CmaCh03G004300.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G004300.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr03: 4558058 .. 4559800 (+)
Sequence length301
RNA-Seq ExpressionCmaCh03G004300.1
SyntenyCmaCh03G004300.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCACGACTGAGCCCTTCTCCCGGCCTCTCTCACGAAAGCGCTCTTCCGTAAAAAATCTCCTGATTTCTACTCTCCAGAGGCGAGCCAAATTGATTTCGGACTTCAGAGCTTCGCTTCACGTTAATCTCATCAGAATCCGGTGCATAACGGAGTGTCTCATTTTCTGGATCAGTCGTGTTTCAGACTTTAGAGGTTTGCTTCATCTTCTAATGAGCTTCTTTTTTTCTGATCAGAATCTGATAGCTTGTTCTTACTCACACACACACATATATATAGTAGTTTGGATGAATAGGAGAGAAGAGGATTGGAAGATCTGGAATAATGAACTCATTGAATGTTATTGACTTCATGGTGGTTTCAATGTGTTCATTATTCCAGAGATTGCTTATTTGATTGTATTGCTTACTAACCTTTAAGAATGTTTCCTTAGCTTCAAAACCATTAGCTATATTGTATTTAGAGACCCTATTTTTTCCTTTAGAGTTTTCATCTCAGTATGTATTTCTTGAGATGACTAATGAGATTCATTTAATTGCAAACATCATAAAGTTTGAAAATATAATTCCACCTGAAATTGCATCTCTTGCAAATAAATTAAGTTAACAATGATCAGTGTAAAACAAGAAACCATTCAAGGATGCCTCTAACCTCGGGAGAAAATCTGGAGGTCTTTCGATTTTGTTTTTTCAAGATCTCTTGTTAGCTCAAGTCTACTGCTAGCAGATATTGTCTTCTTTGAGCTTTCCCTTTCAGACTTCCTCTCAAGATTTTTTAAAACGCATCTGCTAGGAAGAGGTTTCCACACCCGTATAAAGAGTGTTTCATCCCCTCTCTAACCAATGTGGGATCTCACATACGCGTTTTAAAAATCTATAATCTCTTCTTAACAGACGCATTTTAAAAACGTTGAGGGGAAGCAAGCTTGGAAGGAAAAAACTTAAGGACGATATCTACCAGTAGTGAGTTTGACCCGTTATAACAAATCTTTTTGGTGGTGTTAGAAAGAAGGTTTTACTCTGTGGATGATGGTTATGGATTGGATATGATGGTTGGAAATTAACCCTTACATTTGAAGATTGATCCATGAGTGGGATGAGAAATTGAGGAACTTATGATGTTTTTGGGTTCTGAATTAGTTTCTGGTTCCTATGCCAATTCTTTTGTAATTACTCATCTTTAGATTCATTTTCAAGTGTCTGCGGCAACTTTTATGAGGAGAGTATCCTATCCTATCCTTCCTCCTTTTTGCTTACTGCTTTGTTAATGAATAGAATGCTTCTTATACATTTCTGGTTCTAGTCTGGCAGTGTTCCTGTAACGGCCCAAGTCCACCTCTAGCTAATATTGTCCTATTTGAGCTTTCCCTTTCGGACTTCTCTTCTAGGTTTTTAAAACGCGTCTCCTAAGGAAAGGTTTCCACACCCTTATAAACGATATTTCGTTCTCCTCCCCAACCAATGTGGGATACTCACCGTTCCTGTTTTTTTTACTTCTGGGACTCAATTGCAATACTACTATGTTTCATTGTCCCTAACTTCACTCGTCTATTTGTTTTGATCTACAGACTTGATTCTTGCTAGTGCCATTGAAGGCATGGAATGATTCTATCAAAGATGGAGTTCTCTCGGTCGGCTCACCGATACCAAGTAAATTACATCTTCCTTTCAGCTGCTGATTTAGTTCATTGACACCCTTTTTCCTGAAGAGTTCTATCAGCTGGTTTAGGTCTGCTTGTGGAA

mRNA sequence

ATGCGCACGACTGAGCCCTTCTCCCGGCCTCTCTCACGAAAGCGCTCTTCCGTAAAAAATCTCCTGATTTCTACTCTCCAGAGGCGAGCCAAATTGATTTCGGACTTCAGAGCTTCGCTTCACGTTAATCTCATCAGAATCCGGTGCATAACGGAGTGTCTCATTTTCTGGATCAGTCGTGTTTCAGACTTTAGAGACTTGATTCTTGCTAGTGCCATTGAAGGCATGGAATGATTCTATCAAAGATGGAGTTCTCTCGGTCGGCTCACCGATACCAACTGGTTTAGGTCTGCTTGTGGAA

Coding sequence (CDS)

ATGCGCACGACTGAGCCCTTCTCCCGGCCTCTCTCACGAAAGCGCTCTTCCGTAAAAAATCTCCTGATTTCTACTCTCCAGAGGCGAGCCAAATTGATTTCGGACTTCAGAGCTTCGCTTCACGTTAATCTCATCAGAATCCGGTGCATAACGGAGTGTCTCATTTTCTGGATCAGTCGTGTTTCAGACTTTAGAGACTTGATTCTTGCTAGTGCCATTGAAGGCATGGAATGA

Protein sequence

MRTTEPFSRPLSRKRSSVKNLLISTLQRRAKLISDFRASLHVNLIRIRCITECLIFWISRVSDFRDLILASAIEGME
Homology
[Close]
BLAST of CmaCh03G004300.1 vs. ExPASy TrEMBL
Match: A0A6J1GDD0 (uncharacterized protein LOC111453166 OS=Cucurbita moschata OX=3662 GN=LOC111453166 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.3e-24
Identity = 62/66 (93.94%), Postives = 62/66 (93.94%), Query Frame = 0 

Query: 1  MRTTEPFSRPLSRKRSSVKNLLISTLQRRAKLISDFRASLHVNLIRIRCITECLIFWISR 60
          MR  EPFSRPLSRKRS VKNLLISTLQRRAKLISDFRASLHVNLIRIRCITECLIFWI R
Sbjct: 1  MRAIEPFSRPLSRKRSPVKNLLISTLQRRAKLISDFRASLHVNLIRIRCITECLIFWIRR 60

Query: 61 VSDFRD 67
          VSDFRD
Sbjct: 61 VSDFRD 66

[Close]
BLAST of CmaCh03G004300.1 vs. NCBI nr
Match: XP_022949911.1 (uncharacterized protein LOC111453166 [Cucurbita moschata])

HSP 1 Score: 120.9 bits (302), Expect = 4.7e-24
Identity = 62/66 (93.94%), Postives = 62/66 (93.94%), Query Frame = 0 

Query: 1  MRTTEPFSRPLSRKRSSVKNLLISTLQRRAKLISDFRASLHVNLIRIRCITECLIFWISR 60
          MR  EPFSRPLSRKRS VKNLLISTLQRRAKLISDFRASLHVNLIRIRCITECLIFWI R
Sbjct: 1  MRAIEPFSRPLSRKRSPVKNLLISTLQRRAKLISDFRASLHVNLIRIRCITECLIFWIRR 60

Query: 61 VSDFRD 67
          VSDFRD
Sbjct: 61 VSDFRD 66

[Close]
BLAST of CmaCh03G004300.1 vs. NCBI nr
Match: KAG6603660.1 (hypothetical protein SDJN03_04269, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-23
Identity = 61/66 (92.42%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 1  MRTTEPFSRPLSRKRSSVKNLLISTLQRRAKLISDFRASLHVNLIRIRCITECLIFWISR 60
          MR TEPFSRPLSRKRS VKNLLISTLQRRAKLISDFR SLHVNLIRIRCITECLIFWI R
Sbjct: 1  MRATEPFSRPLSRKRSPVKNLLISTLQRRAKLISDFRVSLHVNLIRIRCITECLIFWICR 60

Query: 61 VSDFRD 67
           SDFRD
Sbjct: 61 FSDFRD 66

The following BLAST results are available for this feature:
BLAST of CmaCh03G004300.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G004300.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GDD02.3e-2493.94uncharacterized protein LOC111453166 OS=Cucurbita moschata OX=3662 GN=LOC1114531... [more]
BLAST of CmaCh03G004300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949911.14.7e-2493.94uncharacterized protein LOC111453166 [Cucurbita moschata][more]
KAG6603660.11.0e-2392.42hypothetical protein SDJN03_04269, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh03G004300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh03G004300CmaCh03G004300gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh03G004300.1:exon:1378CmaCh03G004300.1:exon:1378exon
CmaCh03G004300.1:exon:1379CmaCh03G004300.1:exon:1379exon
CmaCh03G004300.1:exon:1380CmaCh03G004300.1:exon:1380exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh03G004300.1:cdsCmaCh03G004300.1:cdsCDS
CmaCh03G004300.1:cdsCmaCh03G004300.1:cds_2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh03G004300.1:three_prime_utrCmaCh03G004300.1:three_prime_utrthree_prime_UTR
CmaCh03G004300.1:three_prime_utrCmaCh03G004300.1:three_prime_utr_2three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh03G004300.1CmaCh03G004300.1-proteinpolypeptide