CmaCh02G002200.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G002200.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr02: 973971 .. 978490 (+)
Sequence length210
RNA-Seq ExpressionCmaCh02G002200.1
SyntenyCmaCh02G002200.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAAATGGAAGTAAAACATAATCAAATCCAACATGCTTCATGGCTTCCACATGGGTTCACGTTGTCCTCTCAATAATGTAAAAAGACAAATGCATCGTTATAACAACCCAAGCACACCGCTAGTAGATATTGTCCGCTTCGATCCATTATGTATAGTTGTTTTAATATGCGTCTACTAAGGAGAGGTTTCCACACCCTTATAAGAAATGTTTTATTCCCCTCTTCAACCGATGTGCGATCTCACAGCCCACCCTCTTGGGATCCTAGCGTCCTCGCTGGCACACCGCTCGGCGCCAACTCTAATATCAATTGTAATAGCTCAAACTCACCGTTAGCAAATATTATCCACTTTGGCCAGTTATGTATCGTTATCAGTCTCACGGTTTTAAAACGATCTATTAGGGAGAGGTTTCCACACTCTTATAAGGAATGTCATTCCTCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCCTTAGGGGCCCAGTGTCTTCGCTGGCATACCGCTCGGTGCCTAGCTCTAATACCATTTGTAATAACTCAAACTCACTGCTGGCCAACAGTATCCACTTTGGCCCGTTACATATCATTATCAACCTCACGATTTTAAAATGCATTTGTTAGGGAGAGGTTTCCACATCTTTATAAGGAACGTTTCGTTTTCCTCTCCAACATCTGACAACTCCTTGAAGAAGCATGGCCATGGTGACTTTTGCAATTTACCAGAAAGAAAGATAATGATAAAGATGGTAGAAAGTGAAAGTGGAGGCTTACTAGGATCCAGCTCTGTAATGATGGCAGCTCCTTTGAAGAAACAGGATCCACCCTGATGCTTGAAGTTCTGAAAGTAAGCATTGAAGGCAAATGAAGCATGATCTTTCACTGTATTTGGGTTAAAACAAGGCTGGTTTGGTTGGATTTTGCTGCAGTTGCCGCCTCCTCTTCCACAAGCCCAATCCAAAGCCATCTGTAGTTCATCATCTGGGGTCTGCTCGTCTGCTATACACCATTGCTCAAACTCCCCACCTACTCAGAGTTCATTGTCTGGAAGTAAGTTTCATAAAACTAAGCATTTATTGACTTGAAATTTCAAATGGGCATTGGTGGTTACCTGCTTTATGCTGAATTGTGGACAGTAATAGCAGAGCCAGAGTGAGCAGGGTACCCGTCCACAGAGCAGCCATGGCAGAGAAACAGAAAGATGTTAGGATCGCACAACAACACACACTCGATCGAGATGAACACAAAGAACAGGATATTGAAAAAAATGCAAGGAGAACTCTAGCTAAAGGATCGTAAGAGAATACAAAAGTACATTTTCAAAGTTCTATTTCTATTTGATTTGATGGTATATATATATATATGGTTTAGGTTACTATACATAACCATCTACTATATATAACTATCTACCATATATATAGCTTTACTAGCTTTTTACTATATATATCTATTATATAGGTCATTTACCAAGCAGGCTCCCTAGCAAAAACAGAGTAATCTATCCGAGTAAGAAAATAGAATGGCCACAAACAGTGACATCTTAGAACGCATCTGTCTATGCGCTGCTAGGCCATGTGCTGATGCGCTGCTAGGCCATGTGCTGATGTTTCTACTTACAATTAATCGAGCAAAGCAATTGATTTTCCATATAAAATAGAGTTTGTTTTGTACAAACAAAGCTATGCTAAGGTAAATGTTTGCTTAATCCACCACACCTAAATAGTGTGAAAGTTATCTTATTTATAATCTAATGAATTACAAGGATATGGAAATAGTAATAAATGGAAATAACAATAAATAGAAAGATACCTATGATAATAAGGCAAATATCTAATATTTGCCTTATAATAAAATATCAAATATAATATATATGGTAAACTATAATTTATTACTAAATATCCTTAACACCCCACCGCAAGCTAAGCGTCGGATTTAAACGAACGTGAAGCTTGAATCTGAAAAATTCAAAGAGGTTGAGAAACACTTTTCATGAAGATGCTAACAACCCAGTTCTTGGCCATCAAAAATTTGCAGAGGGATCGCCGCTCAGCGGCGATGCTGCCTTGGCTTCGGCGAGAATATGTCTAACCCATGAAGAGGGATTGTCGCTTAGCGACGATGCTGCCTTGGCTCTGGTGAGAATATTTCTAACCCCAAGAAGTAGAAGGGGAAACCTAGAGCAAGGGACAAAGACAATGTTGAAGCCGGAAGAGTCGCCACATTGGGCGAAGGAGCCAATTTTGGCGAGAAGGGCAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAATTTTGGCAGGAAGGGCGGCGGCAACTTGGTTGGCGAATAGGCCAGTGCGGCACCCAGATTCCGAAGGTAAATCTCTGCAAAAGGTTGATAGGTTTAGGTTAGGGTTTATGTGAAGGATGAAGGTTGATTGGGAAGAAAATGAGAGAGACTATATTGGCCAAGGGGAAAACCGATTTGGTTGGAAAAGGTGAGGTTATATGTACAGAGTATGACAAAAGGTGATTTGGAGGTCAATAGGGTGGAGCCGAAGAGTAATCAATCGGCTCCGACTACGGCAGCCATGAAGACTGCCCCTGCGGCGTCAAAACCAGCAGGGGTGGTGGAGAAGAAGATTAGAGGATTCAAAAGCCATTGAAAAGAAAGGATCGGGGTTGTTAAACCGAGAGGGCTCTGATACCATGTAAATGTTTGCTTAATCCACCACACCTAAATAGTGTGAAAGTTATCTTATTTATAATCTAATGAATTACAAGGATATGGAAATAGTAATAAATGGAAATAACAATAAATAGAAAGATACCTATGATAATAAGGCAAATATCTAATATTTGCCTTATAATAAAATATCAAATATAATATATATGGTAAACTATAATTTATTACTAAATATCCTTAACAGAAATCATGATTTTGGAAGTGAAAACAGTATATGTTTCAGTGCGTAATTGTTTTTCACATCAAATCTCAAAGAACAGATAAGATTGGCCAAATGTGGATTGAGATTAGAGCTCCCTCGTGATTCCAATTCTCTATATTAGAGAATGGGACCACAGAGAATGAAACAAAGTTCTTTGTGGCATCGAGGACGGAGACAGAGAGTGCATCCCCAACCTCGCATCCCTATCCTCGACCCGCTGCTTAATATCCACATAACATACTTTTATTTTAATGGGAAGTATCAAAAAATGCTTAATTCTACTTTCTAGTGCTGAAGCCTGAATCATCTTAGTATTCAGTAGTTAGTAGAGGTGTGAGATCCCGCATCGGTTGGGAGGAGAACGAAGCATTCTTTATAAAGGTGTAGAAACATCTCCCTAACAAACACGTTTTAAAAAACTTGAGGGAAAGCCCGAAAGGAAAAGCTTAAAGAGAACAATATTTGTTAGCAGTGGGCTTGGACTGTTACAAATGATATCAGGCCAAACATCGAGCAGTGAAGAGGCTAAGCCCTGAAGAAGGGTGTACACGAGATGGTATGTCAACAAGGACGCTGGGCTTGAAAGGAGAAGATTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCTCACGTCAAATAGAGAAAGGAAAGAGTGCTAGCGATGATGCTGAGCCTCAAATGGGGTAGATTGTGAGATCTTACATCAACTAGGAGAACGAAGCATTCTTTATAAGGGTGTGAAAATCTCTCTCTAGCATACGCGTTTAGAAATCTTAAGAAAAAATCCAAAAGGAAAACCCTAAAATAGACAATATCTGATAGCAATGGACTTGGGCGGTTACCAGACGAACCCTTTCTCAGATTAGACATAAAAGTAAAACAAATAAAAGAGAATCATAACTCAAGTTGAAGATGCAATAAAAGTGATAAGTGGAGAATGACAAAAGTGATCATCTACTACTCTTTTGCTACATTGCAGGCTTACAGAAATGATATACAAATATACAACAGAACAGAACATTGCATAGGTAACAACAGCAACTGCATAACTTAAAGCCAAATTGTTGTATACATGGGAATATACAATATTTTTCAAATCTAAGTACTTGGAAACAGCAGCACACCTTCCTTCAAATGGGGTTTCTGGTGTTTCTGATTATTCGACATCCTTCCTACTTTGTTAAATCTGTCAGACTACATACAGCTAATGAAAAATGTTGAATAATTCGTAGTCAGCTCGGAAAATCTCGATAAATTGTGAAGATTTTATCTTCCCCTATGCAGTATGAGGGATGATTTCGATAAGCCATCTCGGACGAGATGAAATGTCATCAGGGTTCATAAATGAGTGAGTTTGGCAAATCATAACATTTGAGTCTACCTATGTCAAGATAAGGAATTGTGTAAATCATGCAGCCTTTCTTAGGCAAATCGAAAAGGAAAAGGAAGCACTTACCAACGAGAAGTCAAGGGCGGATGCCATCAGTTAG

mRNA sequence

ATGAAGAAAATGGAATTGCCGCCTCCTCTTCCACAAGCCCAATCCAAAGCCATCTGTAGTTCATCATCTGGGGTCTGCTCGTCTGCTATACACCATTGCTCAAACTCCCCACCTACTCAGAGTTCATTGTCTGGAACCTTTCTTAGGCAAATCGAAAAGGAAAAGGAAGCACTTACCAACGAGAAGTCAAGGGCGGATGCCATCAGTTAG

Coding sequence (CDS)

ATGAAGAAAATGGAATTGCCGCCTCCTCTTCCACAAGCCCAATCCAAAGCCATCTGTAGTTCATCATCTGGGGTCTGCTCGTCTGCTATACACCATTGCTCAAACTCCCCACCTACTCAGAGTTCATTGTCTGGAACCTTTCTTAGGCAAATCGAAAAGGAAAAGGAAGCACTTACCAACGAGAAGTCAAGGGCGGATGCCATCAGTTAG

Protein sequence

MKKMELPPPLPQAQSKAICSSSSGVCSSAIHHCSNSPPTQSSLSGTFLRQIEKEKEALTNEKSRADAIS
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 48..68

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh02G002200CmaCh02G002200gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G002200.1:exon:1338CmaCh02G002200.1:exon:1338exon
CmaCh02G002200.1:exon:1337CmaCh02G002200.1:exon:1337exon
CmaCh02G002200.1:exon:1336CmaCh02G002200.1:exon:1336exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G002200.1:cdsCmaCh02G002200.1:cdsCDS
CmaCh02G002200.1:cdsCmaCh02G002200.1:cds_2CDS
CmaCh02G002200.1:cdsCmaCh02G002200.1:cds_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh02G002200.1CmaCh02G002200.1-proteinpolypeptide