CmaCh00G001860.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G001860.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Reverse transcriptase
Location	Cma_Chr00: 11611277 .. 11613731 (+)
Sequence length	1866
RNA-Seq Expression	CmaCh00G001860.1
Synteny	CmaCh00G001860.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCACCGCCTATAGGGTAAAGGATGGTCACATAGTAATATCAGGGGTTAGCTTGGGTGTAGACTTGATGGTGGTCGATATGACCGTGTACGATGTAATCCTAGACATGGACTGGTTGGCGGAAAATCATGCTAGCATAGACTGTCACAAGAGGGAGGTCATTTTCACACCACCATCGAGGACCAGATTCAGGTTCAGGGGCACCAGTCTGGGAACGATGCCCAAGGTGATATCGATGATGAAGGCGAAGAAGCTGGTCCGGCACGGGGCCTGGGCGATACTAGCCATCATGGCAAGGATCAAGGAAGAAGGCGTCCCCCTAACCGAGTTTCCAATAGTGAGTGAGTTCCCAGATGTGTTTCCAGAGGACCTACCGGGGACTCCCCCATCCCGAGATGTCGACTTTGCTATAGAACTGGAATCAGGGACCGGCCCCATATCCAAGGCATCGTACCGCATGGCACCAGCAGAGCTGGAGGAACTTAAGGTGCAACTATAAGAACTCCTAGACAAGGGGTTTATTAGACCGAGCGTGTCGCCTTGGGGCGCACCGGTATTATTCGTCAATTAAAAGGACGGTTCCATGCGCTTGTTCGTCGATTACAGGGAACTGAATAAGAGGACAGTGAAGAACAGGTACCCCCTCCCACACATCGAAGACTTATTTGATCAGCTCAGAGAGGCCACGATGTTTTCAAAGATCGATCTTCGTTCAGGTTACCACCAAGATCAAGATAAAAAATGAGGACGTGCCAAAAACAGCTTTTAGAACAAGGTACGACCATTATGAGTTTGTAGTAATGTCATTTAGACTCACTAATGCTCCTGCAGTGTTTATGGAACTGATGAATCGGGTGTTCAAGGAATACTTGGATACCTTTGTCATTGTATTCATAGATGACATCCTGGTATATTCAAGGACGGATTAGGAGCACCAAACGCACCTGAGGAAGGCCTTGACAGTCTTGAGGGAAAACAGGTTGTGTGGCAAGTTCTCGAAATGCGAGTTTTGGTTACGCGAAGTCTCATTCCTAGGACATGTGATATCGGTAGAAGGAGTGTCAGTTGACCCTGCCAAGGTGGAGGCGTTCACCGGCTGGGCCCGTCCAACTACTGTGACTGAGGTACGGAGTTTTCTGGGTCTGGCAGGCTACTACCGTTGCTTCGTGCAGGACTTCTCCAAGATAGCGACACCTCTCTCACGACTGACTCGAAAGGTTACGGCGTTCGTATGGACCGAGGAGTGCGAGGCAAGCTTCCGGGATCTGGACGAGAGACTGGAGACTGCACTCGTGCTCACAATGCCCGATGGTACAGGGAACTACGTCATTTTTAGTGATGCTTCCAAAAAGAGCCTAGGGTGCGTGTTGATGCAACGTGGGAGGGTTATTGCCTACGCATCCAGACAACTGAAGGACTATGAAAAGAACTACCTTGTGCATGACTTGGAACTGGCAGCAGTAGTCTTCGCATTAAAGATATGGCGACACTACTTGTATGGGGAGAGGACTCAAATCTATACCGATCATAAGAGCCTGAAGTACTTCTTCACCCAGAAGAAATTGAATATGAGGCAACAATGGTGGCTTCAGCTAGTCAAGAATTATGATATAGATATCCAGTACTACACCAGGAAGGCCAACGTAGTCATAGATGCCCTGAGTAAGAAGGCAGCGCATTCGTCGGCACTATTCATGAAAGAACCCCGAGTGCAGGTAGACTTCGAGCGAGCGGGGATAGCAGTAGCACTGAAGGGTATTAAGGCGCAACTGCCTCGACTAATGTTGCAACCCACCCTTCGGCAGAGAATCATTGAGGCGCAGGCAAGGGACTCCGGTTTAACGAGGGCACTTAACAAAAGGTTTCATAACCAGCGGGTGGGTACTCCAAGGCAGCGAAGCACATAACTCCCCATTCGTCATGCACCCTGGCGGCACGAAGATGTATCAGGACCTCAGACCCCACTTCTGGTGGTGTGGTATGAAGAAGGATATCGCGGAGTTCGTCAGCAGATGCTTGGTTTGCCAACATGTTAAGCACCCAGACAGAGACCAGCAGGATTACTACAGCCCCTCAACATACCAGAGTGGAAGTGGGAGAACATCGCCATGGATTTCATAGTGGGCCTACCCAAAACGCTAAAGGGTTACACGGTCATATGGGTGGTCGTGGACAGATTAACGAAGTCAGCACATTTCCTCCCCGGCAAGGCCACCTATATAGTGGACATGTGGGCACAACTATACATGAAGGAAATCGTCAGGTTGCATGGGGTCCCCATGTCGATTGTATCAGACCGAGATCCACGGTTTACTTCGGCATTTTGGCGTGGACTCCAGAAGGCGTTGGGCACTCGACTGGACTTTAGCATAGCGTATCACCCACAGACTGATGGCCAAACAGAACGCTTGAACCAAGTTCTAGAGGACATGTTGCGGGCATGTTACCCTTGA

mRNA sequence

ATGGTCACCGCCTATAGGGTAAAGGATGGTCACATAGTAATATCAGGGGTTAGCTTGGGTGTAGACTTGATGGTGGTCGATATGACCGTGTACGATGTAATCCTAGACATGGACTGGTTGGCGGAAAATCATGCTAGCATAGACTGTCACAAGAGGGAGGTCATTTTCACACCACCATCGAGGACCAGATTCAGGTTCAGGGGCACCAGTCTGGGAACGATGCCCAAGGTGATATCGATGATGAAGGCGAAGAAGCTGGTCCGGCACGGGGCCTGGGCGATACTAGCCATCATGGCAAGGATCAAGGAAGAAGGCGTCCCCCTAACCGAGTTTCCAATAGTGAGTGAGTTCCCAGATGTGTTTCCAGAGGACCTACCGGGGACTCCCCCATCCCGAGATGTCGACTTTGCTATAGAACTGGAATCAGGGACCGGCCCCATATCCAAGGCATCGTACCGCATGGCACCAGCAGAGCTGGAGGAACTTAAGGACGGTTCCATGCGCTTGTTCGTCGATTACAGGGAACTGAATAAGAGGACAGTGAAGAACAGGTACCCCCTCCCACACATCGAAGACTTATTTGATCAGCTCAGAGAGGCCACGATGTTTTCAAAGATCGATCTTCGTTCAGGACATGTGATATCGGTAGAAGGAGTGTCAGTTGACCCTGCCAAGGTGGAGGCGTTCACCGGCTGGGCCCGTCCAACTACTGTGACTGAGGTACGGAGTTTTCTGGGTCTGGCAGGCTACTACCGTTGCTTCGTGCAGGACTTCTCCAAGATAGCGACACCTCTCTCACGACTGACTCGAAAGGTTACGGCGTTCGTATGGACCGAGGAGTGCGAGGCAAGCTTCCGGGATCTGGACGAGAGACTGGAGACTGCACTCGTGCTCACAATGCCCGATGGTACAGGGAACTACGTCATTTTTAGTGATGCTTCCAAAAAGAGCCTAGGGTGCGTGTTGATGCAACGTGGGAGGGTTATTGCCTACGCATCCAGACAACTGAAGGACTATGAAAAGAACTACCTTGTGCATGACTTGGAACTGGCAGCAGTAGTCTTCGCATTAAAGATATGGCGACACTACTTGTATGGGGAGAGGACTCAAATCTATACCGATCATAAGAGCCTGAAGTACTTCTTCACCCAGAAGAAATTGAATATGAGGCAACAATGGTGGCTTCAGCTAGTCAAGAATTATGATATAGATATCCAGTACTACACCAGGAAGGCCAACGTAGTCATAGATGCCCTGAGTAAGAAGGCAGCGCATTCGTCGGCACTATTCATGAAAGAACCCCGAGTGCAGGTAGACTTCGAGCGAGCGGGGATAGCAGTAGCACTGAAGGGTATTAAGGCGCAACTGCCTCGACTAATGTTGCAACCCACCCTTCGGCAGAGAATCATTGAGGCGCAGGCAAGGGACTCCGGTTTAACGAGGGCACTTAACAAAAGACAGAGACCAGCAGGATTACTACAGCCCCTCAACATACCAGAGTGGAAGTGGGAGAACATCGCCATGGATTTCATAGTGGGCCTACCCAAAACGCTAAAGGGTTACACGGTCATATGGGTGGTCGTGGACAGATTAACGAAGTCAGCACATTTCCTCCCCGGCAAGGCCACCTATATAGTGGACATGTGGGCACAACTATACATGAAGGAAATCGTCAGGTTGCATGGGGTCCCCATGTCGATTGTATCAGACCGAGATCCACGGTTTACTTCGGCATTTTGGCGTGGACTCCAGAAGGCGTTGGGCACTCGACTGGACTTTAGCATAGCGTATCACCCACAGACTGATGGCCAAACAGAACGCTTGAACCAAGTTCTAGAGGACATGTTGCGGGCATGTTACCCTTGA

Coding sequence (CDS)

ATGGTCACCGCCTATAGGGTAAAGGATGGTCACATAGTAATATCAGGGGTTAGCTTGGGTGTAGACTTGATGGTGGTCGATATGACCGTGTACGATGTAATCCTAGACATGGACTGGTTGGCGGAAAATCATGCTAGCATAGACTGTCACAAGAGGGAGGTCATTTTCACACCACCATCGAGGACCAGATTCAGGTTCAGGGGCACCAGTCTGGGAACGATGCCCAAGGTGATATCGATGATGAAGGCGAAGAAGCTGGTCCGGCACGGGGCCTGGGCGATACTAGCCATCATGGCAAGGATCAAGGAAGAAGGCGTCCCCCTAACCGAGTTTCCAATAGTGAGTGAGTTCCCAGATGTGTTTCCAGAGGACCTACCGGGGACTCCCCCATCCCGAGATGTCGACTTTGCTATAGAACTGGAATCAGGGACCGGCCCCATATCCAAGGCATCGTACCGCATGGCACCAGCAGAGCTGGAGGAACTTAAGGACGGTTCCATGCGCTTGTTCGTCGATTACAGGGAACTGAATAAGAGGACAGTGAAGAACAGGTACCCCCTCCCACACATCGAAGACTTATTTGATCAGCTCAGAGAGGCCACGATGTTTTCAAAGATCGATCTTCGTTCAGGACATGTGATATCGGTAGAAGGAGTGTCAGTTGACCCTGCCAAGGTGGAGGCGTTCACCGGCTGGGCCCGTCCAACTACTGTGACTGAGGTACGGAGTTTTCTGGGTCTGGCAGGCTACTACCGTTGCTTCGTGCAGGACTTCTCCAAGATAGCGACACCTCTCTCACGACTGACTCGAAAGGTTACGGCGTTCGTATGGACCGAGGAGTGCGAGGCAAGCTTCCGGGATCTGGACGAGAGACTGGAGACTGCACTCGTGCTCACAATGCCCGATGGTACAGGGAACTACGTCATTTTTAGTGATGCTTCCAAAAAGAGCCTAGGGTGCGTGTTGATGCAACGTGGGAGGGTTATTGCCTACGCATCCAGACAACTGAAGGACTATGAAAAGAACTACCTTGTGCATGACTTGGAACTGGCAGCAGTAGTCTTCGCATTAAAGATATGGCGACACTACTTGTATGGGGAGAGGACTCAAATCTATACCGATCATAAGAGCCTGAAGTACTTCTTCACCCAGAAGAAATTGAATATGAGGCAACAATGGTGGCTTCAGCTAGTCAAGAATTATGATATAGATATCCAGTACTACACCAGGAAGGCCAACGTAGTCATAGATGCCCTGAGTAAGAAGGCAGCGCATTCGTCGGCACTATTCATGAAAGAACCCCGAGTGCAGGTAGACTTCGAGCGAGCGGGGATAGCAGTAGCACTGAAGGGTATTAAGGCGCAACTGCCTCGACTAATGTTGCAACCCACCCTTCGGCAGAGAATCATTGAGGCGCAGGCAAGGGACTCCGGTTTAACGAGGGCACTTAACAAAAGACAGAGACCAGCAGGATTACTACAGCCCCTCAACATACCAGAGTGGAAGTGGGAGAACATCGCCATGGATTTCATAGTGGGCCTACCCAAAACGCTAAAGGGTTACACGGTCATATGGGTGGTCGTGGACAGATTAACGAAGTCAGCACATTTCCTCCCCGGCAAGGCCACCTATATAGTGGACATGTGGGCACAACTATACATGAAGGAAATCGTCAGGTTGCATGGGGTCCCCATGTCGATTGTATCAGACCGAGATCCACGGTTTACTTCGGCATTTTGGCGTGGACTCCAGAAGGCGTTGGGCACTCGACTGGACTTTAGCATAGCGTATCACCCACAGACTGATGGCCAAACAGAACGCTTGAACCAAGTTCTAGAGGACATGTTGCGGGCATGTTACCCTTGA

Protein sequence

MVTAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPSRTRFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDVFPEDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEELKDGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRSGHVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDIQYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLMLQPTLRQRIIEAQARDSGLTRALNKRQRPAGLLQPLNIPEWKWENIAMDFIVGLPKTLKGYTVIWVVVDRLTKSAHFLPGKATYIVDMWAQLYMKEIVRLHGVPMSIVSDRDPRFTSAFWRGLQKALGTRLDFSIAYHPQTDGQTERLNQVLEDMLRACYP

Homology

[Close]

BLAST of CmaCh00G001860.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 194.1 bits (492), Expect = 4.6e-48
Identity = 172/653 (26.34%), Postives = 252/653 (38.59%), Query Frame = 0


Query: 155  APAELEELKDGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRSG-HV 214
            +P  L   KDG+ RL VDYR LNK T+ + +PLP I++L  ++  A +F+ +DL SG H 
Sbjct: 634  SPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQ 693

Query: 215  ISVE-------------------------------------------------------- 274
            I +E                                                        
Sbjct: 694  IPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIF 753

Query: 275  ----------------------------------------GVSVDPAKV-------EAFT 334
                                                    G S+   K+        A  
Sbjct: 754  SESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIR 813

Query: 335  GWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASFRDLDE 394
             +  P TV + + FLG+  YYR F+ + SKIA P+       +   WTE+ + +   L +
Sbjct: 814  DFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ--WTEKQDKAIDKLKD 873

Query: 395  RLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGR------VIAYASRQLKDYEKNYL 454
             L  + VL   +   NY + +DASK  +G VL +         V+ Y S+ L+  +KNY 
Sbjct: 874  ALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYP 933

Query: 455  VHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDID 514
              +LEL  ++ AL  +R+ L+G+   + TDH SL     + +   R Q WL  +  YD  
Sbjct: 934  AGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFT 993

Query: 515  IQYYTRKANVVIDALSK------------------------------------------- 574
            ++Y     NVV DA+S+                                           
Sbjct: 994  LEYLAGPKNVVADAISRAVYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNV 1053

Query: 575  ------------KAAHSSALFMK-----------EPRVQVDFERAGIAVALK-------- 619
                        K    S  F K           + R+ V  ++    + L         
Sbjct: 1054 TPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHTLFGG 1113

[Close]

BLAST of CmaCh00G001860.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 193.7 bits (491), Expect = 6.0e-48
Identity = 172/653 (26.34%), Postives = 251/653 (38.44%), Query Frame = 0


Query: 155  APAELEELKDGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRSG-HV 214
            +P  L   KDG+ RL VDYR LNK T+ + +PLP I++L  ++  A +F+ +DL SG H 
Sbjct: 660  SPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQ 719

Query: 215  ISVE-------------------------------------------------------- 274
            I +E                                                        
Sbjct: 720  IPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIF 779

Query: 275  ----------------------------------------GVSVDPAKV-------EAFT 334
                                                    G S+   K+        A  
Sbjct: 780  SESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIR 839

Query: 335  GWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASFRDLDE 394
             +  P TV + + FLG+  YYR F+ + SKIA P+       +   WTE+ + +   L  
Sbjct: 840  DFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ--WTEKQDKAIEKLKA 899

Query: 395  RLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGR------VIAYASRQLKDYEKNYL 454
             L  + VL   +   NY + +DASK  +G VL +         V+ Y S+ L+  +KNY 
Sbjct: 900  ALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYP 959

Query: 455  VHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDID 514
              +LEL  ++ AL  +R+ L+G+   + TDH SL     + +   R Q WL  +  YD  
Sbjct: 960  AGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFT 1019

Query: 515  IQYYTRKANVVIDALSK------------------------------------------- 574
            ++Y     NVV DA+S+                                           
Sbjct: 1020 LEYLAGPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNV 1079

Query: 575  ------------KAAHSSALFMK-----------EPRVQVDFERAGIAVALK-------- 619
                        K    S  F K           + R+ V  ++    + L         
Sbjct: 1080 TPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHTLFGG 1139

[Close]

BLAST of CmaCh00G001860.1 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 6.2e-45
Identity = 165/678 (24.34%), Postives = 267/678 (39.38%), Query Frame = 0


Query: 126  PGTPPSRDVDFAIELESGTGPISKASYRMAPAELEELKDGSMRLFVDYRELNKRTVKNRY 185
            PG   + + +    L+SG    SKA     P      K+G++R+ VDY+ LNK    N Y
Sbjct: 422  PGKMQAMNDEINQGLKSGIIRESKA-INACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 481

Query: 186  PLPHIEDLFDQLREATMFSKIDLRSG-HVISVE-----------------------GVSV 245
            PLP IE L  +++ +T+F+K+DL+S  H+I V                        G+S+
Sbjct: 482  PLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISI 541

Query: 246  DPAKVEAFTG-------------------------------------------------- 305
             PA  + F                                                    
Sbjct: 542  APAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAK 601

Query: 306  --------------------------------WARPTTVTEVRSFLGLAGYYRCFVQDFS 365
                                            W +P    E+R FLG   Y R F+   S
Sbjct: 602  CEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS 661

Query: 366  KIATPLSRLTRKVTAFVWTEECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLG 425
            ++  PL+ L +K   + WT     +  ++ + L +  VL   D +   ++ +DAS  ++G
Sbjct: 662  QLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVG 721

Query: 426  CVLMQRG-----RVIAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLYG--ERTQIY 485
             VL Q+        + Y S ++   + NY V D E+ A++ +LK WRHYL    E  +I 
Sbjct: 722  AVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKIL 781

Query: 486  TDHKSLKYFFTQKK--LNMRQQWWLQLVKNYDIDIQYYTRKANVVIDALS---------- 545
            TDH++L    T +    N R   W   +++++ +I Y    AN + DALS          
Sbjct: 782  TDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIP 841

Query: 546  KKAAHSSALFMKEPRVQVDFERAGIAVALKGIK--------------------------- 605
            K +  +S  F+ +  +  DF+   +       K                           
Sbjct: 842  KDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSK 901

Query: 606  --------AQLPRLMLQP------------TLRQRIIEAQARDSGLTRAL---------- 618
                     QL R +++              L   II  +    G+ + +          
Sbjct: 902  DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 961

[Close]

BLAST of CmaCh00G001860.1 vs. ExPASy Swiss-Prot
Match: P0CT42 (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-7 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 6.2e-45
Identity = 165/678 (24.34%), Postives = 267/678 (39.38%), Query Frame = 0


Query: 126  PGTPPSRDVDFAIELESGTGPISKASYRMAPAELEELKDGSMRLFVDYRELNKRTVKNRY 185
            PG   + + +    L+SG    SKA     P      K+G++R+ VDY+ LNK    N Y
Sbjct: 422  PGKMQAMNDEINQGLKSGIIRESKA-INACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 481

Query: 186  PLPHIEDLFDQLREATMFSKIDLRSG-HVISVE-----------------------GVSV 245
            PLP IE L  +++ +T+F+K+DL+S  H+I V                        G+S+
Sbjct: 482  PLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISI 541

Query: 246  DPAKVEAFTG-------------------------------------------------- 305
             PA  + F                                                    
Sbjct: 542  APAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAK 601

Query: 306  --------------------------------WARPTTVTEVRSFLGLAGYYRCFVQDFS 365
                                            W +P    E+R FLG   Y R F+   S
Sbjct: 602  CEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS 661

Query: 366  KIATPLSRLTRKVTAFVWTEECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLG 425
            ++  PL+ L +K   + WT     +  ++ + L +  VL   D +   ++ +DAS  ++G
Sbjct: 662  QLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVG 721

Query: 426  CVLMQRG-----RVIAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLYG--ERTQIY 485
             VL Q+        + Y S ++   + NY V D E+ A++ +LK WRHYL    E  +I 
Sbjct: 722  AVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKIL 781

Query: 486  TDHKSLKYFFTQKK--LNMRQQWWLQLVKNYDIDIQYYTRKANVVIDALS---------- 545
            TDH++L    T +    N R   W   +++++ +I Y    AN + DALS          
Sbjct: 782  TDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIP 841

Query: 546  KKAAHSSALFMKEPRVQVDFERAGIAVALKGIK--------------------------- 605
            K +  +S  F+ +  +  DF+   +       K                           
Sbjct: 842  KDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSK 901

Query: 606  --------AQLPRLMLQP------------TLRQRIIEAQARDSGLTRAL---------- 618
                     QL R +++              L   II  +    G+ + +          
Sbjct: 902  DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 961

[Close]

BLAST of CmaCh00G001860.1 vs. ExPASy Swiss-Prot
Match: P0CT43 (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-8 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 6.2e-45
Identity = 165/678 (24.34%), Postives = 267/678 (39.38%), Query Frame = 0


Query: 126  PGTPPSRDVDFAIELESGTGPISKASYRMAPAELEELKDGSMRLFVDYRELNKRTVKNRY 185
            PG   + + +    L+SG    SKA     P      K+G++R+ VDY+ LNK    N Y
Sbjct: 422  PGKMQAMNDEINQGLKSGIIRESKA-INACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 481

Query: 186  PLPHIEDLFDQLREATMFSKIDLRSG-HVISVE-----------------------GVSV 245
            PLP IE L  +++ +T+F+K+DL+S  H+I V                        G+S+
Sbjct: 482  PLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISI 541

Query: 246  DPAKVEAFTG-------------------------------------------------- 305
             PA  + F                                                    
Sbjct: 542  APAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAK 601

Query: 306  --------------------------------WARPTTVTEVRSFLGLAGYYRCFVQDFS 365
                                            W +P    E+R FLG   Y R F+   S
Sbjct: 602  CEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS 661

Query: 366  KIATPLSRLTRKVTAFVWTEECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLG 425
            ++  PL+ L +K   + WT     +  ++ + L +  VL   D +   ++ +DAS  ++G
Sbjct: 662  QLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVG 721

Query: 426  CVLMQRG-----RVIAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLYG--ERTQIY 485
             VL Q+        + Y S ++   + NY V D E+ A++ +LK WRHYL    E  +I 
Sbjct: 722  AVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKIL 781

Query: 486  TDHKSLKYFFTQKK--LNMRQQWWLQLVKNYDIDIQYYTRKANVVIDALS---------- 545
            TDH++L    T +    N R   W   +++++ +I Y    AN + DALS          
Sbjct: 782  TDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIP 841

Query: 546  KKAAHSSALFMKEPRVQVDFERAGIAVALKGIK--------------------------- 605
            K +  +S  F+ +  +  DF+   +       K                           
Sbjct: 842  KDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSK 901

Query: 606  --------AQLPRLMLQP------------TLRQRIIEAQARDSGLTRAL---------- 618
                     QL R +++              L   II  +    G+ + +          
Sbjct: 902  DQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTC 961

[Close]

BLAST of CmaCh00G001860.1 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 783.1 bits (2021), Expect = 8.6e-223
Identity = 419/789 (53.11%), Postives = 514/789 (65.15%), Query Frame = 0


Query: 1    MVTAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPS 60
            +++  +VK   I I+G  + V L+V+DM  +DVIL MDWLA NHASIDC ++EV F PPS
Sbjct: 425  LLSREKVKACQIEIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 484

Query: 61   RTRFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDV 120
               F+F+G    ++P+VIS ++A KL+  G W ILA +   +E  V L+  P+V ++PDV
Sbjct: 485  MASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDV 544

Query: 121  FPEDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEEL-KDGSMRLFVDYRELNKR 180
            FPE+LPG PP R+V+FAIELE GT PIS+A YRMAPAEL+EL KDGSMRL +DYRELNK 
Sbjct: 545  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKKDGSMRLCIDYRELNKV 604

Query: 181  TVKNRYPLPHIEDLFDQLREATMFSKIDLRS----------------------------- 240
            TVKNRYPLP I+DLFDQL+ A +FSK DLRS                             
Sbjct: 605  TVKNRYPLPRIDDLFDQLQGAIVFSKFDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVM 664

Query: 241  ------------------------------------------------------GHVISV 300
                                                                  GHV+S 
Sbjct: 665  SFGLTNAPAVFMDLMNRVFRKFLDTFVIVFIDDILIYSKTEAEHEEHLRMVSFLGHVVSK 724

Query: 301  EGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFV 360
             GVSVDPAK+EA TGW RP+TV+EVRSFLGLAGYYR FV++FS+IATPL++LTRK   FV
Sbjct: 725  AGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 784

Query: 361  WTEECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQL 420
            W++ CE SF++L ++L TA VLT+PDG+G++VI+SDASKK LGCVLMQ+G+V+AYASRQL
Sbjct: 785  WSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQL 844

Query: 421  KDYEKNYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQ 480
            K +E+NY  HDLELAAVVFALKIWRHYLYGE+ QI+TDHKSLKYFFTQK+LNMRQ+ WL+
Sbjct: 845  KSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLE 904

Query: 481  LVKNYDIDIQYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQL 540
            LVK+YD +I Y+  KANVV DALS+K +HS+AL  ++  +  D ERA IAV++  +  QL
Sbjct: 905  LVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQL 964

Query: 541  PRLMLQPTLRQRIIEAQARDSGL------------------------------------- 600
             +L +QPTLRQRII+AQ+ D  L                                     
Sbjct: 965  AQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAV 1024

Query: 601  -TRALNK------------------------------------------------RQRPA 620
             T  L++                                                RQ+PA
Sbjct: 1025 KTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPA 1084

[Close]

BLAST of CmaCh00G001860.1 vs. ExPASy TrEMBL
Match: A0A5A7V003 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1186G00140 PE=4 SV=1)

HSP 1 Score: 776.5 bits (2004), Expect = 8.0e-221
Identity = 421/817 (51.53%), Postives = 512/817 (62.67%), Query Frame = 0


Query: 1    MVTAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPS 60
            M++  +VK   I I+G  + V L+V+DM  +DVIL MDWLA NHASIDC ++EV F PPS
Sbjct: 216  MLSKEKVKTCQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 275

Query: 61   RTRFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDV 120
            R  F+F+G    ++P+VIS ++A KL+  G WAILA +   +E  V L+  P+V ++PDV
Sbjct: 276  RASFKFKGEGSRSLPQVISAIRASKLLSQGTWAILASVVDTREADVSLSSEPVVRDYPDV 335

Query: 121  FPEDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEEL------------------ 180
            FPE+LPG PP R+V+FAIELE GT PIS+A YRMAPAEL+EL                  
Sbjct: 336  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 395

Query: 181  -----------KDGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRS- 240
                       KDGSMRL +DY ELNK TVKNRYPLP I+DLFDQL+ AT+FSKIDLRS 
Sbjct: 396  PWGAPVLFVKKKDGSMRLCIDYTELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG 455

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 456  YHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFID 515

Query: 301  ---------------------------------------------GHVISVEGVSVDPAK 360
                                                         GHV+S  GVSVDPAK
Sbjct: 516  DILIYSKMEAEHEKHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAK 575

Query: 361  VEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASF 420
            +EA TGW RP+TV+EVRSFLGLAGYYR FV++FS+IATPL++LTRK   FVW++ CE S 
Sbjct: 576  IEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSL 635

Query: 421  RDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLV 480
            ++L ++L TA VLT+PDG+G++VI+SDAS K LGCVLMQ+G+V+AYASRQLK +E+NY  
Sbjct: 636  QNLKQKLVTAPVLTVPDGSGSFVIYSDASMKGLGCVLMQQGKVVAYASRQLKSHEQNYPT 695

Query: 481  HDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDI 540
            HDLELAAVVFALKIWRHYLYGE+ QI+TDHKSLKYFFTQK+LNMRQ+ WL+LVK+YD +I
Sbjct: 696  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEI 755

Query: 541  QYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLMLQPTL 600
             Y+  KANVV DALS+K +HS+AL  ++  +  D ERA IAV++  +  QL +L +QPTL
Sbjct: 756  LYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTL 815

Query: 601  RQRIIEAQARD------------------------------------------------- 620
            RQRII+AQ+ D                                                 
Sbjct: 816  RQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAIKTELLSEAH 875

[Close]

BLAST of CmaCh00G001860.1 vs. ExPASy TrEMBL
Match: A0A5D3BTN0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001560 PE=4 SV=1)

HSP 1 Score: 776.5 bits (2004), Expect = 8.0e-221
Identity = 427/840 (50.83%), Postives = 515/840 (61.31%), Query Frame = 0


Query: 1    MVTAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPS 60
            +++  ++K   + I+   L V L+V+DM  +DVIL MDWL+ NHA+IDC+ +EV+F PPS
Sbjct: 783  LLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANIDCYGKEVVFNPPS 842

Query: 61   RTRFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDV 120
               F+FRG  +  +PKVIS MKA KL+  G W ILA +  ++E  V L+  P+V E+PDV
Sbjct: 843  EASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDV 902

Query: 121  FPEDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEEL------------------ 180
            FP++LPG PP R+VDFAIELE GT PIS+A YRMAPAEL+EL                  
Sbjct: 903  FPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 962

Query: 181  -----------KDGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRS- 240
                       KDGSMRL +DYRELNK TVKNRYPLP I+DLFDQL+ AT+FSKIDLRS 
Sbjct: 963  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG 1022

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 1023 YHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFID 1082

Query: 301  ---------------------------------------------GHVISVEGVSVDPAK 360
                                                         GHV+S EGVSVDPAK
Sbjct: 1083 DILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAK 1142

Query: 361  VEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASF 420
            +EA T W RP+TV+E+RSFLGLAGYYR FV+DFS+IA+PL++LTRK T FVW+  CE SF
Sbjct: 1143 IEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 1202

Query: 421  RDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLV 480
            ++L ++L TA VLT+PDG+GN+VI+SDASKK LGCVLMQ+G+V+AYASRQLK +E+NY  
Sbjct: 1203 QELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT 1262

Query: 481  HDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDI 540
            HDLELAAVVFALKIWRHYLYGE+ QIYTDHKSLKYFFTQK+LNMRQ+ WL+LVK+YD +I
Sbjct: 1263 HDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEI 1322

Query: 541  QYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLMLQPTL 600
             Y+  KANVV DALS+K AHS+AL  K+  +  DFERA IAV++  + AQL +L +QPTL
Sbjct: 1323 LYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLTVQPTL 1382

Query: 601  RQRIIEAQ-----------------------ARDSGL---------------TRALNK-- 620
            RQ+II AQ                       + D GL               T  L +  
Sbjct: 1383 RQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDDGLMFEGRLCVPEDSAVKTELLTEAH 1442

[Close]

BLAST of CmaCh00G001860.1 vs. ExPASy TrEMBL
Match: A0A5D3C6W3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001930 PE=4 SV=1)

HSP 1 Score: 776.5 bits (2004), Expect = 8.0e-221
Identity = 427/840 (50.83%), Postives = 515/840 (61.31%), Query Frame = 0


Query: 1    MVTAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPS 60
            +++  ++K   + I+   L V L+V+DM  +DVIL MDWL+ NHA+IDC+ +EV+F PPS
Sbjct: 401  LLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANIDCYGKEVVFNPPS 460

Query: 61   RTRFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDV 120
               F+FRG  +  +PKVIS MKA KL+  G W ILA +  ++E  V L+  P+V E+PDV
Sbjct: 461  EASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDV 520

Query: 121  FPEDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEEL------------------ 180
            FP++LPG PP R+VDFAIELE GT PIS+A YRMAPAEL+EL                  
Sbjct: 521  FPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 580

Query: 181  -----------KDGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRS- 240
                       KDGSMRL +DYRELNK TVKNRYPLP I+DLFDQL+ AT+FSKIDLRS 
Sbjct: 581  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG 640

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 641  YHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFID 700

Query: 301  ---------------------------------------------GHVISVEGVSVDPAK 360
                                                         GHV+S EGVSVDPAK
Sbjct: 701  DILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAK 760

Query: 361  VEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASF 420
            +EA T W RP+TV+E+RSFLGLAGYYR FV+DFS+IA+PL++LTRK T FVW+  CE SF
Sbjct: 761  IEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 820

Query: 421  RDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLV 480
            ++L ++L TA VLT+PDG+GN+VI+SDASKK LGCVLMQ+G+V+AYASRQLK +E+NY  
Sbjct: 821  QELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT 880

Query: 481  HDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDI 540
            HDLELAAVVFALKIWRHYLYGE+ QIYTDHKSLKYFFTQK+LNMRQ+ WL+LVK+YD +I
Sbjct: 881  HDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEI 940

Query: 541  QYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLMLQPTL 600
             Y+  KANVV DALS+K AHS+AL  K+  +  DFERA IAV++  + AQL +L +QPTL
Sbjct: 941  LYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLTVQPTL 1000

Query: 601  RQRIIEAQ-----------------------ARDSGL---------------TRALNK-- 620
            RQ+II AQ                       + D GL               T  L +  
Sbjct: 1001 RQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDDGLMFEGRLCVPEDSAVKTELLTEAH 1060

[Close]

BLAST of CmaCh00G001860.1 vs. ExPASy TrEMBL
Match: A0A5A7V2A0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001000 PE=4 SV=1)

HSP 1 Score: 776.5 bits (2004), Expect = 8.0e-221
Identity = 427/840 (50.83%), Postives = 515/840 (61.31%), Query Frame = 0


Query: 1    MVTAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPS 60
            +++  ++K   + I+   L V L+V+DM  +DVIL MDWL+ NHA+IDC+ +EV+F PPS
Sbjct: 829  LLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANIDCYGKEVVFNPPS 888

Query: 61   RTRFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDV 120
               F+FRG  +  +PKVIS MKA KL+  G W ILA +  ++E  V L+  P+V E+PDV
Sbjct: 889  EASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDV 948

Query: 121  FPEDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEEL------------------ 180
            FP++LPG PP R+VDFAIELE GT PIS+A YRMAPAEL+EL                  
Sbjct: 949  FPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 1008

Query: 181  -----------KDGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRS- 240
                       KDGSMRL +DYRELNK TVKNRYPLP I+DLFDQL+ AT+FSKIDLRS 
Sbjct: 1009 PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG 1068

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 1069 YHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFID 1128

Query: 301  ---------------------------------------------GHVISVEGVSVDPAK 360
                                                         GHV+S EGVSVDPAK
Sbjct: 1129 DILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAK 1188

Query: 361  VEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASF 420
            +EA T W RP+TV+E+RSFLGLAGYYR FV+DFS+IA+PL++LTRK T FVW+  CE SF
Sbjct: 1189 IEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 1248

Query: 421  RDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLV 480
            ++L ++L TA VLT+PDG+GN+VI+SDASKK LGCVLMQ+G+V+AYASRQLK +E+NY  
Sbjct: 1249 QELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT 1308

Query: 481  HDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDI 540
            HDLELAAVVFALKIWRHYLYGE+ QIYTDHKSLKYFFTQK+LNMRQ+ WL+LVK+YD +I
Sbjct: 1309 HDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEI 1368

Query: 541  QYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLMLQPTL 600
             Y+  KANVV DALS+K AHS+AL  K+  +  DFERA IAV++  + AQL +L +QPTL
Sbjct: 1369 LYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLTVQPTL 1428

Query: 601  RQRIIEAQ-----------------------ARDSGL---------------TRALNK-- 620
            RQ+II AQ                       + D GL               T  L +  
Sbjct: 1429 RQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDDGLMFEGRLCVPEDSAVKTELLTEAH 1488

[Close]

BLAST of CmaCh00G001860.1 vs. NCBI nr
Match: KAA0051368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 783.1 bits (2021), Expect = 1.8e-222
Identity = 419/789 (53.11%), Postives = 514/789 (65.15%), Query Frame = 0


Query: 1    MVTAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPS 60
            +++  +VK   I I+G  + V L+V+DM  +DVIL MDWLA NHASIDC ++EV F PPS
Sbjct: 425  LLSREKVKACQIEIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 484

Query: 61   RTRFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDV 120
               F+F+G    ++P+VIS ++A KL+  G W ILA +   +E  V L+  P+V ++PDV
Sbjct: 485  MASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDV 544

Query: 121  FPEDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEEL-KDGSMRLFVDYRELNKR 180
            FPE+LPG PP R+V+FAIELE GT PIS+A YRMAPAEL+EL KDGSMRL +DYRELNK 
Sbjct: 545  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKKDGSMRLCIDYRELNKV 604

Query: 181  TVKNRYPLPHIEDLFDQLREATMFSKIDLRS----------------------------- 240
            TVKNRYPLP I+DLFDQL+ A +FSK DLRS                             
Sbjct: 605  TVKNRYPLPRIDDLFDQLQGAIVFSKFDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVM 664

Query: 241  ------------------------------------------------------GHVISV 300
                                                                  GHV+S 
Sbjct: 665  SFGLTNAPAVFMDLMNRVFRKFLDTFVIVFIDDILIYSKTEAEHEEHLRMVSFLGHVVSK 724

Query: 301  EGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFV 360
             GVSVDPAK+EA TGW RP+TV+EVRSFLGLAGYYR FV++FS+IATPL++LTRK   FV
Sbjct: 725  AGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 784

Query: 361  WTEECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQL 420
            W++ CE SF++L ++L TA VLT+PDG+G++VI+SDASKK LGCVLMQ+G+V+AYASRQL
Sbjct: 785  WSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQL 844

Query: 421  KDYEKNYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQ 480
            K +E+NY  HDLELAAVVFALKIWRHYLYGE+ QI+TDHKSLKYFFTQK+LNMRQ+ WL+
Sbjct: 845  KSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLE 904

Query: 481  LVKNYDIDIQYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQL 540
            LVK+YD +I Y+  KANVV DALS+K +HS+AL  ++  +  D ERA IAV++  +  QL
Sbjct: 905  LVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQL 964

Query: 541  PRLMLQPTLRQRIIEAQARDSGL------------------------------------- 600
             +L +QPTLRQRII+AQ+ D  L                                     
Sbjct: 965  AQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAV 1024

Query: 601  -TRALNK------------------------------------------------RQRPA 620
             T  L++                                                RQ+PA
Sbjct: 1025 KTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQKPA 1084

[Close]

