CmaCh06G001640.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCTTCAGTTTTTCTTTGGACCTGAATTTTCTTCTTCCCCTTCCCTTCTTCTTCCTCTTCTTCTGTCTCAAAACCCTAATTACACCTTTTTCCTTCTATAATTCCCTCCTCTACAGTGCTAGAGATCAGGTATTTACTTTGCTTTTTTCATCTCTATCTCTACGCTTTTCCTTTGCAATTATCTTAATTACTCTTGTGTTCTTCCTTTTTTTATTTTTTGTTTCCCTTCCCTTCAATCCACCTCTTTCAATTGCTGACACCATTTTGATGTTCTTGAATTCTCTCTATGTCGTTGTGTTTCTTGCGGAATTCGACCCCTTTTGTATTGGCTGCGTTTCTTGTTTCAATTTTTGTTTTATTTTCTGCATGTTTGTGTATTTTCGTTGTGTTCAGATTGCTTTATCTTAATTCTGATTGGGAATTGGATGTTCATATCGTTTTCTGATTCCGGAAAGGTGTGTACTGTGTCCATGGATGAAATGCAGTTCGTATTCATGCGCTGACTATGCCCTTAAAACCTTGGAAGATTGGCAATCCATTATTTGAGATCTTCCTCATCTAGCAGATATTGGCAGCTTCCAATTTAAATTTGTACTCTTGATTACTGAAGAAATGTTTGATTGGGATGTTATTTTATGGCTTCCGAGTTTTCTAATTGATGTATGAGTCTGATGGAATGTGCAGAGTGGAATTTGTGGTAGAATTAGAAGCTAATTTACTGTTCTCATAATTATTTTCAGCGAAAGAAATGTCAACTCAGTTTCTTGCCCTCGTGGAGAAACATTAGCGATTTATGTTTAAAGCTAGAATTTGGAAGGGGAAGAATGGAGGCTAACATCTGTGACGTCAATCACCTCGATTCCGATGTCCTTTTACCTCCAAGAAAGCGTCTTCTTGCTGGATTGAGAAAGAAAGGGGTCGATGGTGATGGTACTTTTAATGTGCCTCCAGTTGCCTCCACCTCTTGTTCTCCCCCTCCCTCTCCTTCCTATGGCTTCACATCTATTGAATTCAATATACGGCTCAACAATCTGTTGAGTGCTCATTCAAATACTAACCTATCGCCCGAGGAGATAGTGGAGGCCTCAAGATCAGCGGCAGCTGCAGCTGTGAAGGCTGCAGAGGCTGCCAGGACAGCAGCTGAAGAGAAGGCTGCGATTGCAGCAAAGGCTGTTGCAGCTGCAAAGAGTGCCATGGACTTGGTTGCCTCGATTTCTGAAGAAGCAGCCTATAAAGAAATAAAACAGAGAAAGAACAAGCTGAAGAAACATGTCCCAGTTCAGTTTCTGTATACAAAATATCAACCTCTCGAGAATACCAGGACAGATGAAGAGATGGCCCGCAAATTACATCGGGCAATTAATAGCTCCCCAAGAATTTTGAAGAATTCATCTGGTTCTGATGCTAGAGGCCACAAACATAAGAAGTTGAAAACTTCGCCTGGTTCTGAGAAAATTATGGTTTCCAATTGTGGCATCTCACAGGAGTCGGAACCTACTCCTACATGCAACGGGCATGCTAAAACTAACGAGGCTGACTCTGAATGTAGCTTTCAGGAAGCATACAAGCTCAAATCTGATGAGAAGACTATTAAATATGAGAAGAACAATCAGTCTCAGATGGATACTGGAGAATCTGAGACAAGTCAGAAGGAGAAAAAAACGTGCGATGATATTAGTGTCACTGGTAAGAAGAAGGGAAGAGTGAAGCTTAAAAAATTGTCGTTGAGTATTTGTTCTTTCAGGGATCAAAAAGCTCTCAAGGAAGACATGGACAATGGAAGTTCTCCAATATTGGCTGTGCAAAACACGGGGTCTCCCACACCCGAAAATGTCATTTTGCATTCTGTAGATAGCCCTAGCCCTACCCAAGGCGTGCTGCCAATAGATTCTACATCTTTATGGAAATGTCAGGAGTTCAAAGCTCCCCTTTCTGTCGAACAGAATAAAGTTATGCAGTCATGACCGGGAATGACATATGGTAAAAGGTTCCTGGCAATAGAAGTCGCGGTCGAGGTAGGATCCATGCAGCTTTTCTTATAGATACGGCGTTAGTCCATCTGTCTTCCTTTTGGTCCTGCCATCTTTTGTTTCACAATGAACTGGGATAGACCAATTGTAAATTTCATATTATGTGTTTGATTATTCTGCAGAGTTCAAAGGTATCCTTTACGATACACAGAGCTTGAAGTCCAAATAAGAGGGTTACAATAAACTGAATACTTGAACACTCCTTGTTTTACAGGAGGCATTTTTGTCTTGGTTTCTTTATATATGCTAAATATACTAAAAAGTAATCCCTATTGTATCTGTAGGTAAGATCTGTAGATGGTTGTTTTCATGGTCCTGCTACAGTTGTATCTATATATTACTTAACGAAGTCCTCCTCGTTTTTAGGAGTTGTAGATTGAAAGAAATTGAAGAAAACTTCAAATAATTGTGTTCTACTTCTGGAAAGAGTAAACCGTTTGCCTTTTGTTGGTCATCTAGTCTGATTATTGATTATCTGAGATTGAGATTGTATTTTCTAGTTCTTTTTTTCCCTTTAAGAAGAGGATGTTCTTTCCTCTTGTAGCTTTGTAATTGCTCTTAATATATTAATGAAAGCTTCCCATTTCGTTAATTGTTGTTCTTCTTTTAGTTGCAGCAGCTCTTCTCTGTTCTTATGTTG ATGATCTTCAGTTTTTCTTTGGACCTGAATTTTCTTCTTCCCCTTCCCTTCTTCTTCCTCTTCTTCTGTCTCAAAACCCTAATTACACCTTTTTCCTTCTATAATTCCCTCCTCTACAGTGCTAGAGATCAGCGAAAGAAATGTCAACTCAGTTTCTTGCCCTCGTGGAGAAACATTAGCGATTTATGTTTAAAGCTAGAATTTGGAAGGGGAAGAATGGAGGCTAACATCTGTGACGTCAATCACCTCGATTCCGATGTCCTTTTACCTCCAAGAAAGCGTCTTCTTGCTGGATTGAGAAAGAAAGGGGTCGATGGTGATGGTACTTTTAATGTGCCTCCAGTTGCCTCCACCTCTTGTTCTCCCCCTCCCTCTCCTTCCTATGGCTTCACATCTATTGAATTCAATATACGGCTCAACAATCTGTTGAGTGCTCATTCAAATACTAACCTATCGCCCGAGGAGATAGTGGAGGCCTCAAGATCAGCGGCAGCTGCAGCTGTGAAGGCTGCAGAGGCTGCCAGGACAGCAGCTGAAGAGAAGGCTGCGATTGCAGCAAAGGCTGTTGCAGCTGCAAAGAGTGCCATGGACTTGGTTGCCTCGATTTCTGAAGAAGCAGCCTATAAAGAAATAAAACAGAGAAAGAACAAGCTGAAGAAACATGTCCCAGTTCAGTTTCTGTATACAAAATATCAACCTCTCGAGAATACCAGGACAGATGAAGAGATGGCCCGCAAATTACATCGGGCAATTAATAGCTCCCCAAGAATTTTGAAGAATTCATCTGGTTCTGATGCTAGAGGCCACAAACATAAGAAGTTGAAAACTTCGCCTGGTTCTGAGAAAATTATGGTTTCCAATTGTGGCATCTCACAGGAGTCGGAACCTACTCCTACATGCAACGGGCATGCTAAAACTAACGAGGCTGACTCTGAATGTAGCTTTCAGGAAGCATACAAGCTCAAATCTGATGAGAAGACTATTAAATATGAGAAGAACAATCAGTCTCAGATGGATACTGGAGAATCTGAGACAAGTCAGAAGGAGAAAAAAACGTGCGATGATATTAGTGTCACTGGTAAGAAGAAGGGAAGAGTGAAGCTTAAAAAATTGTCGTTGAGTATTTGTTCTTTCAGGGATCAAAAAGCTCTCAAGGAAGACATGGACAATGGAAGTTCTCCAATATTGGCTGTGCAAAACACGGGGTCTCCCACACCCGAAAATGTCATTTTGCATTCTGTAGATAGCCCTAGCCCTACCCAAGGCGTGCTGCCAATAGATTCTACATCTTTATGGAAATGTCAGGAGTTCAAAGCTCCCCTTTCTGTCGAACAGAATAAAGTTATGCAGTCATGACCGGGAATGACATATGGTAAAAGGTTCCTGGCAATAGAAGTCGCGGTCGAGAGTTCAAAGGTATCCTTTACGATACACAGAGCTTGAAGTCCAAATAAGAGGGTTACAATAAACTGAATACTTGAACACTCCTTGTTTTACAGGAGGCATTTTTGTCTTGGTTTCTTTATATATGCTAAATATACTAAAAAGTAATCCCTATTGTATCTGTAGGTAAGATCTGTAGATGGTTGTTTTCATGGTCCTGCTACAGTTGTATCTATATATTACTTAACGAAGTCCTCCTCGTTTTTAGGAGTTGTAGATTGAAAGAAATTGAAGAAAACTTCAAATAATTGTGTTCTACTTCTGGAAAGAGTAAACCGTTTGCCTTTTGTTGGTCATCTAGTCTGATTATTGATTATCTGAGATTGAGATTGTATTTTCTAGTTCTTTTTTTCCCTTTAAGAAGAGGATGTTCTTTCCTCTTGTAGCTTTGTAATTGCTCTTAATATATTAATGAAAGCTTCCCATTTCGTTAATTGTTGTTCTTCTTTTAGTTGCAGCAGCTCTTCTCTGTTCTTATGTTG ATGATCTTCAGTTTTTCTTTGGACCTGAATTTTCTTCTTCCCCTTCCCTTCTTCTTCCTCTTCTTCTGTCTCAAAACCCTAATTACACCTTTTTCCTTCTATAATTCCCTCCTCTACAGTGCTAGAGATCAGCGAAAGAAATGTCAACTCAGTTTCTTGCCCTCGTGGAGAAACATTAGCGATTTATGTTTAAAGCTAGAATTTGGAAGGGGAAGAATGGAGGCTAACATCTGTGACGTCAATCACCTCGATTCCGATGTCCTTTTACCTCCAAGAAAGCGTCTTCTTGCTGGATTGAGAAAGAAAGGGGTCGATGGTGATGGTACTTTTAATGTGCCTCCAGTTGCCTCCACCTCTTGTTCTCCCCCTCCCTCTCCTTCCTATGGCTTCACATCTATTGAATTCAATATACGGCTCAACAATCTGTTGAGTGCTCATTCAAATACTAACCTATCGCCCGAGGAGATAGTGGAGGCCTCAAGATCAGCGGCAGCTGCAGCTGTGAAGGCTGCAGAGGCTGCCAGGACAGCAGCTGAAGAGAAGGCTGCGATTGCAGCAAAGGCTGTTGCAGCTGCAAAGAGTGCCATGGACTTGGTTGCCTCGATTTCTGAAGAAGCAGCCTATAAAGAAATAAAACAGAGAAAGAACAAGCTGAAGAAACATGTCCCAGTTCAGTTTCTGTATACAAAATATCAACCTCTCGAGAATACCAGGACAGATGAAGAGATGGCCCGCAAATTACATCGGGCAATTAATAGCTCCCCAAGAATTTTGAAGAATTCATCTGGTTCTGATGCTAGAGGCCACAAACATAAGAAGTTGAAAACTTCGCCTGGTTCTGAGAAAATTATGGTTTCCAATTGTGGCATCTCACAGGAGTCGGAACCTACTCCTACATGCAACGGGCATGCTAAAACTAACGAGGCTGACTCTGAATGTAGCTTTCAGGAAGCATACAAGCTCAAATCTGATGAGAAGACTATTAAATATGAGAAGAACAATCAGTCTCAGATGGATACTGGAGAATCTGAGACAAGTCAGAAGGAGAAAAAAACGTGCGATGATATTAGTGTCACTGGTAAGAAGAAGGGAAGAGTGAAGCTTAAAAAATTGTCGTTGAGTATTTGTTCTTTCAGGGATCAAAAAGCTCTCAAGGAAGACATGGACAATGGAAGTTCTCCAATATTGGCTGTGCAAAACACGGGGTCTCCCACACCCGAAAATGTCATTTTGCATTCTGTAGATAGCCCTAGCCCTACCCAAGGCGTGCTGCCAATAGATTCTACATCTTTATGGAAATGTCAGGAGTTCAAAGCTCCCCTTTCTGTCGAACAGAATAAAGTTATGCAGTCATGA MIFSFSLDLNFLLPLPFFFLFFCLKTLITPFSFYNSLLYSARDQRKKCQLSFLPSWRNISDLCLKLEFGRGRMEANICDVNHLDSDVLLPPRKRLLAGLRKKGVDGDGTFNVPPVASTSCSPPPSPSYGFTSIEFNIRLNNLLSAHSNTNLSPEEIVEASRSAAAAAVKAAEAARTAAEEKAAIAAKAVAAAKSAMDLVASISEEAAYKEIKQRKNKLKKHVPVQFLYTKYQPLENTRTDEEMARKLHRAINSSPRILKNSSGSDARGHKHKKLKTSPGSEKIMVSNCGISQESEPTPTCNGHAKTNEADSECSFQEAYKLKSDEKTIKYEKNNQSQMDTGESETSQKEKKTCDDISVTGKKKGRVKLKKLSLSICSFRDQKALKEDMDNGSSPILAVQNTGSPTPENVILHSVDSPSPTQGVLPIDSTSLWKCQEFKAPLSVEQNKVMQS Homology
BLAST of CmaCh06G001640.1 vs. ExPASy TrEMBL
Match: A0A6J1I8C3 (uncharacterized protein LOC111470113 OS=Cucurbita maxima OX=3661 GN=LOC111470113 PE=4 SV=1) HSP 1 Score: 851.7 bits (2199), Expect = 1.4e-243 Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. ExPASy TrEMBL
Match: A0A6J1G7K8 (uncharacterized protein LOC111451593 OS=Cucurbita moschata OX=3662 GN=LOC111451593 PE=4 SV=1) HSP 1 Score: 703.7 bits (1815), Expect = 4.8e-199 Identity = 374/379 (98.68%), Postives = 376/379 (99.21%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. ExPASy TrEMBL
Match: A0A5D3CHI9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00150 PE=4 SV=1) HSP 1 Score: 592.4 bits (1526), Expect = 1.6e-165 Identity = 323/379 (85.22%), Postives = 345/379 (91.03%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. ExPASy TrEMBL
Match: A0A1S3BJP5 (uncharacterized protein LOC103490642 OS=Cucumis melo OX=3656 GN=LOC103490642 PE=4 SV=1) HSP 1 Score: 592.4 bits (1526), Expect = 1.6e-165 Identity = 323/379 (85.22%), Postives = 345/379 (91.03%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. ExPASy TrEMBL
Match: A0A0A0L0X5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000190 PE=4 SV=1) HSP 1 Score: 586.3 bits (1510), Expect = 1.1e-163 Identity = 320/379 (84.43%), Postives = 342/379 (90.24%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. NCBI nr
Match: XP_022971364.1 (uncharacterized protein LOC111470113 [Cucurbita maxima]) HSP 1 Score: 851.7 bits (2199), Expect = 3.0e-243 Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. NCBI nr
Match: KAG6596283.1 (hypothetical protein SDJN03_09463, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 752.3 bits (1941), Expect = 2.4e-213 Identity = 397/405 (98.02%), Postives = 400/405 (98.77%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. NCBI nr
Match: XP_022947836.1 (uncharacterized protein LOC111451593 [Cucurbita moschata]) HSP 1 Score: 703.7 bits (1815), Expect = 9.9e-199 Identity = 374/379 (98.68%), Postives = 376/379 (99.21%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. NCBI nr
Match: XP_023540700.1 (uncharacterized protein LOC111800985 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 699.9 bits (1805), Expect = 1.4e-197 Identity = 373/379 (98.42%), Postives = 375/379 (98.94%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. NCBI nr
Match: KAG7027833.1 (hypothetical protein SDJN02_09010, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 697.6 bits (1799), Expect = 7.1e-197 Identity = 373/379 (98.42%), Postives = 374/379 (98.68%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. TAIR 10
Match: AT4G35510.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17540.3); Has 182 Blast hits to 179 proteins in 73 species: Archae - 0; Bacteria - 87; Metazoa - 17; Fungi - 9; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). ) HSP 1 Score: 176.0 bits (445), Expect = 6.7e-44 Identity = 157/388 (40.46%), Postives = 217/388 (55.93%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. TAIR 10
Match: AT2G17540.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35510.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 106.3 bits (264), Expect = 6.5e-23 Identity = 123/380 (32.37%), Postives = 172/380 (45.26%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. TAIR 10
Match: AT2G17540.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35510.1); Has 39 Blast hits to 39 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 106.3 bits (264), Expect = 6.5e-23 Identity = 123/380 (32.37%), Postives = 172/380 (45.26%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. TAIR 10
Match: AT2G17540.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 106.3 bits (264), Expect = 6.5e-23 Identity = 123/380 (32.37%), Postives = 172/380 (45.26%), Query Frame = 0
BLAST of CmaCh06G001640.1 vs. TAIR 10
Match: AT5G66000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17540.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 63.5 bits (153), Expect = 4.9e-10 Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|