CmaCh09G009330.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G009330.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein TIC 214
Location	Cma_Chr09: 4660715 .. 4661092 (-)
Sequence length	270
RNA-Seq Expression	CmaCh09G009330.1
Synteny	CmaCh09G009330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCAAGGGTTGGGCTATTCGCCCATTAAAGTGGTATGTGAGCTGGGTTTAGGACATCGTGAGACAATTCGATCCATATCCAGTGTTGGCATTAGAGTATTGAGAGGACCTTTCCATAGTACGAGAGGACCACGAAGGACATTGGTCTACTAGTTATCGTGTCCACGGTAAACGCTGGGTAGCCAAGTGCGGACACCGGTAGGTTGTCTTGATACATGAGGTGCAGGGTTAATCTCAACCGTCCCTGCAGGCGGAGACGGAGACTCTTCCCTGGTAGGCGGTGGAGATGGATTGACTTCCGCTGCAGGTGATCATTTGCAGGTGCAGGAGAAGGTGGGAGATGGAGCAGAGGTTGGAGGCGAAGTAGTGGTCTGA

mRNA sequence

ATGTTCCAAGGGTTGGGCTATTCGCCCATTAAAGTGGTATGTGAGCTGGGTTTAGGACATCGTGAGACAATTCGATCCATATCCAGTGTTGGCATTAGAGTATTGAGAGGACCTTTCCATAGGTTAATCTCAACCGTCCCTGCAGGCGGAGACGGAGACTCTTCCCTGGTAGGCGGTGGAGATGGATTGACTTCCGCTGCAGGTGATCATTTGCAGGTGCAGGAGAAGGTGGGAGATGGAGCAGAGGTTGGAGGCGAAGTAGTGGTCTGA

Coding sequence (CDS)

ATGTTCCAAGGGTTGGGCTATTCGCCCATTAAAGTGGTATGTGAGCTGGGTTTAGGACATCGTGAGACAATTCGATCCATATCCAGTGTTGGCATTAGAGTATTGAGAGGACCTTTCCATAGGTTAATCTCAACCGTCCCTGCAGGCGGAGACGGAGACTCTTCCCTGGTAGGCGGTGGAGATGGATTGACTTCCGCTGCAGGTGATCATTTGCAGGTGCAGGAGAAGGTGGGAGATGGAGCAGAGGTTGGAGGCGAAGTAGTGGTCTGA

Protein sequence

MFQGLGYSPIKVVCELGLGHRETIRSISSVGIRVLRGPFHRLISTVPAGGDGDSSLVGGGDGLTSAAGDHLQVQEKVGDGAEVGGEVVV

Homology

[Close]

BLAST of CmaCh09G009330.1 vs. ExPASy TrEMBL
Match: A0A2G2W5D6 (Protein TIC 214 OS=Capsicum baccatum OX=33114 GN=CQW23_19278 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   MFQGLGYSPIKVVCELGLGHRETIRSISSVGIRVLRGPF 40
           MFQGLGYSPIKVV ELG  HRET+RSIS VG+R L+GPF
Sbjct: 124 MFQGLGYSPIKVVRELGSEHRETVRSISGVGVRALKGPF 162

[Close]

BLAST of CmaCh09G009330.1 vs. ExPASy TrEMBL
Match: A0A7J8U070 (Uncharacterized protein (Fragment) OS=Gossypium klotzschianum OX=34286 GN=Goklo_028021 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MFQGLGYSPIKVVCELGLGHRETIRSISSVGIRVLRGPF 40
          MFQGLGYSPIK V ELG   RET+RSIS VGIR LRGPF
Sbjct: 1  MFQGLGYSPIKAVRELGSERRETVRSISGVGIRALRGPF 39

[Close]

BLAST of CmaCh09G009330.1 vs. ExPASy TrEMBL
Match: A0A445EIS7 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A02g010003 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MFQGLGYSPIKVVCELGLGHRETIRSISSVGIRVLRGPF 40
          MFQGLGYSPIK V ELG   RET+RSIS VG+R LRGPF
Sbjct: 1  MFQGLGYSPIKAVRELGSERRETVRSISGVGVRALRGPF 39

[Close]

BLAST of CmaCh09G009330.1 vs. ExPASy TrEMBL
Match: A0A0D2RH14 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G175800 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-07
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1  MFQGLGYSPIKVVCELGLGHRETIRSISSVGIRVLRGP 39
          MFQGLG SPIK V ELGL HRET+RSIS VG+R LRGP
Sbjct: 29 MFQGLGCSPIKAVRELGLEHRETVRSISGVGVRALRGP 66

[Close]

BLAST of CmaCh09G009330.1 vs. ExPASy TrEMBL
Match: A0A5J5QMD7 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D07G047700v1 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-07
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MFQGLGYSPIKVVCELGLGHRETIRSISSVGIRVLRGPF 40
          MFQGLG SPIKV+C+LG  H ET+ SIS VG+R LRGPF
Sbjct: 23 MFQGLGCSPIKVICKLGSKHPETVSSISGVGVRALRGPF 61

[Close]

BLAST of CmaCh09G009330.1 vs. NCBI nr
Match: PHT40424.1 (hypothetical protein CQW23_19278 [Capsicum baccatum])

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-08
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 1   MFQGLGYSPIKVVCELGLGHRETIRSISSVGIRVLRGPF 40
           MFQGLGYSPIKVV ELG  HRET+RSIS VG+R L+GPF
Sbjct: 124 MFQGLGYSPIKVVRELGSEHRETVRSISGVGVRALKGPF 162

[Close]

BLAST of CmaCh09G009330.1 vs. NCBI nr
Match: PPD95513.1 (hypothetical protein GOBAR_DD07449 [Gossypium barbadense])

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   MFQGLGYSPIKVVCELGLGHRETIRSISSVGIRVLRGPF 40
           MFQGL  SPIK VCELGL H ET+RSIS VG+R LRGPF
Sbjct: 128 MFQGLVCSPIKAVCELGLEHHETVRSISGVGVRALRGPF 166

[Close]

BLAST of CmaCh09G009330.1 vs. NCBI nr
Match: QHN91793.1 (uncharacterized protein DS421_17g578000 [Arachis hypogaea])

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MFQGLGYSPIKVVCELGLGHRETIRSISSVGIRVLRGPF 40
          MFQGLG SPIK VCELG   RET+RSIS VG+R LRGPF
Sbjct: 46 MFQGLGCSPIKAVCELGSERRETVRSISGVGVRALRGPF 84

[Close]

BLAST of CmaCh09G009330.1 vs. NCBI nr
Match: MBA0643759.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MFQGLGYSPIKVVCELGLGHRETIRSISSVGIRVLRGPF 40
          MFQGLGYSPIK V ELG   RET+RSIS VGIR LRGPF
Sbjct: 1  MFQGLGYSPIKAVRELGSERRETVRSISGVGIRALRGPF 39

[Close]

BLAST of CmaCh09G009330.1 vs. NCBI nr
Match: RYR75350.1 (hypothetical protein Ahy_A02g010003 [Arachis hypogaea])

HSP 1 Score: 64.7 bits (156), Expect = 4.6e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  MFQGLGYSPIKVVCELGLGHRETIRSISSVGIRVLRGPF 40
          MFQGLGYSPIK V ELG   RET+RSIS VG+R LRGPF
Sbjct: 1  MFQGLGYSPIKAVRELGSERRETVRSISGVGVRALRGPF 39

The following BLAST results are available for this feature:

BLAST of CmaCh09G009330.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh09G009330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G2W5D6	2.0e-08	79.49	Protein TIC 214 OS=Capsicum baccatum OX=33114 GN=CQW23_19278 PE=3 SV=1	[more]
A0A7J8U070	1.7e-07	79.49	Uncharacterized protein (Fragment) OS=Gossypium klotzschianum OX=34286 GN=Goklo_...	[more]
A0A445EIS7	2.2e-07	76.92	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A02g010003 PE=4 SV=1	[more]
A0A0D2RH14	2.9e-07	78.95	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G175800 PE=4 ...	[more]
A0A5J5QMD7	5.0e-07	71.79	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D07G047700v1 PE...	[more]

BLAST of CmaCh09G009330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
PHT40424.1	4.2e-08	79.49	hypothetical protein CQW23_19278 [Capsicum baccatum]	[more]
PPD95513.1	2.1e-07	76.92	hypothetical protein GOBAR_DD07449 [Gossypium barbadense]	[more]
QHN91793.1	2.1e-07	76.92	uncharacterized protein DS421_17g578000 [Arachis hypogaea]	[more]
MBA0643759.1	3.5e-07	79.49	hypothetical protein [Gossypium klotzschianum]	[more]
RYR75350.1	4.6e-07	76.92	hypothetical protein Ahy_A02g010003 [Arachis hypogaea]	[more]

BLAST of CmaCh09G009330.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh09G009330	CmaCh09G009330	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G009330.1:exon:1024	CmaCh09G009330.1:exon:1024	exon
CmaCh09G009330.1:exon:1023	CmaCh09G009330.1:exon:1023	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G009330.1:cds	CmaCh09G009330.1:cds_2	CDS
CmaCh09G009330.1:cds	CmaCh09G009330.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh09G009330.1	CmaCh09G009330.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0045490	pectin catabolic process
biological_process	GO:0015031	protein transport
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0045330	aspartyl esterase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030599	pectinesterase activity