360S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1[more]
Q9FE659.2e-5490.7660S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1[more]
Q9LJW63.5e-5390.0060S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1[more]
BLAST of CmaCh10G001870.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JDI02.1e-56100.0060S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111484827 PE=3 ... [more]
A0A6J1I6I64.6e-5699.1760S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 ... [more]
A0A6J1HLN74.6e-5699.1760S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=... [more]
A0A6J1DF784.6e-5699.1760S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV... [more]
A0A059D9F61.0e-5598.33Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03442 PE=3 SV... [more]
BLAST of CmaCh10G001870.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022987206.14.3e-56100.0060S ribosomal protein L34-like [Cucurbita maxima][more]
XP_004138175.39.5e-5699.1760S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protei... [more]
KAG6583599.19.5e-5699.17Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_010044743.12.1e-5598.3360S ribosomal protein L34 [Eucalyptus grandis] >XP_030441919.1 60S ribosomal pro... [more]
XP_038893923.12.1e-5598.3360S ribosomal protein L34-like [Benincasa hispida][more]
BLAST of CmaCh10G001870.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G26880.11.3e-5590.83Ribosomal protein L34e superfamily protein [more]
AT1G69620.16.5e-5590.76ribosomal protein L34 [more]
AT3G28900.12.5e-5490.00Ribosomal protein L34e superfamily protein [more]
AT1G26880.24.4e-4390.22Ribosomal protein L34e superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008195Ribosomal protein L34AePRINTSPR01250RIBOSOMALL34coord: 44..54
score: 50.0
coord: 26..43
score: 53.57
coord: 66..88
score: 44.72
coord: 13..26
score: 60.2
IPR008195Ribosomal protein L34AePFAMPF01199Ribosomal_L34ecoord: 1..96
e-value: 1.9E-38
score: 130.6
IPR008195Ribosomal protein L34AePANTHERPTHR1075960S RIBOSOMAL PROTEIN L34coord: 1..120
NoneNo IPR availableGENE3D6.20.340.10coord: 39..120
e-value: 2.6E-36
score: 125.4
NoneNo IPR availableGENE3D6.20.370.70coord: 1..38
e-value: 7.3E-22
score: 78.8
NoneNo IPR availablePANTHERPTHR10759:SF14SUBFAMILY NOT NAMEDcoord: 1..120
IPR018065Ribosomal protein L34e, conserved sitePROSITEPS01145RIBOSOMAL_L34Ecoord: 15..28

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh10G001870CmaCh10G001870gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh10G001870.1:exon:1391CmaCh10G001870.1:exon:1391exon
CmaCh10G001870.1:exon:1392CmaCh10G001870.1:exon:1392exon
CmaCh10G001870.1:exon:1393CmaCh10G001870.1:exon:1393exon
CmaCh10G001870.1:exon:1394CmaCh10G001870.1:exon:1394exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh10G001870.1:five_prime_utrCmaCh10G001870.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh10G001870.1:cdsCmaCh10G001870.1:cdsCDS
CmaCh10G001870.1:cdsCmaCh10G001870.1:cds_2CDS
CmaCh10G001870.1:cdsCmaCh10G001870.1:cds_3CDS
CmaCh10G001870.1:cdsCmaCh10G001870.1:cds_4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh10G001870.1:three_prime_utrCmaCh10G001870.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh10G001870.1CmaCh10G001870.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005840 ribosome
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome