CmaCh00G002670.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G002670.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Regulator of rDNA transcription protein 15
Location	Cma_Chr00: 20584616 .. 20585194 (-)
Sequence length	465
RNA-Seq Expression	CmaCh00G002670.1
Synteny	CmaCh00G002670.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCAGTCCCGAACCCGTCGGCTGTTGGTGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGAGTCGCTGCGTGCCGGCTGGGGGACGGACTAGGAACGGCTCCTTCGGGGGCCTTCCCCGGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCAGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGATGCTAACGCAATTTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGTCTTTGAATTGCAGGATCCCGCGAACCACCGAGTCTTTGAACGCAAGTTGCGCCCGGAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCTGCCCCCACATACAACAACCACTTAGGTTTGTTGCATTTGCGGGGGCACATGTTGGCCTCCCGTGTGCACCGTCGCCCGGATGGACCAGAAGCCGGGTTACGGTGCCTAACTACGCGCTAACCTAG

mRNA sequence

ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCAGTCCCGAACCCGTCGGCTGTTGGTGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGAGTCGCTGCGTGCCGGCTGGGGGACGGACTAGGAACGGCTCCTTCGGGGGCCTTCCCCGGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCAGACTGATCCCGCGAACCACCGAGTCTTTGAACGCAAGTTGCGCCCGGAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCTGCCCCCACATACAACAACCACTTAGGTTTGTTGCATTTGCGGGGGCACATGTTGGCCTCCCGTGTGCACCGTCGCCCGGATGGACCAGAAGCCGGGTTACGGTGCCTAACTACGCGCTAACCTAG

Coding sequence (CDS)

ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCAGTCCCGAACCCGTCGGCTGTTGGTGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGAGTCGCTGCGTGCCGGCTGGGGGACGGACTAGGAACGGCTCCTTCGGGGGCCTTCCCCGGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCAGACTGATCCCGCGAACCACCGAGTCTTTGAACGCAAGTTGCGCCCGGAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCTGCCCCCACATACAACAACCACTTAGGTTTGTTGCATTTGCGGGGGCACATGTTGGCCTCCCGTGTGCACCGTCGCCCGGATGGACCAGAAGCCGGGTTACGGTGCCTAACTACGCGCTAACCTAG

Protein sequence

MEQCRQGKSAKWIRNLGKRIGSEGWARGSSPEPVGCWWTARAAPAARASRCVPAGGRTRNGSFGGLPRASNSQLRTGTDKGNQTDPANHRVFERKLRPEPSGRGHVCLGVTHRCPHIQQPLRFVAFAGAHVGLPCAPSPGWTRSRVTVPNYALT

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh00G002670.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh00G002670.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..85
None	No IPR available	PANTHER	PTHR33220	BNAA09G04420D PROTEIN	coord: 86..149

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh00G002670	CmaCh00G002670	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G002670.1:exon:2184	CmaCh00G002670.1:exon:2184	exon
CmaCh00G002670.1:exon:2185	CmaCh00G002670.1:exon:2185	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G002670.1:cds	CmaCh00G002670.1:cds_2	CDS
CmaCh00G002670.1:cds	CmaCh00G002670.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh00G002670.1	CmaCh00G002670.1-protein	polypeptide