CmaCh07G010850.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G010850.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	sigma factor binding protein 2, chloroplastic-like
Location	Cma_Chr07: 5804939 .. 5805436 (-)
Sequence length	498
RNA-Seq Expression	CmaCh07G010850.1
Synteny	CmaCh07G010850.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGCGGCGGTGGCGGCGGCAACCTCAACGACCACACAGATCTCGGCGGCGTCCGCCGACGAAAGCCGACGAAGAAAACAAAACAACCCAACAACAAAAAGAAACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAATTTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACCCGTCTAAGTTCGACTCCTCCGACGAAGTTGCCGGAGCCACCCCCGGCCTCCTCCACAGCACGGCCGCCGCCGGCCAGGAATATGGTAGTCTAATGATGAATAATAATATCCCTACTACACTTGGTGTTGAGCTGCCGGCCGAGGACTTCCTTGTTGGTAGCTTTTATGATGACTTTGATGACCTGATTCTTCCTCCTCCACTCATCGGAAACTTCTCCGGATTTCTACCAGCGGCTGAGGCAACGGCGGCGGCGATGATGTATGAATCTTATGCAATGTGA

mRNA sequence

ATGGACGGCGGCGGTGGCGGCGGCAACCTCAACGACCACACAGATCTCGGCGGCGTCCGCCGACGAAAGCCGACGAAGAAAACAAAACAACCCAACAACAAAAAGAAACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAATTTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACCCGTCTAAGTTCGACTCCTCCGACGAAGTTGCCGGAGCCACCCCCGGCCTCCTCCACAGCACGGCCGCCGCCGGCCAGGAATATGGTAGTCTAATGATGAATAATAATATCCCTACTACACTTGGTGTTGAGCTGCCGGCCGAGGACTTCCTTGTTGGTAGCTTTTATGATGACTTTGATGACCTGATTCTTCCTCCTCCACTCATCGGAAACTTCTCCGGATTTCTACCAGCGGCTGAGGCAACGGCGGCGGCGATGATGTATGAATCTTATGCAATGTGA

Coding sequence (CDS)

ATGGACGGCGGCGGTGGCGGCGGCAACCTCAACGACCACACAGATCTCGGCGGCGTCCGCCGACGAAAGCCGACGAAGAAAACAAAACAACCCAACAACAAAAAGAAACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAATTTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACCCGTCTAAGTTCGACTCCTCCGACGAAGTTGCCGGAGCCACCCCCGGCCTCCTCCACAGCACGGCCGCCGCCGGCCAGGAATATGGTAGTCTAATGATGAATAATAATATCCCTACTACACTTGGTGTTGAGCTGCCGGCCGAGGACTTCCTTGTTGGTAGCTTTTATGATGACTTTGATGACCTGATTCTTCCTCCTCCACTCATCGGAAACTTCTCCGGATTTCTACCAGCGGCTGAGGCAACGGCGGCGGCGATGATGTATGAATCTTATGCAATGTGA

Protein sequence

MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALVQELTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAEDFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYAM

Homology

[Close]

BLAST of CmaCh07G010850.1 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 22 RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALVQELTGQDA-DF-PDPSKFDSS 81
          RK  K+ K+  +  KPIKV YISNPM+V+T AS F  LVQELTGQDA D  P+P    SS
Sbjct: 24 RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

[Close]

BLAST of CmaCh07G010850.1 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.6e-06
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 22 RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALVQELTGQD-ADF-PDPSKFDSS 81
          R P K+ ++     KPIKV YISNPM+V+T  S F  LVQELTGQD AD  P P+ F + 
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

[Close]

BLAST of CmaCh07G010850.1 vs. ExPASy TrEMBL
Match: A0A6J1HSP6 (uncharacterized protein LOC111466266 OS=Cucurbita maxima OX=3661 GN=LOC111466266 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.3e-85
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60
           MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV
Sbjct: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60

Query: 61  QELTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAE 120
           QELTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAE
Sbjct: 61  QELTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAE 120

Query: 121 DFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYAM 166
           DFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYAM
Sbjct: 121 DFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYAM 165

[Close]

BLAST of CmaCh07G010850.1 vs. ExPASy TrEMBL
Match: A0A6J1F0S9 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438200 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.0e-74
Identity = 150/163 (92.02%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 3   GGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALVQE 62
           GGGGGGN NDHT LGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSAS FMALVQE
Sbjct: 4   GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQE 63

Query: 63  LTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAEDF 122
           LTGQDADFPDPSKF SSDE AGATP LLHST AAGQ+Y SLMMNNNIPTTLGVELPAED+
Sbjct: 64  LTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPAEDY 123

Query: 123 LVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYAM 166
           LVGSFYDDFDDLILPPPLIGNFSGFLPAAE  AAA+MYESYAM
Sbjct: 124 LVGSFYDDFDDLILPPPLIGNFSGFLPAAE--AAAVMYESYAM 164

[Close]

BLAST of CmaCh07G010850.1 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 104/166 (62.65%), Postives = 119/166 (71.69%), Query Frame = 0


Query: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60
           MDG  G G  N H  L GV RRKPTKKTKQP NK KPIKVVYISNPMKV+ SAS FMALV
Sbjct: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKTKQP-NKNKPIKVVYISNPMKVQISASGFMALV 60

Query: 61  QELTGQDADFPDPSKF-DSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPA 120
           Q+LTGQDADFPDPS F  ++   A A P + ++TA A       +MNNN P +L VE+P 
Sbjct: 61  QQLTGQDADFPDPSTFPPAAVRDAAAFPDIHNTTADAN------LMNNNNP-SLTVEIPM 120

Query: 121 EDF-LVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYA 165
           ED   +GSFYDD DDLI PPP+IGN+   LPAA AT  A++YESYA
Sbjct: 121 EDDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAAT--AVLYESYA 156

[Close]

BLAST of CmaCh07G010850.1 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.5e-38
Identity = 104/169 (61.54%), Postives = 125/169 (73.96%), Query Frame = 0


Query: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNK-KKPIKVVYISNPMKVKTSASNFMAL 60
           MD G   G  +DH  L  V RRKPTKKTKQP N+ KKPIKVVYISNPMKV+TSAS FMAL
Sbjct: 1   MDAGTATG--SDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMAL 60

Query: 61  VQELTGQDADFPDPSKFDSSDEVAGA--TPGLLHSTAAAGQEYG--SLMMNNNIPTTLGV 120
           VQELTGQDADFPDPSKF  S    GA  T  L ++ ++ G++ G  +L++N+N  ++L  
Sbjct: 61  VQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSN-NSSLVD 120

Query: 121 ELPAEDFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYA 165
           E+PAED ++GSFYDDFDDLI P P+IGNFSG LP   A  AA++YES A
Sbjct: 121 EVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP---APVAAVVYESNA 163

[Close]

BLAST of CmaCh07G010850.1 vs. ExPASy TrEMBL
Match: A0A6J1HS32 (sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467277 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 104/165 (63.03%), Postives = 117/165 (70.91%), Query Frame = 0


Query: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60
           MDG  G G  N H  L GV RRKPTKKTKQP NK KPIKVVYISNPMKV+ SAS FMALV
Sbjct: 1   MDGSAGTGTGNSHRLLDGVHRRKPTKKTKQP-NKNKPIKVVYISNPMKVQISASGFMALV 60

Query: 61  QELTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAE 120
           Q+LTGQDA+FPD SKF      A A P +  +TA A     +LMMNNN   +L VE P E
Sbjct: 61  QQLTGQDAEFPDSSKFPP----AAAFPDIHDTTADA-----NLMMNNN--PSLTVEPPME 120

Query: 121 DF-LVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYA 165
           D  L+G+FYDD DDLI PPP+IGN+   LPAA AT  A++YESYA
Sbjct: 121 DDPLLGTFYDDIDDLIFPPPVIGNYPALLPAAAAT--AVLYESYA 151

[Close]

BLAST of CmaCh07G010850.1 vs. NCBI nr
Match: XP_022966643.1 (uncharacterized protein LOC111466266 [Cucurbita maxima])

HSP 1 Score: 325.5 bits (833), Expect = 2.7e-85
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60
           MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV
Sbjct: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60

Query: 61  QELTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAE 120
           QELTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAE
Sbjct: 61  QELTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAE 120

Query: 121 DFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYAM 166
           DFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYAM
Sbjct: 121 DFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYAM 165

[Close]

BLAST of CmaCh07G010850.1 vs. NCBI nr
Match: KAG7027424.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.8 bits (743), Expect = 7.3e-75
Identity = 151/165 (91.52%), Postives = 154/165 (93.33%), Query Frame = 0


Query: 3   GGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALVQE 62
           GGGGGGN NDHT LGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSAS FMALVQE
Sbjct: 4   GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQE 63

Query: 63  LTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAEDF 122
           LTGQDADFPDPSKF SSDE AGATP LLHST AAGQ+Y SLMMNNNIPTTLGVELPAED+
Sbjct: 64  LTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPAEDY 123

Query: 123 LVGSFYDDFDDLILPPPLIGNFSGFLPAAE--ATAAAMMYESYAM 166
           LVGSFYDDFDDLILPPPLIGNFSGFLPAAE  A AAA+MYESYAM
Sbjct: 124 LVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYAM 168

[Close]

BLAST of CmaCh07G010850.1 vs. NCBI nr
Match: XP_022931925.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6595416.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289.3 bits (739), Expect = 2.1e-74
Identity = 150/163 (92.02%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 3   GGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALVQE 62
           GGGGGGN NDHT LGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSAS FMALVQE
Sbjct: 4   GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQE 63

Query: 63  LTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAEDF 122
           LTGQDADFPDPSKF SSDE AGATP LLHST AAGQ+Y SLMMNNNIPTTLGVELPAED+
Sbjct: 64  LTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPAEDY 123

Query: 123 LVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYAM 166
           LVGSFYDDFDDLILPPPLIGNFSGFLPAAE  AAA+MYESYAM
Sbjct: 124 LVGSFYDDFDDLILPPPLIGNFSGFLPAAE--AAAVMYESYAM 164

[Close]

BLAST of CmaCh07G010850.1 vs. NCBI nr
Match: XP_023518833.1 (uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283.9 bits (725), Expect = 9.0e-73
Identity = 148/166 (89.16%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60
           MDGGGGGGN NDHT LGGVRRRKPTKKT QPNNKKKPIKVVYISNPMKVKTSAS FMALV
Sbjct: 1   MDGGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALV 60

Query: 61  QELTGQDADFPDPSKFDSSDEVAGATPGLLHST-AAAGQEYGSLMMNNNIPTTLGVELPA 120
           QELTGQDADFPDPSKF SSD  AGATP LLHST AAA Q+Y SL MNNNIPTTLGVELPA
Sbjct: 61  QELTGQDADFPDPSKFHSSDVDAGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPA 120

Query: 121 EDFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYAM 166
           ED+L+GSFYDDFDDLILPPPLIGNFS FLPAAEA AAA+MYESYAM
Sbjct: 121 EDYLLGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYESYAM 166

[Close]

BLAST of CmaCh07G010850.1 vs. NCBI nr
Match: XP_038882812.1 (sigma factor binding protein 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 184.9 bits (468), Expect = 5.7e-43
Identity = 112/169 (66.27%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60
           M+ G   G  N+H  L  V RRKPTKKTKQP NKKKPIKVVYISNPMKV+TSAS FMALV
Sbjct: 1   MNAGADTG--NNHRILDAVNRRKPTKKTKQP-NKKKPIKVVYISNPMKVQTSASKFMALV 60

Query: 61  QELTGQDADFPDPSKFDSSDEVAG-ATPGLLHSTAAAG--QEYG--SLMMNNNIPTTLGV 120
           QELTG+DADFPDPSKF  S    G A+  LLH+TA+ G   E+G  +L+MNNN   +L V
Sbjct: 61  QELTGRDADFPDPSKFSPSAVCGGAASSDLLHNTASGGGDDEHGASNLIMNNN-NCSLAV 120

Query: 121 ELPAEDFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYA 165
           ELP +D ++GSFYDDFDDLI PPP+IGNFSG LPA    AAA++YESYA
Sbjct: 121 ELPVDDDILGSFYDDFDDLIFPPPVIGNFSGLLPA----AAAVVYESYA 161

[Close]

BLAST of CmaCh07G010850.1 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 57.8 bits (138), Expect = 9.8e-09
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 22 RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALVQELTGQDA-DF-PDPSKFDSS 81
          RK  K+ K+  +  KPIKV YISNPM+V+T AS F  LVQELTGQDA D  P+P    SS
Sbjct: 24 RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

[Close]

BLAST of CmaCh07G010850.1 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 22 RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALVQELTGQD-ADF-PDPSKFDSS 81
          R P K+ ++     KPIKV YISNPM+V+T  S F  LVQELTGQD AD  P P+ F + 
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

The following BLAST results are available for this feature:

BLAST of CmaCh07G010850.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	1.4e-07	58.06	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	2.6e-06	54.10	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CmaCh07G010850.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HSP6	1.3e-85	100.00	uncharacterized protein LOC111466266 OS=Cucurbita maxima OX=3661 GN=LOC111466266...	[more]
A0A6J1F0S9	1.0e-74	92.02	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1EY87	1.6e-38	62.65	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A0A0L3J8	4.5e-38	61.54	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A6J1HS32	1.3e-37	63.03	sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxim...	[more]

BLAST of CmaCh07G010850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022966643.1	2.7e-85	100.00	uncharacterized protein LOC111466266 [Cucurbita maxima]	[more]
KAG7027424.1	7.3e-75	91.52	Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_022931925.1	2.1e-74	92.02	sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6595...	[more]
XP_023518833.1	9.0e-73	89.16	uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo]	[more]
XP_038882812.1	5.7e-43	66.27	sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]	[more]

BLAST of CmaCh07G010850.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	9.8e-09	58.06	sigma factor binding protein 1	[more]
AT2G41180.1	1.8e-07	54.10	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 43..68 e-value: 4.8E-13 score: 48.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 20..151
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 20..151

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh07G010850	CmaCh07G010850	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh07G010850.1:exon:1702	CmaCh07G010850.1:exon:1702	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh07G010850.1:cds	CmaCh07G010850.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh07G010850.1	CmaCh07G010850.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity