CmaCh09G011140.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G011140.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr09: 6140994 .. 6143912 (-)
Sequence length	429
RNA-Seq Expression	CmaCh09G011140.1
Synteny	CmaCh09G011140.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAAGAAGAGAAAAGTGGAGTTTTAGAGATGGAGAAGAGGATAAGGAAGAAGCTGAAGAACACCAACTTTATTCCATGGGAGGAGAAGAAAGAACTGATAGATAAAGAAGAAATTCAACTCCATAAAGACTTGGATCAACTTACGAATTGGGTATCATTTTTCATTCTCTTCTCTATTCCATTTGATTTTGATGTGTCTTTTTCATTGAATACAAAGCTTTGTGATTTGAAGATAAAAATGGTGGATTCCATGAATGATGAGAAGCTCAAAGATTATCTTCAACATCGACCAAATGAATTCAAGATTCTCAAAATTCCAAGGTGTAACCCTAGGCGAAATGTAAGATTTTACTGTTCGTCGTTTTTAATGTTTTGCAATTTTTTAGGTTTGAGAACGAGTTTGAGACGTTTTGATGGGTAAGTTTTCGATTTTATTGGAGAGTTTATGAATGTAGTTTTGAGAATTTGTATGGAACAGTTGGTGTCTTCGAGATTTCCTTATATCTTATGTAACCTAATATATCGTGTGATATCATGAATTGAGTGTTTCTGCATCTTTTATGTCATAATACGTTGTGTAATATCATGTGTTGAGTTTTCTTGCAATTTTTTTTGCATGATATGTTTTGGGATCTTATGAGCTGAATTTCTCTGTATCTTTTGTGAGCTAATATGTCGTGGGATATCTTGATTCGAGTTTCTCTGTATCGTTTGTGACTTAATATGTTGTATGATATCATGATTCGAGTTTCTCTACATCTTTTGTGACATAATATGTCGTGTGATATCATGATTCAAGCTTCTATGTATCTTTTGTGACCTAATATCTCGTTTGATATCATGATTCGAGTTTCTCTATATCTTTTGTGACCTAATATGTCATGTTCGAGTTTCTCTGTATCTCTTGTGACATAATATCTCGTGTGGTATCATGATTCGAGTTTCTCTATATCTTTTGTTACCCGATATGTCATGTGATATTTTGATTCAAGTTGCTCTAGATCTTTTAGAAATAATATGTCGTGTGATATCATAATTTGAGTTTCTCTGTATCTTTTGTGACCTATGTTGTGTGATATCATGAATCGAGTTTCTCTGCATCTTTTGTGACCTAATATGTCGTGTGATATCCTGATTTGAGTTTCTACGTATCTTTTGTGACCTAATATCTCGTTTGATATCATGGTTCGAGTTTTTCTCTATCTTTTGAGACCTATTATGTTGTGTGTATCATGATTCGAGTTTCTCTGTATCTTTTGTGACCTATGTTGTGTAATATCATGATTCAAGTTTCTTTAGATCTTTTGTGACCTAATATGTCATGTGATATCCTGATTCGAGTTTCTCTACATCTTTTGTGACTTAATATGTTGTGTGATATCATGATTCGAGCTTCTATGTATCTTTTGTGACCTAATAACTCGTTTGATATCATGATTCGAGTTTCTCTATCGTGACCTAATATGTCGTGTGATATCATGATTCGAGTTTCTCTATATCTTTTGTGACTTAATATCTCATGTGGTATCATGATTCGAGTTTCTCTATATTTTTATGACCTAATATGTCGTGTGATATCATGATTCGAGTTTCTCTATATCTTTTGTGACCTAATATGTCGTGTGTATCATGATTCGAGTCTCTCTGTATCTTTTGTGACCTATATTGTGTAATATCATGATTCGAGTTTCTCTGTATCTTTTGTGACCTAATATGTCGTGTGGTATCATGATTCGAGTTTCTCTATATTTTTTGTGACCTAATATGTCGTGTGATATCTAGATTTGAGTTTCTCTGTATCTTTTTTGACATAATATGTCTATGATATCATGATTTGAGTTTCTCTGTATCTTTTGTGACCTATGTTGTGTAATATCATGATTCAAGTTTCTCTAGATCTTTTGTGACCTAATATGTCATGTGATATCATGATTCGAGTTTCTCTACATCTTTCGTGACCTAATATGTCGTGTGATATCATGATTCAAGCTTCTATGTATCTTTTGTGACCTAATATCTCGTTTGATTTCATGATTCGAGTTTCTCTATATCTTTTATGACCTAATATGTTGTGTGTATCATGATTTGAGTTTCTCTGTTTCTTTTGTGACCTATGTTATGTAATATCATGATTCAAGTTTCTCTGGATCTTTTGTGACCCTAATATGTCATGTGATATCTTGATTCGAGTTTCTCTGTATCTTTTATGACCTAATATGTCGTGTGATATCCTAATTCAAGTTTCTCTATATCTTTTGTGACCTAATATGTCGTGTGATATCATGAGTTCTCTCTCTTTTTTTCTTTGAAGATTTTTCCTATAAATTAGTTAGTTCTTTCCACATAAACTGTCCAATTCTTTTCACATAAACTGTCCATATAAACGGTCCTTAATCGTATGTTCATCACCTATGATAAGTCTTGAGAGGTCATAAGAATAGAATGAGTGTGTATTGAAAAGACTTCAACCAAGAATGCAATATTGCTAAACTTCTACTTCCGAATTCAGTATAACTTATGGAGTGATTTGAACGGAAAGTCTTTCAAATATATGACTCTTTTATAATTCATGGAATCGCTTTTGAATATAGTGCCACCAAATAATTTATCATTGAAGTGATATTCCGAAAAGACCTTAGATCTAAACATAGGATAGAGATGAAAAAGAAAGGCTTGTTGTGTTCATTTTCATTGGGTTTTGTTTACAATTAGTCGAAAAATTAATATCTTAAAGTTTGTTTGATGGCAGGAACAAAGAAGTGAGGATCCTAAGTATTGGACTTCATATGGGATAATGGCTTCAGTTTGGAAGTTCCACAAGCAAGACAACGAGCAGCACCAACTTTCTTAGTTGCCTTAAATTTTGTTCAAATTCTCTGTAAAATGTTATGCAAATTCCAAATATCATAAAATAAG

mRNA sequence

GAAGAAAGAAGAGAAAAGTGGAGTTTTAGAGATGGAGAAGAGGATAAGGAAGAAGCTGAAGAACACCAACTTTATTCCATGGGAGGAGAAGAAAGAACTGATAGATAAAGAAGAAATTCAACTCCATAAAGACTTGGATCAACTTACGAATTGGATAAAAATGGTGGATTCCATGAATGATGAGAAGCTCAAAGATTATCTTCAACATCGACCAAATGAATTCAAGATTCTCAAAATTCCAAGGTGTAACCCTAGGCGAAATGAACAAAGAAGTGAGGATCCTAAGTATTGGACTTCATATGGGATAATGGCTTCAGTTTGGAAGTTCCACAAGCAAGACAACGAGCAGCACCAACTTTCTTAGTTGCCTTAAATTTTGTTCAAATTCTCTGTAAAATGTTATGCAAATTCCAAATATCATAAAATAAG

Coding sequence (CDS)

ATGGAGAAGAGGATAAGGAAGAAGCTGAAGAACACCAACTTTATTCCATGGGAGGAGAAGAAAGAACTGATAGATAAAGAAGAAATTCAACTCCATAAAGACTTGGATCAACTTACGAATTGGATAAAAATGGTGGATTCCATGAATGATGAGAAGCTCAAAGATTATCTTCAACATCGACCAAATGAATTCAAGATTCTCAAAATTCCAAGGTGTAACCCTAGGCGAAATGAACAAAGAAGTGAGGATCCTAAGTATTGGACTTCATATGGGATAATGGCTTCAGTTTGGAAGTTCCACAAGCAAGACAACGAGCAGCACCAACTTTCTTAG

Protein sequence

MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHRPNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS

Homology

[Close]

BLAST of CmaCh09G011140.1 vs. ExPASy TrEMBL
Match: A0A6J1ILW6 (uncharacterized protein LOC111476458 OS=Cucurbita maxima OX=3661 GN=LOC111476458 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.7e-57
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR 60
           MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR
Sbjct: 1   MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR 60

Query: 61  PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 111
           PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS
Sbjct: 61  PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 110

[Close]

BLAST of CmaCh09G011140.1 vs. ExPASy TrEMBL
Match: A0A6J1F930 (uncharacterized protein LOC111443429 OS=Cucurbita moschata OX=3662 GN=LOC111443429 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.2e-56
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR 60
           MEKRIRKKLKNTNFIPWEEKKELIDKEE+QLHKDLDQLTNWIKMVDSMNDEKLKDYLQ R
Sbjct: 12  MEKRIRKKLKNTNFIPWEEKKELIDKEELQLHKDLDQLTNWIKMVDSMNDEKLKDYLQDR 71

Query: 61  PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 111
           PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS
Sbjct: 72  PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 121

[Close]

BLAST of CmaCh09G011140.1 vs. ExPASy TrEMBL
Match: A0A1S4E3H5 (uncharacterized protein LOC107991884 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991884 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.2e-36
Identity = 74/104 (71.15%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 5   IRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHRPNEF 64
           + KK+K    IPWE+KKE+IDKEEIQ+ KDLDQLTNWIKMVD+MNDEKLK+YLQ  P E 
Sbjct: 19  MNKKIKKGIIIPWEQKKEVIDKEEIQIQKDLDQLTNWIKMVDAMNDEKLKEYLQDTPQEL 78

Query: 65  KILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQ 109
           KI+KI +CN +R EQ+ E+PKY  SYGIMASVWKFHKQDN+Q Q
Sbjct: 79  KIIKITKCNTKRKEQKIENPKYLASYGIMASVWKFHKQDNDQQQ 122

[Close]

BLAST of CmaCh09G011140.1 vs. ExPASy TrEMBL
Match: A0A6J1CPG1 (uncharacterized protein LOC111013524 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013524 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.4e-29
Identity = 67/109 (61.47%), Postives = 81/109 (74.31%), Query Frame = 0


Query: 1   MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR 60
           M K+ +KK      I W+EKK++ D+E+I L KDLDQL NWI+MVDSMNDE+LKDYL +R
Sbjct: 1   MNKKTKKK-----GISWQEKKDVTDQEQILLRKDLDQLKNWIQMVDSMNDEQLKDYLHNR 60

Query: 61  PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQL 110
           P E K LKI + N RR  ++ EDP+YW SYGIMASVWKFHKQDN    L
Sbjct: 61  PKELKTLKIQQSNSRRRRRKIEDPRYWASYGIMASVWKFHKQDNNDQLL 104

[Close]

BLAST of CmaCh09G011140.1 vs. ExPASy TrEMBL
Match: A0A6J1CQ19 (uncharacterized protein LOC111013524 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013524 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.8e-28
Identity = 68/111 (61.26%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 1   MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR 60
           M K+ +KK      I W+EKK++ D+E+I L KDLDQL NWI+MVDSMNDE+LKDYL +R
Sbjct: 1   MNKKTKKK-----GISWQEKKDVTDQEQILLRKDLDQLKNWIQMVDSMNDEQLKDYLHNR 60

Query: 61  PNEFKILKIPRCNPRRNE--QRSEDPKYWTSYGIMASVWKFHKQDNEQHQL 110
           P E K LKI + N RR    Q+ EDP+YW SYGIMASVWKFHKQDN    L
Sbjct: 61  PKELKTLKIQQSNSRRRRRVQKIEDPRYWASYGIMASVWKFHKQDNNDQLL 106

[Close]

BLAST of CmaCh09G011140.1 vs. NCBI nr
Match: XP_023535574.1 (uncharacterized protein LOC111796971 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 3.5e-57
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR 60
           MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR
Sbjct: 12  MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR 71

Query: 61  PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 111
           PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS
Sbjct: 72  PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 121

[Close]

BLAST of CmaCh09G011140.1 vs. NCBI nr
Match: XP_022975889.1 (uncharacterized protein LOC111476458 [Cucurbita maxima])

HSP 1 Score: 231.5 bits (589), Expect = 3.5e-57
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR 60
           MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR
Sbjct: 1   MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR 60

Query: 61  PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 111
           PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS
Sbjct: 61  PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 110

[Close]

BLAST of CmaCh09G011140.1 vs. NCBI nr
Match: XP_022937006.1 (uncharacterized protein LOC111443429 [Cucurbita moschata])

HSP 1 Score: 227.3 bits (578), Expect = 6.7e-56
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHR 60
           MEKRIRKKLKNTNFIPWEEKKELIDKEE+QLHKDLDQLTNWIKMVDSMNDEKLKDYLQ R
Sbjct: 12  MEKRIRKKLKNTNFIPWEEKKELIDKEELQLHKDLDQLTNWIKMVDSMNDEKLKDYLQDR 71

Query: 61  PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 111
           PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS
Sbjct: 72  PNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQLS 121

[Close]

BLAST of CmaCh09G011140.1 vs. NCBI nr
Match: KAG7025053.1 (hypothetical protein SDJN02_13876, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 109/137 (79.56%), Postives = 110/137 (80.29%), Query Frame = 0


Query: 1   MEKRIRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNW------------------- 60
           MEKRIRKKLKNTNFIPWEEKKELIDKEE+QLHKDLDQLTNW                   
Sbjct: 1   MEKRIRKKLKNTNFIPWEEKKELIDKEELQLHKDLDQLTNWVSFFILFSIPFDFDVCFSL 60

Query: 61  --------IKMVDSMNDEKLKDYLQHRPNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIM 111
                   IKMVDSMNDEKLKDYLQHRPNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIM
Sbjct: 61  NTKLWDLKIKMVDSMNDEKLKDYLQHRPNEFKILKIPRCNPRRNEQRSEDPKYWTSYGIM 120

[Close]

BLAST of CmaCh09G011140.1 vs. NCBI nr
Match: XP_016902781.1 (PREDICTED: uncharacterized protein LOC107991884 isoform X1 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-35
Identity = 74/104 (71.15%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 5   IRKKLKNTNFIPWEEKKELIDKEEIQLHKDLDQLTNWIKMVDSMNDEKLKDYLQHRPNEF 64
           + KK+K    IPWE+KKE+IDKEEIQ+ KDLDQLTNWIKMVD+MNDEKLK+YLQ  P E 
Sbjct: 19  MNKKIKKGIIIPWEQKKEVIDKEEIQIQKDLDQLTNWIKMVDAMNDEKLKEYLQDTPQEL 78

Query: 65  KILKIPRCNPRRNEQRSEDPKYWTSYGIMASVWKFHKQDNEQHQ 109
           KI+KI +CN +R EQ+ E+PKY  SYGIMASVWKFHKQDN+Q Q
Sbjct: 79  KIIKITKCNTKRKEQKIENPKYLASYGIMASVWKFHKQDNDQQQ 122

The following BLAST results are available for this feature:

BLAST of CmaCh09G011140.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh09G011140.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILW6	1.7e-57	100.00	uncharacterized protein LOC111476458 OS=Cucurbita maxima OX=3661 GN=LOC111476458...	[more]
A0A6J1F930	3.2e-56	98.18	uncharacterized protein LOC111443429 OS=Cucurbita moschata OX=3662 GN=LOC1114434...	[more]
A0A1S4E3H5	8.2e-36	71.15	uncharacterized protein LOC107991884 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CPG1	4.4e-29	61.47	uncharacterized protein LOC111013524 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CQ19	4.8e-28	61.26	uncharacterized protein LOC111013524 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CmaCh09G011140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535574.1	3.5e-57	100.00	uncharacterized protein LOC111796971 [Cucurbita pepo subsp. pepo]	[more]
XP_022975889.1	3.5e-57	100.00	uncharacterized protein LOC111476458 [Cucurbita maxima]	[more]
XP_022937006.1	6.7e-56	98.18	uncharacterized protein LOC111443429 [Cucurbita moschata]	[more]
KAG7025053.1	1.5e-52	79.56	hypothetical protein SDJN02_13876, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_016902781.1	1.7e-35	71.15	PREDICTED: uncharacterized protein LOC107991884 isoform X1 [Cucumis melo]	[more]

BLAST of CmaCh09G011140.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh09G011140	CmaCh09G011140	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G011140.1:exon:282	CmaCh09G011140.1:exon:282	exon
CmaCh09G011140.1:exon:281	CmaCh09G011140.1:exon:281	exon
CmaCh09G011140.1:exon:280	CmaCh09G011140.1:exon:280	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G011140.1:three_prime_utr	CmaCh09G011140.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G011140.1:cds	CmaCh09G011140.1:cds_3	CDS
CmaCh09G011140.1:cds	CmaCh09G011140.1:cds_2	CDS
CmaCh09G011140.1:cds	CmaCh09G011140.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G011140.1:five_prime_utr	CmaCh09G011140.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh09G011140.1	CmaCh09G011140.1-protein	polypeptide