CmaCh07G003580.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G003580.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr07: 1534163 .. 1534564 (-)
Sequence length402
RNA-Seq ExpressionCmaCh07G003580.1
SyntenyCmaCh07G003580.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTGCATCAGCTCACCCCATCTCCCGCCGTTCCAAAGGATCAAGGATTTCATGTGTTTGCATGAAGAACTCTACGATTTGGCTGAGCCAGTTGAGAAGATCGCTGGCCTAAAGCTAACAAGGGCGGTGCTAGTAGTTGGGCGTGGGGCTGCTACGCCTCCCGCTCATGTTCTTATTGATGATGATGATGATATTACCAAGCCTGCAGCTTTGTGCAAACTTCCCAAGGCCACCATTGTTGTTAGCAAACAACAGCTCGAGTTTCTTTTGACAAACTCCGAACAGTTTGGCTCTCAAGGCATTGCTGTTCAATTCTCTGATCGTTTCAAGTTTGACCAATCGTGTTCTAAATGGTGCCCCGCCTTACCCACCATTCTCGAAGTTCATAATTACTAA

mRNA sequence

ATGGGAAATTGCATCAGCTCACCCCATCTCCCGCCGTTCCAAAGGATCAAGGATTTCATGTGTTTGCATGAAGAACTCTACGATTTGGCTGAGCCAGTTGAGAAGATCGCTGGCCTAAAGCTAACAAGGGCGGTGCTAGTAGTTGGGCGTGGGGCTGCTACGCCTCCCGCTCATGTTCTTATTGATGATGATGATGATATTACCAAGCCTGCAGCTTTGTGCAAACTTCCCAAGGCCACCATTGTTGTTAGCAAACAACAGCTCGAGTTTCTTTTGACAAACTCCGAACAGTTTGGCTCTCAAGGCATTGCTGTTCAATTCTCTGATCGTTTCAAGTTTGACCAATCGTGTTCTAAATGGTGCCCCGCCTTACCCACCATTCTCGAAGTTCATAATTACTAA

Coding sequence (CDS)

ATGGGAAATTGCATCAGCTCACCCCATCTCCCGCCGTTCCAAAGGATCAAGGATTTCATGTGTTTGCATGAAGAACTCTACGATTTGGCTGAGCCAGTTGAGAAGATCGCTGGCCTAAAGCTAACAAGGGCGGTGCTAGTAGTTGGGCGTGGGGCTGCTACGCCTCCCGCTCATGTTCTTATTGATGATGATGATGATATTACCAAGCCTGCAGCTTTGTGCAAACTTCCCAAGGCCACCATTGTTGTTAGCAAACAACAGCTCGAGTTTCTTTTGACAAACTCCGAACAGTTTGGCTCTCAAGGCATTGCTGTTCAATTCTCTGATCGTTTCAAGTTTGACCAATCGTGTTCTAAATGGTGCCCCGCCTTACCCACCATTCTCGAAGTTCATAATTACTAA

Protein sequence

MGNCISSPHLPPFQRIKDFMCLHEELYDLAEPVEKIAGLKLTRAVLVVGRGAATPPAHVLIDDDDDITKPAALCKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFDQSCSKWCPALPTILEVHNY
Homology
BLAST of CmaCh07G003580.1 vs. ExPASy TrEMBL
Match: A0A0A0KHP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.7e-30
Identity = 73/136 (53.68%), Postives = 86/136 (63.24%), Query Frame = 0

Query: 1   MGNCISSPHLPPFQRIKDFMCLHEELYDLAEPVEKIAGLK---LTRAVLVVGRGAATPPA 60
           MGNCI++ H PP Q+IK F+C   E  +LA P+E IA  K    T +  V        P 
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  HVLIDDDDDITKPAALCKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFDQSC 120
            + +  D  I KPA LCKLPK TIVVSKQQLE +L  S+ FGS+GIAVQFSD FK D  C
Sbjct: 61  PLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDDGC 120

Query: 121 SKWCPALPTILEVHNY 134
            +W PALPTI EV NY
Sbjct: 121 PRWHPALPTIPEVRNY 136

BLAST of CmaCh07G003580.1 vs. ExPASy TrEMBL
Match: A0A5D3CLY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00250 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.4e-28
Identity = 73/139 (52.52%), Postives = 85/139 (61.15%), Query Frame = 0

Query: 1   MGNCISSPHLPPFQRIKDFMCLHEELYDLAEPVEKIAGL------KLTRAVLVVGRGAAT 60
           MGNCI++ H PP Q+IK F+C   E  DL  P+  +A          T +  V     + 
Sbjct: 1   MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVAAYGDCKSQAFTTSSAVAEVQHSP 60

Query: 61  PPAHVLIDDDDDITKPAALCKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFD 120
           PP  V I  D  I KPA   KLPKATIVVSKQQLE +L  S+ FGS+GIAVQFSDRFK D
Sbjct: 61  PPLPVRI--DHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFKVD 120

Query: 121 QSCSKWCPALPTILEVHNY 134
             C +W PALPTI EV NY
Sbjct: 121 DGCPRWHPALPTIPEVRNY 137

BLAST of CmaCh07G003580.1 vs. ExPASy TrEMBL
Match: B9HD50 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.8e-06
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 74  CKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFDQSCSKWCPALPTILEVHNY 133
           C   K  IVV++QQLE LL NS+QF S+GIAV+FS+ FK  +   KW P+L TI EV  +
Sbjct: 93  CASRKVKIVVTRQQLELLLRNSKQFRSKGIAVRFSESFK--EGERKWRPSLVTIPEVQKF 150

BLAST of CmaCh07G003580.1 vs. ExPASy TrEMBL
Match: A0A5N5M953 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 54/152 (35.53%), Postives = 74/152 (48.68%), Query Frame = 0

Query: 1   MGNCISSPHLPPFQRIKDFMCLH---EELYDLAEPVEKIAGLKLTRAVLVVGRG---AAT 60
           MGNCI        +R K  + +H   E+ +  + PV+KI   +    +L V R    A  
Sbjct: 1   MGNCIDFMPCSSGERSK--VLIHNGGEKEFKSSTPVKKITSGRYGGYIL-VNRALPYAPL 60

Query: 61  PPAHVLIDDD-----DDITKPAAL-----------CKLPKATIVVSKQQLEFLLTNSEQF 120
           PP  VL   +       + +P+ L           C   K  IVV++QQLE LL NS+Q 
Sbjct: 61  PPDTVLEPGEVYHLMPPLDQPSRLEVSSKLTGQEACAGRKVKIVVTRQQLELLLRNSKQL 120

Query: 121 GSQGIAVQFSDRFKFDQSCSKWCPALPTILEV 131
             +GIAVQFS+ FK  +   KW P+L TI EV
Sbjct: 121 KLRGIAVQFSESFK--EGKRKWQPSLVTIPEV 147

BLAST of CmaCh07G003580.1 vs. ExPASy TrEMBL
Match: A0A0B2RPL4 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_040647 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.9e-04
Identity = 44/141 (31.21%), Postives = 61/141 (43.26%), Query Frame = 0

Query: 1   MGNCISSPHLPPFQRIKDFMCLHEELYDLAEPVEKIAGLKLTRAVLV---VGRGAATPPA 60
           MGNC+     P  Q     +   E   D + PVEKI      R ++V   +  G     A
Sbjct: 1   MGNCMGYHSQPKKQTGYPLIEGRELEVDASMPVEKIKSASNKRYIVVRRKLRHGEVYQLA 60

Query: 61  HVLIDDDDDI-TKPAALCKLPKATIVVSKQQLEFLLTNSEQFGSQ----GIAVQFSDRFK 120
             ++  D    T      K     IVV+ ++LE L + S++F  +    G+   F  R  
Sbjct: 61  PFMLQSDMPFRTTNNRKLKTRSVKIVVTAEELESLFSGSKRFQIRRRIAGVRRSFGLR-- 120

Query: 121 FDQSCSKWCPALPTILEVHNY 134
               C KW P+LPTI EVHNY
Sbjct: 121 ---GCQKWLPSLPTIQEVHNY 136

BLAST of CmaCh07G003580.1 vs. NCBI nr
Match: KAG6594706.1 (hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215.7 bits (548), Expect = 2.4e-52
Identity = 108/133 (81.20%), Postives = 112/133 (84.21%), Query Frame = 0

Query: 1   MGNCISSPHLPPFQRIKDFMCLHEELYDLAEPVEKIAGLKLTRAVLVVGRGAATPPAHVL 60
           MGNCISSPH                LYDLA PVEKIAGLKLT AVL VGRGAATPPAHVL
Sbjct: 1   MGNCISSPH----------------LYDLAVPVEKIAGLKLTSAVLEVGRGAATPPAHVL 60

Query: 61  IDDDDDITKPAALCKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFDQSCSKW 120
           IDDDDDITKPAALCKLPKATIVVSK+QLEFLLTNS+QFGSQGIAVQFSD FKFD+SCS+W
Sbjct: 61  IDDDDDITKPAALCKLPKATIVVSKEQLEFLLTNSQQFGSQGIAVQFSDSFKFDRSCSRW 117

Query: 121 CPALPTILEVHNY 134
           CP LPTILEVHNY
Sbjct: 121 CPVLPTILEVHNY 117

BLAST of CmaCh07G003580.1 vs. NCBI nr
Match: KAG6603830.1 (hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 4.1e-36
Identity = 84/136 (61.76%), Postives = 97/136 (71.32%), Query Frame = 0

Query: 1   MGNCISSPHLPPFQRIKDFMCLHEELYDLAEPVEKIAGLKLT--RAVLVVGRGAATPPAH 60
           MGNCI++ H  P Q++KD +C   E   LA P+EKIA    T   AVL V RGA  PP  
Sbjct: 1   MGNCINTAHFRPLQKLKDLICCEGEDLSLALPIEKIASGAYTTSSAVLEVDRGA--PPLP 60

Query: 61  VLIDDDDDITKPAALCKLPK-ATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFDQSC 120
           V IDDDD ++KP ALCKLPK  TIVVSKQQLE +L NS +F S+GIAVQFSD F+ D  C
Sbjct: 61  VSIDDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIAVQFSDSFEVDDRC 120

Query: 121 SKWCPALPTILEVHNY 134
            +WCPALPTILEVHNY
Sbjct: 121 PRWCPALPTILEVHNY 134

BLAST of CmaCh07G003580.1 vs. NCBI nr
Match: KAA0025575.1 (hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK12450.1 hypothetical protein E5676_scaffold255G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 7.1e-28
Identity = 73/139 (52.52%), Postives = 85/139 (61.15%), Query Frame = 0

Query: 1   MGNCISSPHLPPFQRIKDFMCLHEELYDLAEPVEKIAGL------KLTRAVLVVGRGAAT 60
           MGNCI++ H PP Q+IK F+C   E  DL  P+  +A          T +  V     + 
Sbjct: 1   MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVAAYGDCKSQAFTTSSAVAEVQHSP 60

Query: 61  PPAHVLIDDDDDITKPAALCKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFD 120
           PP  V I  D  I KPA   KLPKATIVVSKQQLE +L  S+ FGS+GIAVQFSDRFK D
Sbjct: 61  PPLPVRI--DHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFKVD 120

Query: 121 QSCSKWCPALPTILEVHNY 134
             C +W PALPTI EV NY
Sbjct: 121 DGCPRWHPALPTIPEVRNY 137

BLAST of CmaCh07G003580.1 vs. NCBI nr
Match: KAE8647639.1 (hypothetical protein Csa_004428 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 70/132 (53.03%), Postives = 83/132 (62.88%), Query Frame = 0

Query: 1   MGNCISSPHLPPFQRIKDFMCLHEELYDLAEPVEKIAGLK---LTRAVLVVGRGAATPPA 60
           MGNCI++ H PP Q+IK F+C   E  +LA P+E IA  K    T +  V        P 
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  HVLIDDDDDITKPAALCKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFDQSC 120
            + +  D  I KPA LCKLPK TIVVSKQQLE +L  S+ FGS+GIAVQFSD FK D  C
Sbjct: 61  PLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDDGC 120

Query: 121 SKWCPALPTILE 130
            +W PALPTI E
Sbjct: 121 PRWHPALPTIPE 132

BLAST of CmaCh07G003580.1 vs. NCBI nr
Match: KAF9851460.1 (hypothetical protein H0E87_015599 [Populus deltoides])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-05
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 74  CKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFDQSCSKWCPALPTILEVHNY 133
           C   K  IVV++QQLE LL NS+QF S+GIAV+FS+ FK  +   KW P+L TI EV  +
Sbjct: 93  CASRKVKIVVTRQQLELLLRNSKQFRSKGIAVRFSESFK--EGERKWRPSLVTIPEVRKF 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KHP33.7e-3053.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1[more]
A0A5D3CLY83.4e-2852.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
B9HD504.8e-0653.33Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 ... [more]
A0A5N5M9531.4e-0535.53Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1[more]
A0A0B2RPL45.9e-0431.21Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_040647 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6594706.12.4e-5281.20hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603830.14.1e-3661.76hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0025575.17.1e-2852.52hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK1245... [more]
KAE8647639.11.2e-2753.03hypothetical protein Csa_004428 [Cucumis sativus][more]
KAF9851460.11.0e-0553.33hypothetical protein H0E87_015599 [Populus deltoides][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33148:SF50SUBFAMILY NOT NAMEDcoord: 12..131
NoneNo IPR availablePANTHERPTHR33148PLASTID MOVEMENT IMPAIRED PROTEIN-RELATEDcoord: 12..131

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh07G003580CmaCh07G003580gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G003580.1:exon:2234CmaCh07G003580.1:exon:2234exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G003580.1:cdsCmaCh07G003580.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh07G003580.1CmaCh07G003580.1-proteinpolypeptide