BLAST of CmaCh00G001860.1 vs. NCBI nr
Match: TYK20443.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 776.5 bits (2004), Expect = 1.7e-220
Identity = 427/840 (50.83%), Postives = 515/840 (61.31%), Query Frame = 0


Query: 1    MVTAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPS 60
            +++  ++K   + I+   L V L+V+DM  +DVIL MDWL+ NHA+IDC+ +EV+F PPS
Sbjct: 782  LLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANIDCYGKEVVFNPPS 841

Query: 61   RTRFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDV 120
               F+FRG  +  +PKVIS MKA KL+  G W ILA +  ++E  V L+  P+V E+PDV
Sbjct: 842  EASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDV 901

Query: 121  FPEDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEEL------------------ 180
            FP++LPG PP R+VDFAIELE GT PIS+A YRMAPAEL+EL                  
Sbjct: 902  FPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 961

Query: 181  -----------KDGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRS- 240
                       KDGSMRL +DYRELNK TVKNRYPLP I+DLFDQL+ AT+FSKIDLRS 
Sbjct: 962  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG 1021

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 1022 YHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFID 1081

Query: 301  ---------------------------------------------GHVISVEGVSVDPAK 360
                                                         GHV+S EGVSVDPAK
Sbjct: 1082 DILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAK 1141

Query: 361  VEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASF 420
            +EA T W RP+TV+E+RSFLGLAGYYR FV+DFS+IA+PL++LTRK T FVW+  CE SF
Sbjct: 1142 IEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 1201

Query: 421  RDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLV 480
            ++L ++L TA VLT+PDG+GN+VI+SDASKK LGCVLMQ+G+V+AYASRQLK +E+NY  
Sbjct: 1202 QELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT 1261

Query: 481  HDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDI 540
            HDLELAAVVFALKIWRHYLYGE+ QIYTDHKSLKYFFTQK+LNMRQ+ WL+LVK+YD +I
Sbjct: 1262 HDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEI 1321

Query: 541  QYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLMLQPTL 600
             Y+  KANVV DALS+K AHS+AL  K+  +  DFERA IAV++  + AQL +L +QPTL
Sbjct: 1322 LYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLTVQPTL 1381

Query: 601  RQRIIEAQ-----------------------ARDSGL---------------TRALNK-- 620
            RQ+II AQ                       + D GL               T  L +  
Sbjct: 1382 RQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDDGLMFEGRLCVPEDSAVKTELLTEAH 1441

[Close]

BLAST of CmaCh00G001860.1 vs. NCBI nr
Match: TYK01576.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 776.5 bits (2004), Expect = 1.7e-220
Identity = 427/840 (50.83%), Postives = 515/840 (61.31%), Query Frame = 0


Query: 1    MVTAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPS 60
            +++  ++K   + I+   L V L+V+DM  +DVIL MDWL+ NHA+IDC+ +EV+F PPS
Sbjct: 783  LLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANIDCYGKEVVFNPPS 842

Query: 61   RTRFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDV 120
               F+FRG  +  +PKVIS MKA KL+  G W ILA +  ++E  V L+  P+V E+PDV
Sbjct: 843  EASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDV 902

Query: 121  FPEDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEEL------------------ 180
            FP++LPG PP R+VDFAIELE GT PIS+A YRMAPAEL+EL                  
Sbjct: 903  FPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 962

Query: 181  -----------KDGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRS- 240
                       KDGSMRL +DYRELNK TVKNRYPLP I+DLFDQL+ AT+FSKIDLRS 
Sbjct: 963  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG 1022

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 1023 YHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFID 1082

Query: 301  ---------------------------------------------GHVISVEGVSVDPAK 360
                                                         GHV+S EGVSVDPAK
Sbjct: 1083 DILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAK 1142

Query: 361  VEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASF 420
            +EA T W RP+TV+E+RSFLGLAGYYR FV+DFS+IA+PL++LTRK T FVW+  CE SF
Sbjct: 1143 IEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 1202

Query: 421  RDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLV 480
            ++L ++L TA VLT+PDG+GN+VI+SDASKK LGCVLMQ+G+V+AYASRQLK +E+NY  
Sbjct: 1203 QELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT 1262

Query: 481  HDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDI 540
            HDLELAAVVFALKIWRHYLYGE+ QIYTDHKSLKYFFTQK+LNMRQ+ WL+LVK+YD +I
Sbjct: 1263 HDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEI 1322

Query: 541  QYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLMLQPTL 600
             Y+  KANVV DALS+K AHS+AL  K+  +  DFERA IAV++  + AQL +L +QPTL
Sbjct: 1323 LYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLTVQPTL 1382

Query: 601  RQRIIEAQ-----------------------ARDSGL---------------TRALNK-- 620
            RQ+II AQ                       + D GL               T  L +  
Sbjct: 1383 RQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDDGLMFEGRLCVPEDSAVKTELLTEAH 1442

[Close]

BLAST of CmaCh00G001860.1 vs. NCBI nr
Match: KAA0059071.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 776.5 bits (2004), Expect = 1.7e-220
Identity = 421/817 (51.53%), Postives = 512/817 (62.67%), Query Frame = 0


Query: 1    MVTAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPS 60
            M++  +VK   I I+G  + V L+V+DM  +DVIL MDWLA NHASIDC ++EV F PPS
Sbjct: 216  MLSKEKVKTCQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPS 275

Query: 61   RTRFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDV 120
            R  F+F+G    ++P+VIS ++A KL+  G WAILA +   +E  V L+  P+V ++PDV
Sbjct: 276  RASFKFKGEGSRSLPQVISAIRASKLLSQGTWAILASVVDTREADVSLSSEPVVRDYPDV 335

Query: 121  FPEDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEEL------------------ 180
            FPE+LPG PP R+V+FAIELE GT PIS+A YRMAPAEL+EL                  
Sbjct: 336  FPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 395

Query: 181  -----------KDGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRS- 240
                       KDGSMRL +DY ELNK TVKNRYPLP I+DLFDQL+ AT+FSKIDLRS 
Sbjct: 396  PWGAPVLFVKKKDGSMRLCIDYTELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG 455

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 456  YHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFID 515

Query: 301  ---------------------------------------------GHVISVEGVSVDPAK 360
                                                         GHV+S  GVSVDPAK
Sbjct: 516  DILIYSKMEAEHEKHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAK 575

Query: 361  VEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASF 420
            +EA TGW RP+TV+EVRSFLGLAGYYR FV++FS+IATPL++LTRK   FVW++ CE S 
Sbjct: 576  IEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSL 635

Query: 421  RDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLV 480
            ++L ++L TA VLT+PDG+G++VI+SDAS K LGCVLMQ+G+V+AYASRQLK +E+NY  
Sbjct: 636  QNLKQKLVTAPVLTVPDGSGSFVIYSDASMKGLGCVLMQQGKVVAYASRQLKSHEQNYPT 695

Query: 481  HDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDI 540
            HDLELAAVVFALKIWRHYLYGE+ QI+TDHKSLKYFFTQK+LNMRQ+ WL+LVK+YD +I
Sbjct: 696  HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEI 755

Query: 541  QYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLMLQPTL 600
             Y+  KANVV DALS+K +HS+AL  ++  +  D ERA IAV++  +  QL +L +QPTL
Sbjct: 756  LYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTIQLAQLTVQPTL 815

Query: 601  RQRIIEAQARD------------------------------------------------- 620
            RQRII+AQ+ D                                                 
Sbjct: 816  RQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAIKTELLSEAH 875

[Close]

BLAST of CmaCh00G001860.1 vs. NCBI nr
Match: TYK06888.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 776.5 bits (2004), Expect = 1.7e-220
Identity = 427/840 (50.83%), Postives = 515/840 (61.31%), Query Frame = 0


Query: 1    MVTAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPS 60
            +++  ++K   + I+   L V L+V+DM  +DVIL MDWL+ NHA+IDC+ +EV+F PPS
Sbjct: 401  LLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANIDCYGKEVVFNPPS 460

Query: 61   RTRFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDV 120
               F+FRG  +  +PKVIS MKA KL+  G W ILA +  ++E  V L+  P+V E+PDV
Sbjct: 461  EASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDV 520

Query: 121  FPEDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEEL------------------ 180
            FP++LPG PP R+VDFAIELE GT PIS+A YRMAPAEL+EL                  
Sbjct: 521  FPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVS 580

Query: 181  -----------KDGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRS- 240
                       KDGSMRL +DYRELNK TVKNRYPLP I+DLFDQL+ AT+FSKIDLRS 
Sbjct: 581  PWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSG 640

Query: 241  ------------------------------------------------------------ 300
                                                                        
Sbjct: 641  YHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFID 700

Query: 301  ---------------------------------------------GHVISVEGVSVDPAK 360
                                                         GHV+S EGVSVDPAK
Sbjct: 701  DILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAK 760

Query: 361  VEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASF 420
            +EA T W RP+TV+E+RSFLGLAGYYR FV+DFS+IA+PL++LTRK T FVW+  CE SF
Sbjct: 761  IEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACERSF 820

Query: 421  RDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLV 480
            ++L ++L TA VLT+PDG+GN+VI+SDASKK LGCVLMQ+G+V+AYASRQLK +E+NY  
Sbjct: 821  QELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPT 880

Query: 481  HDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDI 540
            HDLELAAVVFALKIWRHYLYGE+ QIYTDHKSLKYFFTQK+LNMRQ+ WL+LVK+YD +I
Sbjct: 881  HDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEI 940

Query: 541  QYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLMLQPTL 600
             Y+  KANVV DALS+K AHS+AL  K+  +  DFERA IAV++  + AQL +L +QPTL
Sbjct: 941  LYHPGKANVVADALSRKVAHSAALITKQTPLLRDFERAEIAVSVGEVTAQLAQLTVQPTL 1000

Query: 601  RQRIIEAQ-----------------------ARDSGL---------------TRALNK-- 620
            RQ+II AQ                       + D GL               T  L +  
Sbjct: 1001 RQKIIAAQLDDPYLAEKRRVVETEQGEGFSISSDDGLMFEGRLCVPEDSAVKTELLTEAH 1060

[Close]

BLAST of CmaCh00G001860.1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 4.6e-19
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 212 HVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRK 271
           H+IS EGVS DPAK+EA  GW  P   TE+R FLGL GYYR FV+++ KI  PL+ L +K
Sbjct: 37  HIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK 96

Query: 272 VTAFVWTEECEASFRDLDERLETALVLTMPD 303
             +  WTE    +F+ L   + T  VL +PD
Sbjct: 97  -NSLKWTEMAALAFKALKGAVTTLPVLALPD 126

The following BLAST results are available for this feature:

BLAST of CmaCh00G001860.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	4.6e-48	26.34	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	6.0e-48	26.34	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	6.2e-45	24.34	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT42	6.2e-45	24.34	Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT43	6.2e-45	24.34	Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmaCh00G001860.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U7V9	8.6e-223	53.11	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7V003	8.0e-221	51.53	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5D3BTN0	8.0e-221	50.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5D3C6W3	8.0e-221	50.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13...	[more]
A0A5A7V2A0	8.0e-221	50.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]

BLAST of CmaCh00G001860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051368.1	1.8e-222	53.11	pol protein [Cucumis melo var. makuwa]	[more]
TYK20443.1	1.7e-220	50.83	pol protein [Cucumis melo var. makuwa]	[more]
TYK01576.1	1.7e-220	50.83	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059071.1	1.7e-220	51.53	pol protein [Cucumis melo var. makuwa]	[more]
TYK06888.1	1.7e-220	50.83	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of CmaCh00G001860.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	4.6e-19	49.45	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 2..66 e-value: 1.2E-8 score: 36.8
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 306..401 e-value: 3.1E-30 score: 104.6
None	No IPR available	PFAM	PF08284	RVP_2	coord: 8..59 e-value: 2.1E-12 score: 47.0
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 162..216 e-value: 8.4E-10 score: 40.4
None	No IPR available	PANTHER	PTHR24559:SF383	DNA/RNA POLYMERASES SUPERFAMILY PROTEIN	coord: 216..301
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 305..506
None	No IPR available	PANTHER	PTHR24559:SF383	DNA/RNA POLYMERASES SUPERFAMILY PROTEIN	coord: 21..173 coord: 305..506
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 21..173 coord: 216..301
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 308..423 e-value: 2.78389E-46 score: 157.269
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 224..316 e-value: 3.9E-26 score: 92.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 492..621 e-value: 6.5E-30 score: 105.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 495..621 score: 17.731518
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 496..619
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 113..407

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh00G001860	CmaCh00G001860	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001860.1:exon:2582	CmaCh00G001860.1:exon:2582	exon
CmaCh00G001860.1:exon:2583	CmaCh00G001860.1:exon:2583	exon
CmaCh00G001860.1:exon:2584	CmaCh00G001860.1:exon:2584	exon
CmaCh00G001860.1:exon:2585	CmaCh00G001860.1:exon:2585	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001860.1:cds	CmaCh00G001860.1:cds	CDS
CmaCh00G001860.1:cds	CmaCh00G001860.1:cds_2	CDS
CmaCh00G001860.1:cds	CmaCh00G001860.1:cds_3	CDS
CmaCh00G001860.1:cds	CmaCh00G001860.1:cds_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001860.1	CmaCh00G001860.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity