CmaCh03G000670.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G000670.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein Ycf2
Location	Cma_Chr03: 630995 .. 631753 (-)
Sequence length	651
RNA-Seq Expression	CmaCh03G000670.1
Synteny	CmaCh03G000670.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGTTTGTTGCTATCTGTTACAATAACGAATCATTGGTTTAACTGAATAAACGAATCATTGGTTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCAAGCGGATCATTTCTGATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATCTTCCAACGAACAAGACTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGCACTTCGAATTGTTGATTCATCACTAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGTTTGTTGCTATCTGTTACAACCACTCAAAAGGGTTTAGAGTTTCTTAG

mRNA sequence

ATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCAAGCGGATCATTTCTGATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATCTTCCAACGAACAAGACTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGCACTTCGAATTATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGTTTGTTGCTATCTGTTACAACCACTCAAAAGGGTTTAGAGTTTCTTAG

Coding sequence (CDS)

ATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCAAGCGGATCATTTCTGATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATCTTCCAACGAACAAGACTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGCACTTCGAATTATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGTTTGTTGCTATCTGTTACAACCACTCAAAAGGGTTTAGAGTTTCTTAG

Protein sequence

MTKTLLRKRWLFPDEIIWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFELWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMFVAICYNHSKGFRVS

Homology

[Close]

BLAST of CmaCh03G000670.1 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.4e-100
Identity = 180/204 (88.24%), Postives = 184/204 (90.20%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIE PNELGFPYWARSFRGKRII DE     ENDSEFLQSGT+QYQTRDR
Sbjct: 2085 IWRPWGFLFDCIESPNELGFPYWARSFRGKRIIYDEEDGLQENDSEFLQSGTMQYQTRDR 2144

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLP  I
Sbjct: 2145 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSI 2204

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2205 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2264

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM +AICYN+
Sbjct: 2265 MTKTLLRKRWLFPDEMVLAICYNN 2288

[Close]

BLAST of CmaCh03G000670.1 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.9e-98
Identity = 177/196 (90.31%), Postives = 178/196 (90.82%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEE-----NDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRII DE+     NDSEFLQSGTVQYQTRDR
Sbjct: 2098 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEKDELQANDSEFLQSGTVQYQTRDR 2157

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2158 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2217

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ
Sbjct: 2218 YKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 2277

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLLRKRWLFPDEM
Sbjct: 2278 MTKTLLRKRWLFPDEM 2293

[Close]

BLAST of CmaCh03G000670.1 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 5.4e-97
Identity = 175/196 (89.29%), Postives = 176/196 (89.80%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIERPN LGFPYWARSFRGKRII DE     ENDSEFLQSGT+QYQTRDR
Sbjct: 2080 IWRPWGFLFDCIERPNSLGFPYWARSFRGKRIIYDEKEELQENDSEFLQSGTMQYQTRDR 2139

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2140 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDSPTSI 2199

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNG LLDQ
Sbjct: 2200 YKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGRLLDQ 2259

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLLRKRWLFPDEM
Sbjct: 2260 MTKTLLRKRWLFPDEM 2275

[Close]

BLAST of CmaCh03G000670.1 vs. ExPASy Swiss-Prot
Match: Q9B1K6 (Protein Ycf2 OS=Lotus japonicus OX=34305 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.1e-96
Identity = 173/204 (84.80%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IW PWGFLFDCIERPNELGFPYWARSFRGKRII DE     ENDSEFLQ GT+QYQT+DR
Sbjct: 2091 IWCPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQGGTMQYQTQDR 2150

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDP DPLFFLFKDQPFVSVFSHREFFADEE+S+GLLT QTDLP  I
Sbjct: 2151 SSKEQGFFRISQFIWDPTDPLFFLFKDQPFVSVFSHREFFADEEISRGLLTFQTDLPTSI 2210

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTN+SLSNGFFRSNT SESYQYLSN+FLSNGTLLDQ
Sbjct: 2211 YKRWFIKNTQEKHFELLIHRQRWLRTNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLDQ 2270

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM VAIC N+
Sbjct: 2271 MTKTLLRKRWLFPDEMVVAICSNN 2294

[Close]

BLAST of CmaCh03G000670.1 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 6.7e-95
Identity = 173/196 (88.27%), Postives = 174/196 (88.78%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIER NELGFPYWARSFRGKRII DE     ENDSEFLQSGT+QYQTRDR
Sbjct: 2100 IWRPWGFLFDCIERTNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSGTMQYQTRDR 2159

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2160 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2219

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNG FRSNTPSESYQYLSNLFLSN  LLDQ
Sbjct: 2220 YKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGSFRSNTPSESYQYLSNLFLSNARLLDQ 2279

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLLRKRWLFPDEM
Sbjct: 2280 MTKTLLRKRWLFPDEM 2295

[Close]

BLAST of CmaCh03G000670.1 vs. ExPASy TrEMBL
Match: A0A2H4T233 (Protein Ycf2 OS=Cucurbita maxima OX=3661 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.7e-107
Identity = 191/199 (95.98%), Postives = 192/199 (96.48%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ
Sbjct: 2096 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 2155

Query: 77   DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 136
            DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF
Sbjct: 2156 DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 2215

Query: 137  IKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL 196
            IKNMQEKHF L      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL
Sbjct: 2216 IKNMQEKHFGLLIHHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL 2275

Query: 197  LRKRWLFPDEMFVAICYNH 210
            LRKRWLFPDEMFVAICYN+
Sbjct: 2276 LRKRWLFPDEMFVAICYNN 2294

[Close]

BLAST of CmaCh03G000670.1 vs. ExPASy TrEMBL
Match: A0A2H4T2B6 (Protein Ycf2 OS=Cucurbita moschata OX=3662 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.7e-107
Identity = 191/199 (95.98%), Postives = 192/199 (96.48%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ
Sbjct: 2108 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 2167

Query: 77   DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 136
            DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF
Sbjct: 2168 DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 2227

Query: 137  IKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL 196
            IKNMQEKHF L      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL
Sbjct: 2228 IKNMQEKHFGLLIHHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL 2287

Query: 197  LRKRWLFPDEMFVAICYNH 210
            LRKRWLFPDEMFVAICYN+
Sbjct: 2288 LRKRWLFPDEMFVAICYNN 2306

[Close]

BLAST of CmaCh03G000670.1 vs. ExPASy TrEMBL
Match: A0A344AXU5 (Protein Ycf2 OS=Cucurbita pepo OX=3663 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.1e-106
Identity = 189/201 (94.03%), Postives = 191/201 (95.02%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ
Sbjct: 2114 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 2173

Query: 77   DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 136
            DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF
Sbjct: 2174 DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 2233

Query: 137  IKNMQEK--------HFELWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 196
            IKNMQEK        H + WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK
Sbjct: 2234 IKNMQEKQKHFGLLIHHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 2293

Query: 197  TLLRKRWLFPDEMFVAICYNH 210
            TLLRKRWLFPDEMFVAICYN+
Sbjct: 2294 TLLRKRWLFPDEMFVAICYNN 2314

[Close]

BLAST of CmaCh03G000670.1 vs. ExPASy TrEMBL
Match: E5KUD9 (Protein Ycf2 OS=Corynocarpus laevigatus OX=4312 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.6e-99
Identity = 182/201 (90.55%), Postives = 184/201 (91.54%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE--ENDSEFLQSGTVQYQTRDRSSN 76
            IWRPWGFLFDCIERPN LGFPYWARSFRGKRII DE  ENDSEFLQSGTVQYQTRDRSS 
Sbjct: 2112 IWRPWGFLFDCIERPNSLGFPYWARSFRGKRIIYDELQENDSEFLQSGTVQYQTRDRSSK 2171

Query: 77   EQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKR 136
            EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD+P  IYKR
Sbjct: 2172 EQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDIPTSIYKR 2231

Query: 137  WFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 196
            WFIKN QEKHF L      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK
Sbjct: 2232 WFIKNTQEKHFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 2291

Query: 197  TLLRKRWLFPDEMFVAICYNH 210
            TLLRKRWLFPDEM VAICYN+
Sbjct: 2292 TLLRKRWLFPDEMVVAICYNN 2312

[Close]

BLAST of CmaCh03G000670.1 vs. ExPASy TrEMBL
Match: A0A1L5YDF8 (Protein Ycf2 OS=Ulmus davidiana OX=1297873 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.0e-98
Identity = 181/204 (88.73%), Postives = 185/204 (90.69%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRII DE     ENDSEFLQSGT+QYQTRDR
Sbjct: 2076 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEENGLQENDSEFLQSGTMQYQTRDR 2135

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEM+KGLLTSQTDLP  I
Sbjct: 2136 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMAKGLLTSQTDLPTSI 2195

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEK+FEL      WLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ
Sbjct: 2196 YKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTPSESYQYLSKLFLSNGTLLDQ 2255

Query: 197  MTKTLLRKRWLFPDEMFVAICYNH 210
            MTKTLLRKRWLFPDEM VAICYN+
Sbjct: 2256 MTKTLLRKRWLFPDEMVVAICYNN 2279

[Close]

BLAST of CmaCh03G000670.1 vs. NCBI nr
Match: YP_009447494.1 (Ycf2 [Cucurbita maxima] >YP_009447512.1 Ycf2 [Cucurbita maxima] >ATY69943.1 Ycf2 [Cucurbita maxima] >ATY69945.1 Ycf2 [Cucurbita maxima])

HSP 1 Score: 397.9 bits (1021), Expect = 5.6e-107
Identity = 191/199 (95.98%), Postives = 192/199 (96.48%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ
Sbjct: 2096 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 2155

Query: 77   DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 136
            DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF
Sbjct: 2156 DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 2215

Query: 137  IKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL 196
            IKNMQEKHF L      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL
Sbjct: 2216 IKNMQEKHFGLLIHHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL 2275

Query: 197  LRKRWLFPDEMFVAICYNH 210
            LRKRWLFPDEMFVAICYN+
Sbjct: 2276 LRKRWLFPDEMFVAICYNN 2294

[Close]

BLAST of CmaCh03G000670.1 vs. NCBI nr
Match: QWV60883.1 (hypothetical protein RF2 [Cucurbita ficifolia] >QWV60904.1 hypothetical protein RF2 [Cucurbita ficifolia] >QZL38824.1 Ycf2 [Cucurbita ficifolia] >QZL38831.1 Ycf2 [Cucurbita ficifolia])

HSP 1 Score: 397.9 bits (1021), Expect = 5.6e-107
Identity = 191/199 (95.98%), Postives = 192/199 (96.48%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ
Sbjct: 2096 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 2155

Query: 77   DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 136
            DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF
Sbjct: 2156 DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 2215

Query: 137  IKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL 196
            IKNMQEKHF L      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL
Sbjct: 2216 IKNMQEKHFGLLIHHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL 2275

Query: 197  LRKRWLFPDEMFVAICYNH 210
            LRKRWLFPDEMFVAICYN+
Sbjct: 2276 LRKRWLFPDEMFVAICYNN 2294

[Close]

BLAST of CmaCh03G000670.1 vs. NCBI nr
Match: YP_009447579.1 (Ycf2 [Cucurbita moschata] >YP_009447598.1 Ycf2 [Cucurbita moschata] >ATY70023.1 Ycf2 [Cucurbita moschata] >ATY70029.1 Ycf2 [Cucurbita moschata])

HSP 1 Score: 397.9 bits (1021), Expect = 5.6e-107
Identity = 191/199 (95.98%), Postives = 192/199 (96.48%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ
Sbjct: 2108 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 2167

Query: 77   DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 136
            DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF
Sbjct: 2168 DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 2227

Query: 137  IKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL 196
            IKNMQEKHF L      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL
Sbjct: 2228 IKNMQEKHFGLLIHHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTL 2287

Query: 197  LRKRWLFPDEMFVAICYNH 210
            LRKRWLFPDEMFVAICYN+
Sbjct: 2288 LRKRWLFPDEMFVAICYNN 2306

[Close]

BLAST of CmaCh03G000670.1 vs. NCBI nr
Match: YP_009505123.1 (Ycf2 [Cucurbita pepo] >YP_009505141.1 Ycf2 [Cucurbita pepo] >AWX90420.1 Ycf2 [Cucurbita pepo] >AWX90422.1 Ycf2 [Cucurbita pepo])

HSP 1 Score: 393.7 bits (1010), Expect = 1.1e-105
Identity = 189/201 (94.03%), Postives = 191/201 (95.02%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 76
            IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ
Sbjct: 2114 IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDEENDSEFLQSGTVQYQTRDRSSNEQ 2173

Query: 77   DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 136
            DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF
Sbjct: 2174 DFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWF 2233

Query: 137  IKNMQEK--------HFELWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 196
            IKNMQEK        H + WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK
Sbjct: 2234 IKNMQEKQKHFGLLIHHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 2293

Query: 197  TLLRKRWLFPDEMFVAICYNH 210
            TLLRKRWLFPDEMFVAICYN+
Sbjct: 2294 TLLRKRWLFPDEMFVAICYNN 2314

[Close]

BLAST of CmaCh03G000670.1 vs. NCBI nr
Match: YP_004072505.1 (Ycf2 protein [Corynocarpus laevigatus] >YP_004072521.1 Ycf2 protein [Corynocarpus laevigatus] >ADO60353.1 Ycf2 protein [Corynocarpus laevigatus] >ADO60369.1 Ycf2 protein [Corynocarpus laevigatus])

HSP 1 Score: 372.1 bits (954), Expect = 3.3e-99
Identity = 182/201 (90.55%), Postives = 184/201 (91.54%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE--ENDSEFLQSGTVQYQTRDRSSN 76
            IWRPWGFLFDCIERPN LGFPYWARSFRGKRII DE  ENDSEFLQSGTVQYQTRDRSS 
Sbjct: 2112 IWRPWGFLFDCIERPNSLGFPYWARSFRGKRIIYDELQENDSEFLQSGTVQYQTRDRSSK 2171

Query: 77   EQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKR 136
            EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD+P  IYKR
Sbjct: 2172 EQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDIPTSIYKR 2231

Query: 137  WFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 196
            WFIKN QEKHF L      WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK
Sbjct: 2232 WFIKNTQEKHFGLLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTK 2291

Query: 197  TLLRKRWLFPDEMFVAICYNH 210
            TLLRKRWLFPDEM VAICYN+
Sbjct: 2292 TLLRKRWLFPDEMVVAICYNN 2312

[Close]

BLAST of CmaCh03G000670.1 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 333.2 bits (853), Expect = 1.6e-91
Identity = 168/196 (85.71%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRP GFLFDCIERPNELGFPY A SFRGKRII DE     ENDSEFLQSGT+QYQ RDR
Sbjct: 2094 IWRPRGFLFDCIERPNELGFPYSAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDR 2153

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2154 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2213

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNT SESYQYLSNLF+SNGTLLD+
Sbjct: 2214 YKRWFIKNTQEKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDR 2273

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLL+KRWLF DEM
Sbjct: 2274 MTKTLLKKRWLFSDEM 2289

[Close]

BLAST of CmaCh03G000670.1 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 333.2 bits (853), Expect = 1.6e-91
Identity = 168/196 (85.71%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 17   IWRPWGFLFDCIERPNELGFPYWARSFRGKRIISDE-----ENDSEFLQSGTVQYQTRDR 76
            IWRP GFLFDCIERPNELGFPY A SFRGKRII DE     ENDSEFLQSGT+QYQ RDR
Sbjct: 2094 IWRPRGFLFDCIERPNELGFPYSAGSFRGKRIIYDEKYELQENDSEFLQSGTMQYQRRDR 2153

Query: 77   SSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICI 136
            SS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  I
Sbjct: 2154 SSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSI 2213

Query: 137  YKRWFIKNMQEKHFEL------WLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ 196
            YKRWFIKN QEKHFEL      WLRTNSSLSNGFFRSNT SESYQYLSNLF+SNGTLLD+
Sbjct: 2214 YKRWFIKNTQEKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDR 2273

Query: 197  MTKTLLRKRWLFPDEM 202
            MTKTLL+KRWLF DEM
Sbjct: 2274 MTKTLLKKRWLFSDEM 2289

The following BLAST results are available for this feature:

BLAST of CmaCh03G000670.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09WV7	1.4e-100	88.24	Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1	[more]
B1A978	4.9e-98	90.31	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
Q49KT6	5.4e-97	89.29	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
Q9B1K6	2.1e-96	84.80	Protein Ycf2 OS=Lotus japonicus OX=34305 GN=ycf2-A PE=3 SV=1	[more]
Q0ZIV6	6.7e-95	88.27	Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1	[more]

BLAST of CmaCh03G000670.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H4T233	2.7e-107	95.98	Protein Ycf2 OS=Cucurbita maxima OX=3661 GN=ycf2 PE=3 SV=1	[more]
A0A2H4T2B6	2.7e-107	95.98	Protein Ycf2 OS=Cucurbita moschata OX=3662 GN=ycf2 PE=3 SV=1	[more]
A0A344AXU5	5.1e-106	94.03	Protein Ycf2 OS=Cucurbita pepo OX=3663 GN=ycf2 PE=3 SV=1	[more]
E5KUD9	1.6e-99	90.55	Protein Ycf2 OS=Corynocarpus laevigatus OX=4312 GN=ycf2 PE=3 SV=1	[more]
A0A1L5YDF8	1.0e-98	88.73	Protein Ycf2 OS=Ulmus davidiana OX=1297873 GN=ycf2 PE=3 SV=1	[more]

BLAST of CmaCh03G000670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009447494.1	5.6e-107	95.98	Ycf2 [Cucurbita maxima] >YP_009447512.1 Ycf2 [Cucurbita maxima] >ATY69943.1 Ycf2...	[more]
QWV60883.1	5.6e-107	95.98	hypothetical protein RF2 [Cucurbita ficifolia] >QWV60904.1 hypothetical protein ...	[more]
YP_009447579.1	5.6e-107	95.98	Ycf2 [Cucurbita moschata] >YP_009447598.1 Ycf2 [Cucurbita moschata] >ATY70023.1 ...	[more]
YP_009505123.1	1.1e-105	94.03	Ycf2 [Cucurbita pepo] >YP_009505141.1 Ycf2 [Cucurbita pepo] >AWX90420.1 Ycf2 [Cu...	[more]
YP_004072505.1	3.3e-99	90.55	Ycf2 protein [Corynocarpus laevigatus] >YP_004072521.1 Ycf2 protein [Corynocarpu...	[more]

BLAST of CmaCh03G000670.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.6e-91	85.71	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.6e-91	85.71	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PANTHER	PTHR33078:SF22	PROTEIN YCF2	coord: 17..208
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 17..208

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G000670	CmaCh03G000670	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G000670.1:exon:1062	CmaCh03G000670.1:exon:1062	exon
CmaCh03G000670.1:exon:1061	CmaCh03G000670.1:exon:1061	exon
CmaCh03G000670.1:exon:1060	CmaCh03G000670.1:exon:1060	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G000670.1:cds	CmaCh03G000670.1:cds_3	CDS
CmaCh03G000670.1:cds	CmaCh03G000670.1:cds_2	CDS
CmaCh03G000670.1:cds	CmaCh03G000670.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G000670.1	CmaCh03G000670.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity