CmaCh01G005590.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AGTAAAGCCATCGTTTACCAAGAAGAACATAGAAACAGAGAGAGAAGAATATCTCGAACATTTCGTGAATTTCTTCACAGAGCTAGAGAGAGAGAGAGAGAGAGATTGTTCTTCCCGTCTTCCGTTCCTCTCCCTAGATCTTCTGATTCACTTCCCCTACTCAAGCTTCAGCCATGGTGAGCCTCTTTTCACTGATTCTTCTTCATTTGCGGATTTCTTTATCTTTTGCTTTTTCGTATTTTTTCTTCTTGATTTATAGTCTGTTTATGTTCTTCTTTCTCTGTCTTGATCTGTGATGCCTGGTAGATTTGATTTTCCGGGCTTGCGGGGTGTGGATCTGTATTATTTTATTTTTCTGATCCAGATCGTTTTAGTTTTCATTTGTCCGATTTGAGCTGGATCGGTTTTGATTTATTTAGATTTCGTTTAGGATTGATTTCAGTATCATCGGAAATACTCGGATATAGTTCGTTTCCTTGGATGTGATCGGGATTTTACTGATTGACGCCGTTCCTTGGTCATCCGAGATTGATAATTTATATTTTTCTTTAGTTTGGTGTTTTCTTGTGCTTGGTTCTGTAGTGATTGAGATGATGTTTGGTGGTTGGTGGAAAGATGGCGATATTTTGCGTGTACTATCAGAATGGTAATATTGTGAAGTAGATCGAGTGCATGTGCTTGTTGAATATGGGGCCAATGATAATTGGTTGGCGGCAGCATAGTCAGTGGACCAAAGAAGCCCCCAACGGCCGACGATAAATATAGGGAAGAATTAGAAATAAATTGGGTTTTTGATATTTTTATTGTGATGCCCACCTTTAATTTTCAATATTACATCAAATCTCGAATGCTAAAACCGCTCTCTTGAGAATCAAAATGTTATGCATTTGCCAATTGACAACTCATCGATACCAACCAATGACTGTTATCTCAATGATTGCGGAGAATTTGTGAAGATGAAGAATAGACTCTAAAAGGACCATGTGGAGATCATAATGATAATCAAGCAGGTTCGGTTCTATTACACTATGATCATGACACTCGAGGTCCCACATTGATTGGAGAAGGGAACGAGTGTCGGTGAGAACGCTGGGTCTCGAAGGGAGGTGGATCGTGAGATCCTACATCGGTTGAGGAGAAGAATGAAACATTCTTTATAAGGGTGTGAAAACCTCTCTTTAGCGAATGTATTTTAAAAATCTTGAGGGAAAGCACGAAAGGAAAAATCCAAAGAGGACAATGTCGGCTAGTTGTTGGCTTGGTCGTTACAGTAAACTTTATAAGTATTTGATTTTTCCTATGCTAGTGTTCACATCTTTGAATTCGTTCCTCTTAAGCTGTATTATCATTTTCTTCCAAATTAATTTTCAGGCTAATGCGGCATCCGGTATGGCTGTACATGATGAATGTAAGCTTAAGTTCTTAGAGCTGAAAACCAAGAGAACTTACAGATACATTGTATATAAGATTGAAGAGAAGCAAAAGCAAGTGATTGTGGAAAAAGTTGGCGAGCCAAGTCAAAGCTATGAAGATTTCACAGCTTGTCTTCCTGCTGATGAATGCCGATACGCGGTTTATGATTTTGACTTTCTCACTAAAGAGAATGTCCAGAAGAGCAGAATTTTCTTCATTGCTTGGTAATGTTACGATCAAAAAAGAAAAACAAAACGTGTAGTTAGTTCTATCACTAATCATCACCATATTCTTTTGTTGTTGCAAAGGTCTCCGGACGTATCAAAGGTAAGAAGCAAGATGATCTATGCAAGTTCAAAGGACAAGTTCAGGAGAGAATTGGATGGCATTCAAATTGAGCTGCAAGCTACTGACCCAACTGAAATGGGTCTCGATGTTTTCAACAGCCGTGCTAAATAA AGTAAAGCCATCGTTTACCAAGAAGAACATAGAAACAGAGAGAGAAGAATATCTCGAACATTTCGTGAATTTCTTCACAGAGCTAGAGAGAGAGAGAGAGAGAGATTGTTCTTCCCGTCTTCCGTTCCTCTCCCTAGATCTTCTGATTCACTTCCCCTACTCAAGCTTCAGCCATGGCTAATGCGGCATCCGGTATGGCTGTACATGATGAATGTAAGCTTAAGTTCTTAGAGCTGAAAACCAAGAGAACTTACAGATACATTGTATATAAGATTGAAGAGAAGCAAAAGCAAGTGATTGTGGAAAAAGTTGGCGAGCCAAGTCAAAGCTATGAAGATTTCACAGCTTGTCTTCCTGCTGATGAATGCCGATACGCGGTTTATGATTTTGACTTTCTCACTAAAGAGAATGTCCAGAAGAGCAGAATTTTCTTCATTGCTTGGTCTCCGGACGTATCAAAGGTAAGAAGCAAGATGATCTATGCAAGTTCAAAGGACAAGTTCAGGAGAGAATTGGATGGCATTCAAATTGAGCTGCAAGCTACTGACCCAACTGAAATGGGTCTCGATGTTTTCAACAGCCGTGCTAAATAA ATGGCTAATGCGGCATCCGGTATGGCTGTACATGATGAATGTAAGCTTAAGTTCTTAGAGCTGAAAACCAAGAGAACTTACAGATACATTGTATATAAGATTGAAGAGAAGCAAAAGCAAGTGATTGTGGAAAAAGTTGGCGAGCCAAGTCAAAGCTATGAAGATTTCACAGCTTGTCTTCCTGCTGATGAATGCCGATACGCGGTTTATGATTTTGACTTTCTCACTAAAGAGAATGTCCAGAAGAGCAGAATTTTCTTCATTGCTTGGTCTCCGGACGTATCAAAGGTAAGAAGCAAGATGATCTATGCAAGTTCAAAGGACAAGTTCAGGAGAGAATTGGATGGCATTCAAATTGAGCTGCAAGCTACTGACCCAACTGAAATGGGTCTCGATGTTTTCAACAGCCGTGCTAAATAA MANAASGMAVHDECKLKFLELKTKRTYRYIVYKIEEKQKQVIVEKVGEPSQSYEDFTACLPADECRYAVYDFDFLTKENVQKSRIFFIAWSPDVSKVRSKMIYASSKDKFRRELDGIQIELQATDPTEMGLDVFNSRAK Homology
BLAST of CmaCh01G005590.1 vs. ExPASy Swiss-Prot
Match: Q9FVI1 (Actin-depolymerizing factor 2 OS=Petunia hybrida OX=4102 GN=ADF2 PE=2 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 2.1e-65 Identity = 119/138 (86.23%), Postives = 133/138 (96.38%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. ExPASy Swiss-Prot
Match: Q39250 (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana OX=3702 GN=ADF1 PE=1 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 3.3e-63 Identity = 114/138 (82.61%), Postives = 130/138 (94.20%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. ExPASy Swiss-Prot
Match: Q9FVI2 (Actin-depolymerizing factor 1 OS=Petunia hybrida OX=4102 GN=ADF1 PE=2 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 4.0e-61 Identity = 112/138 (81.16%), Postives = 127/138 (92.03%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. ExPASy Swiss-Prot
Match: Q9ZSK3 (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana OX=3702 GN=ADF4 PE=1 SV=2) HSP 1 Score: 235.3 bits (599), Expect = 4.0e-61 Identity = 114/137 (83.21%), Postives = 126/137 (91.97%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. ExPASy Swiss-Prot
Match: Q9ZSK4 (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana OX=3702 GN=ADF3 PE=1 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 1.0e-59 Identity = 108/138 (78.26%), Postives = 127/138 (92.03%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. ExPASy TrEMBL
Match: A0A6J1K8K8 (actin-depolymerizing factor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111492671 PE=3 SV=1) HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. ExPASy TrEMBL
Match: A0A6J1GA03 (actin-depolymerizing factor 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452299 PE=3 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 1.5e-71 Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. ExPASy TrEMBL
Match: A0A6J1DU41 (actin-depolymerizing factor 2 OS=Momordica charantia OX=3673 GN=LOC111023124 PE=3 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 2.2e-70 Identity = 135/139 (97.12%), Postives = 138/139 (99.28%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. ExPASy TrEMBL
Match: A0A6J1HYW9 (actin-depolymerizing factor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111469374 PE=3 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 2.1e-68 Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. ExPASy TrEMBL
Match: A0A6J1HNW0 (actin-depolymerizing factor 2-like OS=Cucurbita moschata OX=3662 GN=LOC111464666 PE=3 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 2.1e-68 Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. NCBI nr
Match: XP_022997831.1 (actin-depolymerizing factor 2-like [Cucurbita maxima]) HSP 1 Score: 278.9 bits (712), Expect = 2.4e-71 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. NCBI nr
Match: XP_022948707.1 (actin-depolymerizing factor 2-like [Cucurbita moschata] >XP_023521573.1 actin-depolymerizing factor 2-like [Cucurbita pepo subsp. pepo] >XP_023523187.1 actin-depolymerizing factor 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023523188.1 actin-depolymerizing factor 2-like isoform X2 [Cucurbita pepo subsp. pepo] >KAG6607202.1 Actin-depolymerizing factor 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036888.1 Actin-depolymerizing factor 2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 278.5 bits (711), Expect = 3.2e-71 Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. NCBI nr
Match: XP_022156171.1 (actin-depolymerizing factor 2 [Momordica charantia]) HSP 1 Score: 274.6 bits (701), Expect = 4.6e-70 Identity = 135/139 (97.12%), Postives = 138/139 (99.28%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. NCBI nr
Match: XP_022964654.1 (actin-depolymerizing factor 2-like [Cucurbita moschata] >XP_022970372.1 actin-depolymerizing factor 2-like [Cucurbita maxima] >XP_023519424.1 actin-depolymerizing factor 2-like [Cucurbita pepo subsp. pepo] >KAG6583469.1 Actin-depolymerizing factor 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019224.1 Actin-depolymerizing factor 2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 268.1 bits (684), Expect = 4.3e-68 Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. NCBI nr
Match: XP_038894943.1 (actin-depolymerizing factor 2-like [Benincasa hispida]) HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65 Identity = 127/139 (91.37%), Postives = 132/139 (94.96%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. TAIR 10
Match: AT3G46010.1 (actin depolymerizing factor 1 ) HSP 1 Score: 242.3 bits (617), Expect = 2.4e-64 Identity = 114/138 (82.61%), Postives = 130/138 (94.20%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. TAIR 10
Match: AT3G46010.2 (actin depolymerizing factor 1 ) HSP 1 Score: 240.7 bits (613), Expect = 6.8e-64 Identity = 113/137 (82.48%), Postives = 129/137 (94.16%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. TAIR 10
Match: AT5G59890.1 (actin depolymerizing factor 4 ) HSP 1 Score: 235.3 bits (599), Expect = 2.9e-62 Identity = 114/137 (83.21%), Postives = 126/137 (91.97%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. TAIR 10
Match: AT5G59880.1 (actin depolymerizing factor 3 ) HSP 1 Score: 230.7 bits (587), Expect = 7.1e-61 Identity = 108/138 (78.26%), Postives = 127/138 (92.03%), Query Frame = 0
BLAST of CmaCh01G005590.1 vs. TAIR 10
Match: AT3G46000.1 (actin depolymerizing factor 2 ) HSP 1 Score: 228.0 bits (580), Expect = 4.6e-60 Identity = 110/137 (80.29%), Postives = 124/137 (90.51%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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