CmaCh02G002790.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G002790.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr02: 1286300 .. 1289741 (-)
Sequence length228
RNA-Seq ExpressionCmaCh02G002790.1
SyntenyCmaCh02G002790.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACAGAAATTTTACCGTTTTCATCGTTGGCCTTCTCGAAGAAGAATCCAGCAGGCAGAAGCGTGCCGCCATCAACATTGCCTCCATTTCTTCCTTGTTGTAGTTCTTCAAATTCGGGTCAATTAGTTGATTTCCTTGGCCGCAACTGAGTAGAGGTCTTGCCTGTAAGTGAATGAGACGAACATGAATTTGATTGATCTGTGTTTTTTTTTTTTGTTCATCGCATTGAGTAATTTGCAGTAGACATTATTGTTGTTCGTTATTACCCAGAGTACCAAGCTTCCATGGCTGTTCTGATTTGTTTGAATCGCTTCTTTGCCTGTGATGAGTTCTAGAAGAACAACTCCATAGGAGTAGATATCTATTTTCTCGTCGATTTTTCCATACATGATGTACTCTGGAGCTAAGTATCCAAATGTCCCAACAATCTTGCATGGCTTTGTGTTGGATTGTTCATTTTGAGACTGTTTGAGCTCTGTTGCTTCCCCAAAATCTGCTAACTATGAATGGAAACACCAAATTTAAGCAGTGATTTTGAAAATGTAGATGGTTAGTGTTAGGAATTACGACACTTAACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGACTTTGCTTTGGGCTTCCCCAAAAGGCCTCGTACCAATGGAAATCTATTTCTTACTTATAAATCCATGATCTACTCCTAAATTAGCCAACGTGGAGGGGACTCCCTCCCAACAATTCTCCCATCGAACAAAGTATACCATAGAGCCTCCTCTGAGGCCTTGTAGCCCTCGAACAGCCTCTCGTTAACCGAGACTCAACTCCATTCTCTGGAGCCCTCGAACAAAGTACATCATTTGTTCGACACTTGAGTCACTTTTGACTACACCTTCGAGGCTAGCAACTTCTTTGTTCGATACTTGAGGACTCTATTGACATGACTAAGTTAAGGGCATGGATCTGATACCATGTTAGGAATTACGACTCTCCACAATGGTATGATATTGTCCACTTTTAGCATAAGCTCTCATGGTTTTGCTTTAAGCTTTCCCATAAGGCCTCATACCAAGGGAGATCTATTCCTTACTTATAAACTCATCTCAACGGGTAGAAATGTGATTGACTTACTTGGGGTTGGAAGTTATCAAAGAGGAGGATGTTTGAAGACTTTACATCTCTGTGGATGATTGGAGGGTTGCAAGAATGATGAAGATGATTCAATGCTTTTGCTACTCCAATCGCAATCGCCACTCTCTCCTTCCACTCCAGTTTTCTTAGATATTGATTTAGGCTTCCTTTAAGCAAATTGTACACAATTGCCTGCATGTTTTTATCACTACAAAATCCAATAAACTGAACTATGTTCTCATGTTTTATCTTAGATAAGATTTCAACTTCCTGAACAACATCGTCGGATTGAGAATCCGAGCTTAGAACTTTCACTGCTGCTGCTTGTCCATCTTCGAGGTTAGCTCTATACACCTTGCTATGCCCACCTTCACCAATCACCATTGCAGGATCTAAATTGTTGGTTGCATAGTTGAGCTGTTCTGATGTAAACTGCCTTTTGATTCTTTTTGGATATTGCAGTGATCTAGAACTAGGTAACAATTCATGAAGTGCAAAGTTGAGAAATGGCTTTTCTTTCTTGGAGATTTTCTGTTTTTCATTTGCTTGTAGAGAAGAGCGTAGCGTCGAACTCTTCTGTAGGTCACGGATATTAGTTTGTTGATATCCTGAATGCGAAGATCGTAAAACCGCTCTTTCGGAGCCTTGTTGCGAAGTTCCTTGGTTTTGAAATAGAATTTTGCCTAGATTGTCCATCACCATAAGAGTGCAAGTAGGAGGCAAGCCTTTTAGGCAGGTACTGAAAACTGAATAATCAGGTCTGCAGCAAAGGACCTTATAAGAAACTAAGAGGAAGAAGGAAAGAGGGTTGGAAGGGAGAGTTCATATGTTTCATCCAATACCTTGAAAGGCTACATCCAAGTACCAAAATACTGGCGTAGCTTTCTCGTACTTGACGGGTTAAGTTCGAAATATAAGGAGCGGTTTTGCTTACCTTAACCTGTAAATCGACCTGAAAAAACCAAAAAACTAATCAGTTGAAACCCAATAGAGAAGACCATCTTATTAGTTTCTGTAATTCAAGTAAGACTGATAATGGTGATAAATACCTGCTTGGATTTGCAAATATCTTCATGGATGTGGAAAGTATTTGGATTGAAACTATCATTTGGCTCTTGAACATGAATAGCCAGAACGTAATCTCCCGGATTAACGAGTGTCGTAAGCAACCAAAGGAGGATATCTCTGCTTCCATTGTCAGAATTTAGACCGATGATGATTGTCCTCTTCTTCCGAGTCTTGGGCTTGATGAGTGACAACATTTCTGAGAAGATAGTGAAGAAAGTTGATCCCTATTCTAAGCAGAATGAACACTAGACCTTATTAGGTTGCAACTCTGATGATTACTGTTTGATCTTGTCTCTACAGCATTAAAAGACTTCAAATGTAGATTACATATGAACCATTCCATCACAGCTTGAAGGGTACCCCTCCATTCTTCTGTCTTTCTCACATCACATCACCTTCCTTTACCCCACATCTTGTCTTTGTCATATCATCTCTCCATAGTTTTGATTCCTTTTATTGGTCATGGAATGATAAGGCAACTATACACCTGTCTGGATCTCTTTGAGCTAATCAAGGTGGATATTGTCTATGGTGAATGTCATTGATGTTTTGCTGCAGGAAAAAAGGAGGGAGGAAGCAGCTTCTGGCTAGATGGCAATGATAAAATAGAACAGTACGGTCACCAGCCGAGCTGCACCATTGTTCATGGTGCGTGGGAGTCCCCGAAAGGACATGAAACTGTCTGGACAGGAAGGGAGAGAGAGAGAGAGAAAACGAGTGGCAAGCCCACCACTAGGAGATATCGTCCGCTTTAGTCTGTTACTTATCGCGGTTAACCTCACGGTTTTCAAACGCGTCTACTAGAGAGAAGTTTTCACACCCTTCTAAAGAATGTTTTGTTCCCCTCTCCATCCGACAATTGTGAGATCCCACATTGATTAGAGAGGGAAACAAAACATTCCTTAGAAGGGTGTGGAACCTCTCCCTAGTAGACGCATTTGAAAACCGTGAGGTTGACGACGATACGTAACTAGCCAAAGCGGACAATATCTCGGCGGTTTGCCAGTGAGAATGTTGGACTCGGTTGGAAGGAGGTGGATGGTGAAATCGCACATCGATTGAAAAGGGGAACATAAAACGGACAATTATGTCCAAAAAGAATAAACAAGCCTTTTTGTAATGGCATTATCATCCAACTGGACAGGCAAATCTAGACTGTGCATGAATGGCAGTGGTAATTAAGCCTTTTTTCTTTCTTTCTGTAATGGCATTATCATCATTGTCTCATTCAGCCAACACCCTCCATTAA

mRNA sequence

ATGAAAACAGAAATTTTACCGTTTTCATCGTTGGCCTTCTCGAAGAAGAATCCAGCAGGCAGAAGCGTGCCGCCATCAACATTGCCTCCATTTCTTCCTTGTTGTAGTTCTTCAAATTCGGGAAAAAAGGAGGGAGGAAGCAGCTTCTGGCTAGATGGCAATGATAAAATAGAACAGTACGGTCACCAGCCGAGCTGCACCATTGTTCATGCCAACACCCTCCATTAA

Coding sequence (CDS)

ATGAAAACAGAAATTTTACCGTTTTCATCGTTGGCCTTCTCGAAGAAGAATCCAGCAGGCAGAAGCGTGCCGCCATCAACATTGCCTCCATTTCTTCCTTGTTGTAGTTCTTCAAATTCGGGAAAAAAGGAGGGAGGAAGCAGCTTCTGGCTAGATGGCAATGATAAAATAGAACAGTACGGTCACCAGCCGAGCTGCACCATTGTTCATGCCAACACCCTCCATTAA

Protein sequence

MKTEILPFSSLAFSKKNPAGRSVPPSTLPPFLPCCSSSNSGKKEGGSSFWLDGNDKIEQYGHQPSCTIVHANTLH
Homology
The following BLAST results are available for this feature:
BLAST of CmaCh02G002790.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh02G002790.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh02G002790.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh02G002790.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh02G002790CmaCh02G002790gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G002790.1:exon:239CmaCh02G002790.1:exon:239exon
CmaCh02G002790.1:exon:238CmaCh02G002790.1:exon:238exon
CmaCh02G002790.1:exon:237CmaCh02G002790.1:exon:237exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G002790.1:cdsCmaCh02G002790.1:cds_3CDS
CmaCh02G002790.1:cdsCmaCh02G002790.1:cds_2CDS
CmaCh02G002790.1:cdsCmaCh02G002790.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh02G002790.1CmaCh02G002790.1-proteinpolypeptide