CmaCh08G005140.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G005140.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr08: 2962737 .. 2964665 (+)
Sequence length	330
RNA-Seq Expression	CmaCh08G005140.1
Synteny	CmaCh08G005140.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGTTCATCGATATTCTTGACGCTAGCGTCAGGATTGTTGCCAGATTTCATTCGCATTGTCCTCAAACTGGCCGGATGTACTACCATCCGCCGGATAACTCCGACGATGGCCATCATTCTGACAACCAGGAGGAGCTTCGCCTCAGGGACGGCGCTCGCGATGTGTCGTCTAATCAGATCGGTCGTTGTGATGCCGAGGCCGCGGTCGCGGCCGCCGTTCTCGGCGGCGATGTGTCGTCTCATCAGGTTATTCGTCGTGGTGCCGAGGCCGCCGTTGTCGGCGGTGGCGTTGAGAGTAATGAGTTTATTCTTTACTCTGTCTGATTGCAATTGAATTAGAGAAGCTCTGGAATGTTCTTGAGATTTCTTTCAAATCATGAAAAAAAAAAATCGATAAGTAGTTTTCGATTTGATTTCCCCTTTTTGTTTTGATGATGATATTTCATTCGTTAAGAGATGCGGACCGATCGCATCCTGATTGTTTTAACGATGATCATTATTGAAATTGATGCTTTACAAACATACCGATTTCTGGTTATGAGTTCATGTTCTTGAGTTTTTTTTTTTTTTTCTTTTCCTTCTTTCTCTCCCAGGAAAGTACGCGAGAAAATTGTGAGAATTTTTTTTGTCTCGTTTGATAATGTGAAAAAGAAGAGAAAAGAATCTGAAACAAATTAGACTTGGCATTAAAAGCTCCTAATTATAGTAATTTAATCTGACATTTATGGATTTCTGTTTCCACCCGTGACCTCCAAGAAAAGTTTACTTACCATTCTCATCCTCATTCTCTGTGTTTATTTCATTTTCGCCATTCTAATTTTGAAATTTCCAATTCCCTACCTATAGTTTTATGTGATTACTTGGCATATAAGGTAAGGAATTAATTAAAGGAGACAAGTTTGAGTGTCATCTTCCCTCCAGCCCTAGACAACCAGTACTCCCTTCATACGGTTCATCACATCATCAAAATCTAGTGTCTTTGCTGACATAATCTTGCGAGCGGTCAGAGCACGGCCTCTGTTGCACGGCTCAAACTCATTTTGTACTTTGTGTTGGATGATTAAAGTCCTACATCGGCTAATTTAAGGAATGATCATGAGTTTATAAGTGAGGAATACTAACTTCATTGGTATGAGACCTTTTAGGAAGCCCAAAGCAAAGTCATGAGAGCTTATGCTCAAAGTGAACAATATCATACCATTATGGAAAGTCATGTTTATCTAACATGGTATCAGAGTCATGCCCTAAACTTAGCCGTGCCAATAGATTGGCAAATCCTCGAATGTCCAACAAAGGACTCCAAAAAGAAAAAATGAGTCAAGCCTCCTCGAAGGTACGAAGGCAGTAAAAAATGACTAAGACTCCAAATGAGTCGAGTCTCGATTAAGGGGAGGCGTGCTTTGTTCAAAGGGAGGTGTTGGATGATGAAAATGACTAAGACTCCAAAGGAGTCGAGCCTCGATTAAGGGGAGACGTGCTTTGTTCGAGGGGAGGTGTTGGATGATGAAAGTCTCACATCGGCTCATTTAGAGAATGATCATGGGTTTATAAATGAGGAATACTAACTCCACTGTTATGAGGCCTTTTGGGAAGCCCAAAGGAAAGTCATGAGAGTTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACATTTTGTAATAATTATAAATTAAAATCAGTAAAAATTCGAGCACATATTTTTAAAAGTAAACTTTAAAGGGAAGTAGTTTGTGTCTAATACATTTTTAAATTTAAAAATGTTAAAAATACTTTAATATATATTTCACTTAATTTTCCTTATCGTGTGACGTAGGGATGGAATTTCAATAATGGTCTTCTAGATGTTCTATGCTCACTTTTCAATGTAAAGGTTTTTTTTTTTTAAATTTTTATTTTAGAATTAG

mRNA sequence

ATGGGGAAGTTCATCGATATTCTTGACGCTAGCGTCAGGATTGTTGCCAGATTTCATTCGCATTGTCCTCAAACTGGCCGGATGTACTACCATCCGCCGGATAACTCCGACGATGGCCATCATTCTGACAACCAGGAGGAGCTTCGCCTCAGGGACGGCGCTCGCGATGTGTCGTCTAATCAGATCGGTCGTTGTGATGCCGAGGCCGCGGTCGCGGCCGCCGTTCTCGGCGGCGATGTGTCGTCTCATCAGGTTATTCGTCGTGGTGCCGAGGCCGCCGTTGTCGGCGGTGGCGTTGAGAGTAATGAGTTTATTCTTTACTCTAATTAG

Coding sequence (CDS)

ATGGGGAAGTTCATCGATATTCTTGACGCTAGCGTCAGGATTGTTGCCAGATTTCATTCGCATTGTCCTCAAACTGGCCGGATGTACTACCATCCGCCGGATAACTCCGACGATGGCCATCATTCTGACAACCAGGAGGAGCTTCGCCTCAGGGACGGCGCTCGCGATGTGTCGTCTAATCAGATCGGTCGTTGTGATGCCGAGGCCGCGGTCGCGGCCGCCGTTCTCGGCGGCGATGTGTCGTCTCATCAGGTTATTCGTCGTGGTGCCGAGGCCGCCGTTGTCGGCGGTGGCGTTGAGAGTAATGAGTTTATTCTTTACTCTAATTAG

Protein sequence

MGKFIDILDASVRIVARFHSHCPQTGRMYYHPPDNSDDGHHSDNQEELRLRDGARDVSSNQIGRCDAEAAVAAAVLGGDVSSHQVIRRGAEAAVVGGGVESNEFILYSN

Homology

[Close]

BLAST of CmaCh08G005140.1 vs. TAIR 10
Match: AT3G57450.1 (unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-11
Identity = 36/85 (42.35%), Postives = 44/85 (51.76%), Query Frame = 0


Query: 1  MGKFIDILDASVRIVARFHSHCPQTGRMYYHPPDNSDDGHHSDNQEELRLRDGARDVSSN 60
          MGK+ ++LD  VRI ARFHSHCPQT R+YYHPP  SD+ HH    ++L    G      N
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPP--SDNHHHHGGVKDLIGGGGVLGSGQN 60

Query: 61 QIGRCDAEAAVAAAVLGGDVSSHQV 86
            G             G  + S QV
Sbjct: 61 STGLVGGLGTGTGTTGGCGIKSSQV 83

The following BLAST results are available for this feature:

BLAST of CmaCh08G005140.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh08G005140.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57450.1	2.4e-11	42.35	unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..47
None	No IPR available	PANTHER	PTHR33983:SF10	SUBFAMILY NOT NAMED	coord: 1..108
None	No IPR available	PANTHER	PTHR33983	OS07G0185900 PROTEIN	coord: 1..108

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh08G005140	CmaCh08G005140	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh08G005140.1:exon:859	CmaCh08G005140.1:exon:859	exon
CmaCh08G005140.1:exon:858	CmaCh08G005140.1:exon:858	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh08G005140.1:cds	CmaCh08G005140.1:cds	CDS
CmaCh08G005140.1:cds	CmaCh08G005140.1:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh08G005140.1	CmaCh08G005140.1-protein	polypeptide