CmaCh02G013440.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G013440.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	cytochrome-c oxidases;electron carriers
Location	Cma_Chr02: 7859449 .. 7861539 (+)
Sequence length	676
RNA-Seq Expression	CmaCh02G013440.1
Synteny	CmaCh02G013440.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCCCGCCAAGTCGTCGTCTATCATTCGCCTCCACCAGTGGCAGTTTCCGGAACAACGATTTCTCGTCTTCCCTGAATCCTCCCCCAAATTCAAGTGAGTTTCAATCCATTCACCTATTTCTTTAGGATTTAGAAACCAGGGATCCTTCTTTGATAAACTGATCTAGGATGGGAGTTGTAATGCTTTAATCATTTATTTTTTCTGTTTATTCTTCTCCGCGAATGTTGTTGTGCTTGATGTAATCCTGCTTCAAATGATTTATCTGCCTTAGGATTTTAGGTTTTTACCTTCGTGTGCGATTTTCGGGGATTTAGATTTATGCGACACTATCGATTGAAATGCGATATAACTTCCATAATTTACCATTGAATCATCGATCTCGAAAAGGAGAAAAGTTGATGGAATCGATCTTTTTGGTTTTTTCGTGTAGTTCTCATTTTTATTGCCTATTTTGTGGAAATTAGTACATTTTTCGTTCATCAGTCGCTGGAGATGAGAGATTGCATTTTCCTTCCAACTAGGGTTAGTCTAACAGAAACTGCTGGGAATTAGTTTTGAATTTCCTGGCTCATTATCGTATATGGCATTTATTAAATTGGCGATGCAGATGAGAATATGTGTAAGAATGGAGATTGACATCATTCTTGCTAGTTATGTATTGATAAGCGACACATATAATGTTTCAGTCGGACTTAGTGTTGATTAAGATACATGAGAAAGTTTAGATATGATTTGAGATCATCATGTCATATTATTTGAGTTTTGATATTTTCTGTAATTCATGAATGCTTGGAATCAAGCTTTAAAATACAACCAGAAAACAGTAGTAAAAGGGTTGGTTGAACTCATTAAGTAACCCACTACCAACGCCTAAAGCCACCACCGTTTGGACTTTGTAGTGGAATTGGAGCTTGAGTTGAGGCTTACGCCTTTCAAGCCAAGGCCTCAAAGTGCAAGTAAAAAGGCTTTTACACTCTACGTTCAGAGGCGTTAGGCTCTTTTTATGTGTCGTGCTGGAGGTAAGCTCTATTCGGGCCGGAGCTCGAGATCTCAATTGCCTATCATGTGCTTGAAAAGGTCCCACAGTTCCTCGGCCACACCTCCTGGCTGACAACAAGGCTACTTGGATTGATTATATTCTTTGTATTGTACAGAAAATGAAATTCCATATATGAATATATCATAGGGCGAAGTTGATGTACACCTTAAACGATTTATACCTTGCTTGGAATTGCGAGATGTTCCAAGCGACGTTCTGTTATATTTTTAAGTCCCATATTGAGTGATCTTCTCTGTTGTTTGCATCATTTGTTGACTAATTGCTGTTTGAACCTTTGAAAATGAAGAATTGAGCAGGGATATCCATTTGATCCATGGAGTAGTGGGTTCTGATCTAAGCAGTACTTATGGGAATTCCATTGTTTTGCAGGATGTCTGAAGAACCATTTAGGCCACGTGAGAAACTTATTGAAAAGCAAAAATATTTCCAGAGCATCCACAAACACACTTATCTTAAGGGGCCAATGGATAAGGTGACCTCTGTTGCCATTCCAATTGCTTTGGCAGCTTCGTCGTTGTATCTTATAGTAAGTTTATTTGTCTCTACACTGCTTGAGGATATTATTTTGTTTTCCGTTGTGAACAAATTAGCACTGTTTCATGCAGGGACGGGGAATTTATAACATGTCACACGGGATTGGAAAGAAGGAATGATTTCAAAGATCCATCTTAATCTTTATCTAATAATTGCTTAGTTGCATACTTGGTTACCAATTGGTTTGAATATCAATCTCAGATTCCTTGTTGTGCGTGGGATGGTTTGTCTCAGATTATCGTTTTTGCCCCCTTTGTAGAAATTGTTTGGTTGAGTTTGCTTTCCTGTGATCTGATTATATTTAAGAAGTGAGCAGCATATCCATAAAAACTGTTTCTTTGTTCTTTATATAGTAGTTCAAATGTTCTAGGAAGTTTGAATTTATACAAGATTATCCATTGAACGTAGATTTTATAGAGCGGATGTGATATTACGTAACAGGTTATGAAAACTTAGTTATACTATATAGTTGAGATAAAAATGTACCATATTTCA

mRNA sequence

ACCCCCGCCAAGTCGTCGTCTATCATTCGCCTCCACCAGTGGCAGTTTCCGGAACAACGATTTCTCGTCTTCCCTGAATCCTCCCCCAAATTCAAGATGTCTGAAGAACCATTTAGGCCACGTGAGAAACTTATTGAAAAGCAAAAATATTTCCAGAGCATCCACAAACACACTTATCTTAAGGGGCCAATGGATAAGGTGACCTCTGTTGCCATTCCAATTGCTTTGGCAGCTTCGTCGTTGTATCTTATAGGACGGGGAATTTATAACATGTCACACGGGATTGGAAAGAAGGAATGATTTCAAAGATCCATCTTAATCTTTATCTAATAATTGCTTAGTTGCATACTTGGTTACCAATTGGTTTGAATATCAATCTCAGATTCCTTGTTGTGCGTGGGATGGTTTGTCTCAGATTATCGTTTTTGCCCCCTTTGTAGAAATTGTTTGGTTGAGTTTGCTTTCCTGTGATCTGATTATATTTAAGAAGTGAGCAGCATATCCATAAAAACTGTTTCTTTGTTCTTTATATAGTAGTTCAAATGTTCTAGGAAGTTTGAATTTATACAAGATTATCCATTGAACGTAGATTTTATAGAGCGGATGTGATATTACGTAACAGGTTATGAAAACTTAGTTATACTATATAGTTGAGATAAAAATGTACCATATTTCA

Coding sequence (CDS)

ATGTCTGAAGAACCATTTAGGCCACGTGAGAAACTTATTGAAAAGCAAAAATATTTCCAGAGCATCCACAAACACACTTATCTTAAGGGGCCAATGGATAAGGTGACCTCTGTTGCCATTCCAATTGCTTTGGCAGCTTCGTCGTTGTATCTTATAGGACGGGGAATTTATAACATGTCACACGGGATTGGAAAGAAGGAATGA

Protein sequence

MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMSHGIGKKE

Homology

[Close]

BLAST of CmaCh02G013440.1 vs. TAIR 10
Match: AT4G21105.1 (cytochrome-c oxidases;electron carriers )

HSP 1 Score: 116.7 bits (291), Expect = 7.2e-27
Identity = 55/67 (82.09%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          ++E PFRPREKL+EKQ+ FQSI +HTYLKGPMDK+TSVAIPIALAASSLY+IG GIYNMS
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMS 61

Query: 61 HGIGKKE 68
          +GIGKKE
Sbjct: 62 NGIGKKE 68

[Close]

BLAST of CmaCh02G013440.1 vs. TAIR 10
Match: AT4G21105.2 (cytochrome-c oxidases;electron carriers )

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-12
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIP 42
          ++E PFRPREKL+EKQ+ FQSI +HTYLKGPMDK+TS+ IP
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSLFIP 42

The following BLAST results are available for this feature:

BLAST of CmaCh02G013440.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G013440.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21105.1	7.2e-27	82.09	cytochrome-c oxidases;electron carriers	[more]
AT4G21105.2	1.7e-12	73.17	cytochrome-c oxidases;electron carriers	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039297	Cytochrome c oxidase subunit VII	PFAM	PF02238	COX7a	coord: 10..62 e-value: 1.3E-16 score: 60.7
IPR039296	Predicted cytochrome c oxidase subunit VII	PANTHER	PTHR35308	CYTOCHROME C OXIDASE SUBUNIT 7	coord: 1..67
None	No IPR available	PANTHER	PTHR35308:SF10	BNAA03G58550D PROTEIN	coord: 1..67

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G013440	CmaCh02G013440	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G013440.1:exon:2507	CmaCh02G013440.1:exon:2507	exon
CmaCh02G013440.1:exon:2508	CmaCh02G013440.1:exon:2508	exon
CmaCh02G013440.1:exon:2509	CmaCh02G013440.1:exon:2509	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G013440.1:five_prime_utr	CmaCh02G013440.1:five_prime_utr	five_prime_UTR
CmaCh02G013440.1:five_prime_utr	CmaCh02G013440.1:five_prime_utr_2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G013440.1:cds	CmaCh02G013440.1:cds	CDS
CmaCh02G013440.1:cds	CmaCh02G013440.1:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G013440.1:three_prime_utr	CmaCh02G013440.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G013440.1	CmaCh02G013440.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane