CmaCh09G008700.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G008700.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-H2 finger protein ATL39-like
Location	Cma_Chr09: 4271141 .. 4271605 (-)
Sequence length	465
RNA-Seq Expression	CmaCh09G008700.1
Synteny	CmaCh09G008700.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATCCATTACTGACACTCCTCTTCCCCATGGAAACCATGGTTTCTGAATCGGCGTCTCCTCCAGTCATCGTCCACTACACCGTAACCCTAGACCTCCGGACCTCCATAATCTTCTCCGTCACTATAATCCTCTTCTTCCTATTTCTTTACCACGTCCTTAGCGGCTTCCTCCAGTGGTTCCTCAGCGGCCGGCGCGGTGGAGATGTGGAGGCGGGAATGGGAGAGGAGCGGCGGGTGAGGCGGGCGGAGAAGATGCCGGCGGCGGTGAGATTTGGGAGCGAGAGAATGGTGAGGAGGAGGAGCGAGGAGGAATGTGCGATATGTTTGGAGGAGTTTATGGCCGGAGAAAACTGCCAGGCGTTGCCGGAGTGCAACCATTTTTTTCATTCGGATTGTATTGATGTCTGGTTTAGCAAGAAATTTACGTGCCCGATCTGTCGCCATTGTATTGCAGCTTAG

mRNA sequence

ATGGCGGATCCATTACTGACACTCCTCTTCCCCATGGAAACCATGGTTTCTGAATCGGCGTCTCCTCCAGTCATCGTCCACTACACCGTAACCCTAGACCTCCGGACCTCCATAATCTTCTCCGTCACTATAATCCTCTTCTTCCTATTTCTTTACCACGTCCTTAGCGGCTTCCTCCAGTGGTTCCTCAGCGGCCGGCGCGGTGGAGATGTGGAGGCGGGAATGGGAGAGGAGCGGCGGGTGAGGCGGGCGGAGAAGATGCCGGCGGCGGTGAGATTTGGGAGCGAGAGAATGGTGAGGAGGAGGAGCGAGGAGGAATGTGCGATATGTTTGGAGGAGTTTATGGCCGGAGAAAACTGCCAGGCGTTGCCGGAGTGCAACCATTTTTTTCATTCGGATTGTATTGATGTCTGGTTTAGCAAGAAATTTACGTGCCCGATCTGTCGCCATTGTATTGCAGCTTAG

Coding sequence (CDS)

ATGGCGGATCCATTACTGACACTCCTCTTCCCCATGGAAACCATGGTTTCTGAATCGGCGTCTCCTCCAGTCATCGTCCACTACACCGTAACCCTAGACCTCCGGACCTCCATAATCTTCTCCGTCACTATAATCCTCTTCTTCCTATTTCTTTACCACGTCCTTAGCGGCTTCCTCCAGTGGTTCCTCAGCGGCCGGCGCGGTGGAGATGTGGAGGCGGGAATGGGAGAGGAGCGGCGGGTGAGGCGGGCGGAGAAGATGCCGGCGGCGGTGAGATTTGGGAGCGAGAGAATGGTGAGGAGGAGGAGCGAGGAGGAATGTGCGATATGTTTGGAGGAGTTTATGGCCGGAGAAAACTGCCAGGCGTTGCCGGAGTGCAACCATTTTTTTCATTCGGATTGTATTGATGTCTGGTTTAGCAAGAAATTTACGTGCCCGATCTGTCGCCATTGTATTGCAGCTTAG

Protein sequence

MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQWFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA

Homology

[Close]

BLAST of CmaCh09G008700.1 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 105 EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI 153
           EEC ICL +F+AGE  + LP+CNH FH  CID W ++  TCP CRHC+
Sbjct: 128 EECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCL 175

[Close]

BLAST of CmaCh09G008700.1 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.6e-12
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 105 EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI 153
           EEC ICL +F++GE  + LP+CNH FH  CID W     TCP CRHC+
Sbjct: 133 EECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCL 180

[Close]

BLAST of CmaCh09G008700.1 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 104 EEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI 153
           +EEC ICL +F++GE  + LP+CNH FH  CID W  +  TCP CR+C+
Sbjct: 132 DEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCL 180

[Close]

BLAST of CmaCh09G008700.1 vs. ExPASy Swiss-Prot
Match: Q94BY6 (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 105 EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI 153
           EEC ICL +F++GE  + LP+C+H FH  CID W  +  TCP CRHC+
Sbjct: 134 EECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCL 181

[Close]

BLAST of CmaCh09G008700.1 vs. ExPASy Swiss-Prot
Match: P0C035 (RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-11
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 106 ECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 155
           ECA+CL + + G+  + LP CNH FH DCID+WF    TCP+CR+ + +
Sbjct: 119 ECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167

[Close]

BLAST of CmaCh09G008700.1 vs. ExPASy TrEMBL
Match: A0A6J1IG67 (RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.6e-80
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60
           MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC 120
           WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC
Sbjct: 61  WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC 120

Query: 121 QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 155
           QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
Sbjct: 121 QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of CmaCh09G008700.1 vs. ExPASy TrEMBL
Match: A0A6J1F9E6 (RING-H2 finger protein ATL39-like OS=Cucurbita moschata OX=3662 GN=LOC111443298 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 7.6e-80
Identity = 152/154 (98.70%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60
           MADPLLTLLFPMETMVSESASPPV+VHYTVTLDLRTS+IFSVTIILFFLFLYHVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC 120
           WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC
Sbjct: 61  WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC 120

Query: 121 QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 155
           QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
Sbjct: 121 QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of CmaCh09G008700.1 vs. ExPASy TrEMBL
Match: A0A0A0L062 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.2e-63
Identity = 129/160 (80.62%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60
           M DPLLTLLFPMETMV ES SPPV+ HYTVTLD+RTSIIFS +IILFFLFL+HVLSGFLQ
Sbjct: 1   MGDPLLTLLFPMETMVPESPSPPVL-HYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQ 60

Query: 61  WFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFGSERMVRRRSEEECAICLEEF 120
           WFL  RR G    DVEA M EERR++RAEK  +P  VRFGSE+MVRRRSEEECAICLEEF
Sbjct: 61  WFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEF 120

Query: 121 MAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 155
           + GENCQALPECNHFFHS+CIDVWFSKKFTCPICR+C+AA
Sbjct: 121 LIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of CmaCh09G008700.1 vs. ExPASy TrEMBL
Match: A0A5A7VAT0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00330 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.0e-63
Identity = 128/160 (80.00%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60
           M DPLLTLLFPMETMV ES+SPPV+ HYTVTLDLRTSIIFS +IILFFLFL+HVLSGFLQ
Sbjct: 40  MGDPLLTLLFPMETMVPESSSPPVL-HYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 99

Query: 61  WFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFGSERMVRRRSEEECAICLEEF 120
           WFL  RR G    DVEA M EERR++RAEK  +P  V+FGSE+MVRRRSEEECAICLEEF
Sbjct: 100 WFLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEF 159

Query: 121 MAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 155
           +AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICR+C+AA
Sbjct: 160 LAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 198

[Close]

BLAST of CmaCh09G008700.1 vs. ExPASy TrEMBL
Match: A0A5D3D9M0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003920 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.0e-63
Identity = 128/160 (80.00%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60
           M DPLLTLLFPMETMV ES+SPPV+ HYTVTLDLRTSIIFS +IILFFLFL+HVLSGFLQ
Sbjct: 1   MGDPLLTLLFPMETMVPESSSPPVL-HYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQ 60

Query: 61  WFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFGSERMVRRRSEEECAICLEEF 120
           WFL  RR G    DVEA M EERR++RAEK  +P  V+FGSE+MVRRRSEEECAICLEEF
Sbjct: 61  WFLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEF 120

Query: 121 MAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 155
           +AGENCQALPEC+HFFHS+CI+VWFSKKFTCPICR+C+AA
Sbjct: 121 LAGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of CmaCh09G008700.1 vs. NCBI nr
Match: XP_022976597.1 (RING-H2 finger protein ATL39-like [Cucurbita maxima])

HSP 1 Score: 307.8 bits (787), Expect = 5.4e-80
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60
           MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC 120
           WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC
Sbjct: 61  WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC 120

Query: 121 QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 155
           QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
Sbjct: 121 QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of CmaCh09G008700.1 vs. NCBI nr
Match: XP_022936829.1 (RING-H2 finger protein ATL39-like [Cucurbita moschata])

HSP 1 Score: 306.2 bits (783), Expect = 1.6e-79
Identity = 152/154 (98.70%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60
           MADPLLTLLFPMETMVSESASPPV+VHYTVTLDLRTS+IFSVTIILFFLFLYHVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC 120
           WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC
Sbjct: 61  WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC 120

Query: 121 QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 155
           QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
Sbjct: 121 QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of CmaCh09G008700.1 vs. NCBI nr
Match: KAG6591965.1 (RING-H2 finger protein ATL77, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024836.1 RING-H2 finger protein ATL77, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301.6 bits (771), Expect = 3.9e-78
Identity = 150/154 (97.40%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60
           MADPLLTLLFPMET+VSESASPPV+VHYTVTLDLRTS+IFSVTIILFFLFLYHVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETIVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC 120
           WFLSGRRGGDVEAGMGEERRVR AEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC
Sbjct: 61  WFLSGRRGGDVEAGMGEERRVRWAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC 120

Query: 121 QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 155
           QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA
Sbjct: 121 QALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of CmaCh09G008700.1 vs. NCBI nr
Match: XP_023536164.1 (RING-H2 finger protein ATL39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.7 bits (761), Expect = 5.6e-77
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60
           MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLF+YHVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFIYHVLSGFLQ 60

Query: 61  WFLSGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC 120
           WFL GRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC
Sbjct: 61  WFLGGRRGGDVEAGMGEERRVRRAEKMPAAVRFGSERMVRRRSEEECAICLEEFMAGENC 120

Query: 121 QALPECNHFFHSDCIDVWFSKKFTCPICRH 151
           QALPECNHFFHSDCIDVWFSKKFTCPICRH
Sbjct: 121 QALPECNHFFHSDCIDVWFSKKFTCPICRH 150

[Close]

BLAST of CmaCh09G008700.1 vs. NCBI nr
Match: XP_031740449.1 (RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 4.6e-63
Identity = 129/160 (80.62%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60
           M DPLLTLLFPMETMV ES SPPV+ HYTVTLD+RTSIIFS +IILFFLFL+HVLSGFLQ
Sbjct: 1   MGDPLLTLLFPMETMVPESPSPPVL-HYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQ 60

Query: 61  WFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFGSERMVRRRSEEECAICLEEF 120
           WFL  RR G    DVEA M EERR++RAEK  +P  VRFGSE+MVRRRSEEECAICLEEF
Sbjct: 61  WFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEF 120

Query: 121 MAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 155
           + GENCQALPECNHFFHS+CIDVWFSKKFTCPICR+C+AA
Sbjct: 121 LIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of CmaCh09G008700.1 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 7.2e-14
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 105 EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI 153
           EEC ICL +F+AGE  + LP+CNH FH  CID W ++  TCP CRHC+
Sbjct: 128 EECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCL 175

[Close]

BLAST of CmaCh09G008700.1 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.7e-13
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 105 EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI 153
           EEC ICL +F++GE  + LP+CNH FH  CID W     TCP CRHC+
Sbjct: 133 EECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCL 180

[Close]

BLAST of CmaCh09G008700.1 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-12
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 104 EEECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI 153
           +EEC ICL +F++GE  + LP+CNH FH  CID W  +  TCP CR+C+
Sbjct: 132 DEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCL 180

[Close]

BLAST of CmaCh09G008700.1 vs. TAIR 10
Match: AT1G49200.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-12
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 105 EECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCI 153
           EEC ICL +F++GE  + LP+C+H FH  CID W  +  TCP CRHC+
Sbjct: 134 EECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCL 181

[Close]

BLAST of CmaCh09G008700.1 vs. TAIR 10
Match: AT1G53820.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-12
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 106 ECAICLEEFMAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 155
           ECA+CL + + G+  + LP CNH FH DCID+WF    TCP+CR+ + +
Sbjct: 119 ECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167

The following BLAST results are available for this feature:

BLAST of CmaCh09G008700.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS99	1.0e-12	58.33	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]
Q6NML0	6.6e-12	56.25	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]
P0C034	1.5e-11	53.06	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q94BY6	1.5e-11	54.17	RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1	[more]
P0C035	3.3e-11	48.98	RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1	[more]

BLAST of CmaCh09G008700.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IG67	2.6e-80	100.00	RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE...	[more]
A0A6J1F9E6	7.6e-80	98.70	RING-H2 finger protein ATL39-like OS=Cucurbita moschata OX=3662 GN=LOC111443298 ...	[more]
A0A0A0L062	2.2e-63	80.63	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 P...	[more]
A0A5A7VAT0	5.0e-63	80.00	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D9M0	5.0e-63	80.00	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CmaCh09G008700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022976597.1	5.4e-80	100.00	RING-H2 finger protein ATL39-like [Cucurbita maxima]	[more]
XP_022936829.1	1.6e-79	98.70	RING-H2 finger protein ATL39-like [Cucurbita moschata]	[more]
KAG6591965.1	3.9e-78	97.40	RING-H2 finger protein ATL77, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_023536164.1	5.6e-77	98.67	RING-H2 finger protein ATL39-like [Cucurbita pepo subsp. pepo]	[more]
XP_031740449.1	4.6e-63	80.63	RING-H2 finger protein ATL39-like [Cucumis sativus]	[more]

BLAST of CmaCh09G008700.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18773.1	7.2e-14	58.33	RING/U-box superfamily protein	[more]
AT1G49210.1	4.7e-13	56.25	RING/U-box superfamily protein	[more]
AT1G49220.1	1.0e-12	53.06	RING/U-box superfamily protein	[more]
AT1G49200.1	1.0e-12	54.17	RING/U-box superfamily protein	[more]
AT1G53820.1	2.3e-12	48.98	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 5.1E-7 score: 39.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..149 e-value: 3.7E-13 score: 49.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 12.533537
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 73..153 e-value: 4.1E-19 score: 70.0
None	No IPR available	PANTHER	PTHR14155:SF493	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 23..77 coord: 79..152
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 79..152
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 23..77
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 106..149 e-value: 2.00626E-16 score: 66.5565
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 102..152

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh09G008700	CmaCh09G008700	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G008700.1:exon:1199	CmaCh09G008700.1:exon:1199	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G008700.1:cds	CmaCh09G008700.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh09G008700.1	CmaCh09G008700.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane