CmaCh07G013520.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G013520.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionlycopene beta cyclase, chloroplastic/chromoplastic-like
LocationCma_Chr07: 7698291 .. 7698674 (-)
Sequence length312
RNA-Seq ExpressionCmaCh07G013520.1
SyntenyCmaCh07G013520.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAAAAGCAATGGAGACATCGAATTGAGCGAGCGATGTTCACGCCAATTGTCACCACCATTAATTGGCAAGTACGGGGCCATGCCCCAAGTGGGGACACGCCCAAATCCCCAATCTTCTCCAATTCCTCTAATTTCCATCTCTTGGAGAAGAGTGGACGGCAGCGTCAGTTCATCAATTGGGCACTGGCCACACGCATTCCACATCTCTCCAATCCACTGGAACCAAATGGAGCTCCTTCCGCCTCCTCAGGTTCGCCTCAAAACACACGCCTCTTAATCTTTAACACCGATTTCCATTGAATTTATCCTGATTCTTGTTCAGTTCTTGAGCTTATACTTGCGTGAGATTTCTGGATATTGGGTTTCTGTGGGGATTCCTTGA

mRNA sequence

TTTAAAAGCAATGGAGACATCGAATTGAGCGAGCGATGTTCACGCCAATTGTCACCACCATTAATTGGCAAGTACGGGGCCATGCCCCAAGTGGGGACACGCCCAAATCCCCAATCTTCTCCAATTCCTCTAATTTCCATCTCTTGGAGAAGAGTGGACGGCAGCGTCAGTTCATCAATTGGGCACTGGCCACACGCATTCCACATCTCTCCAATCCACTGGAACCAAATGGAGCTCCTTCCGCCTCCTCAGTTCTTGAGCTTATACTTGCGTGAGATTTCTGGATATTGGGTTTCTGTGGGGATTCCTTGA

Coding sequence (CDS)

ATGCCCCAAGTGGGGACACGCCCAAATCCCCAATCTTCTCCAATTCCTCTAATTTCCATCTCTTGGAGAAGAGTGGACGGCAGCGTCAGTTCATCAATTGGGCACTGGCCACACGCATTCCACATCTCTCCAATCCACTGGAACCAAATGGAGCTCCTTCCGCCTCCTCAGTTCTTGAGCTTATACTTGCGTGAGATTTCTGGATATTGGGTTTCTGTGGGGATTCCTTGA

Protein sequence

MPQVGTRPNPQSSPIPLISISWRRVDGSVSSSIGHWPHAFHISPIHWNQMELLPPPQFLSLYLREISGYWVSVGIP
Homology
[Close]
BLAST of CmaCh07G013520.1 vs. ExPASy TrEMBL
Match: A0A6J1HT73 (lycopene beta cyclase, chloroplastic/chromoplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111465974 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MPQVGTRPNPQSSPIPLISISWRRVDGSVSSSIGHWPHAFHISPIHWNQMELLPPPQ 58
          MPQVGTRPNPQSSPIPLISISWRRVDGSVSSSIGHWPHAFHISPIHWNQMELLPPPQ
Sbjct: 1  MPQVGTRPNPQSSPIPLISISWRRVDGSVSSSIGHWPHAFHISPIHWNQMELLPPPQ 57

[Close]
BLAST of CmaCh07G013520.1 vs. NCBI nr
Match: XP_022966259.1 (lycopene beta cyclase, chloroplastic/chromoplastic-like [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 3.8e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MPQVGTRPNPQSSPIPLISISWRRVDGSVSSSIGHWPHAFHISPIHWNQMELLPPPQ 58
          MPQVGTRPNPQSSPIPLISISWRRVDGSVSSSIGHWPHAFHISPIHWNQMELLPPPQ
Sbjct: 1  MPQVGTRPNPQSSPIPLISISWRRVDGSVSSSIGHWPHAFHISPIHWNQMELLPPPQ 57

The following BLAST results are available for this feature:
BLAST of CmaCh07G013520.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G013520.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HT731.8e-26100.00lycopene beta cyclase, chloroplastic/chromoplastic-like OS=Cucurbita maxima OX=3... [more]
BLAST of CmaCh07G013520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022966259.13.8e-26100.00lycopene beta cyclase, chloroplastic/chromoplastic-like [Cucurbita maxima][more]
BLAST of CmaCh07G013520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh07G013520CmaCh07G013520gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G013520.1:exon:98CmaCh07G013520.1:exon:98exon
CmaCh07G013520.1:exon:97CmaCh07G013520.1:exon:97exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G013520.1:cdsCmaCh07G013520.1:cds_2CDS
CmaCh07G013520.1:cdsCmaCh07G013520.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G013520.1:five_prime_utrCmaCh07G013520.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh07G013520.1CmaCh07G013520.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016117 carotenoid biosynthetic process
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen