CmUC10G198010.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC10G198010.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	disease resistance protein RGA2-like
Location	CmU531Chr10: 29806448 .. 29806906 (+)
Sequence length	459
RNA-Seq Expression	CmUC10G198010.1
Synteny	CmUC10G198010.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTATACCATGTTGAGCCTTAAAGCAATTCTTAAGGATGCTGAGAAGGAAGAATGTAGTCATTATCTATGTAGTTGGCTAAAGGAGCTTCAAAATGTATTTACTCAAATTGAGGGATTCATATATGAATTCAACGGGAAAGTCTATAAACAAGAGGCTATTGGAAAACAGGTATTTGTTCCTTCATTGTACTCCAGTCGAATTGAGCATACTCAAAAAATGAAGAAACTATGCGACGATTTGGATGAAATTGCATCCCAAATGTATGGATTCAATCTAACAAATAAGGAGACAACAGACTCCTTTTTTAGTGCTACTGAAGTTTCAGCAAGACTCATGAAACCAAGTTGGCAATTGCTTTACCCGTTGACTAATGCTCGACAGGTATTTCATGGTGGCAGATTTGATGACTTTCTGGATCATTTCAAAACTCTACTCATGGGCTCTTCCACATAG

mRNA sequence

ATGGAGTATACCATGTTGAGCCTTAAAGCAATTCTTAAGGATGCTGAGAAGGAAGAATGTAGTCATTATCTATGTAGTTGGCTAAAGGAGCTTCAAAATGTATTTACTCAAATTGAGGGATTCATATATGAATTCAACGGGAAAGTCTATAAACAAGAGGCTATTGGAAAACAGGTATTTGTTCCTTCATTGTACTCCAGTCGAATTGAGCATACTCAAAAAATGAAGAAACTATGCGACGATTTGGATGAAATTGCATCCCAAATGTATGGATTCAATCTAACAAATAAGGAGACAACAGACTCCTTTTTTAGTGCTACTGAAGTTTCAGCAAGACTCATGAAACCAAGTTGGCAATTGCTTTACCCGTTGACTAATGCTCGACAGGTATTTCATGGTGGCAGATTTGATGACTTTCTGGATCATTTCAAAACTCTACTCATGGGCTCTTCCACATAG

Coding sequence (CDS)

ATGGAGTATACCATGTTGAGCCTTAAAGCAATTCTTAAGGATGCTGAGAAGGAAGAATGTAGTCATTATCTATGTAGTTGGCTAAAGGAGCTTCAAAATGTATTTACTCAAATTGAGGGATTCATATATGAATTCAACGGGAAAGTCTATAAACAAGAGGCTATTGGAAAACAGGTATTTGTTCCTTCATTGTACTCCAGTCGAATTGAGCATACTCAAAAAATGAAGAAACTATGCGACGATTTGGATGAAATTGCATCCCAAATGTATGGATTCAATCTAACAAATAAGGAGACAACAGACTCCTTTTTTAGTGCTACTGAAGTTTCAGCAAGACTCATGAAACCAAGTTGGCAATTGCTTTACCCGTTGACTAATGCTCGACAGGTATTTCATGGTGGCAGATTTGATGACTTTCTGGATCATTTCAAAACTCTACTCATGGGCTCTTCCACATAG

Protein sequence

MEYTMLSLKAILKDAEKEECSHYLCSWLKELQNVFTQIEGFIYEFNGKVYKQEAIGKQVFVPSLYSSRIEHTQKMKKLCDDLDEIASQMYGFNLTNKETTDSFFSATEVSARLMKPSWQLLYPLTNARQVFHGGRFDDFLDHFKTLLMGSST

Homology

[Close]

BLAST of CmUC10G198010.1 vs. NCBI nr
Match: XP_008443166.1 (PREDICTED: putative disease resistance protein RGA4 [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 3.5e-55
Identity = 113/149 (75.84%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 1   MEYTMLSLKAILKDAEKEECSHYLCSWLKELQNVFTQIEGFIYEFNGKVYKQEAIGKQVF 60
           M+YTMLSLK IL DAEKEE SH+L  WL+ELQNVF+QIEG +YEFNGKV KQEA GK VF
Sbjct: 26  MQYTMLSLKTILMDAEKEEYSHHLNDWLQELQNVFSQIEGLLYEFNGKVKKQEATGKWVF 85

Query: 61  VPSLYSSRIEHTQKMKKLCDDLDEIASQMYGFNLTNKETTDSFFSATEVSARLMKPSWQL 120
           V S  SSRIE T+KM KLCDDLDEIASQMY FNLTN ETT SF SATEVS RLMKPSWQL
Sbjct: 86  VLSFNSSRIEQTKKMMKLCDDLDEIASQMYDFNLTNMETTHSFLSATEVSTRLMKPSWQL 145

Query: 121 LYPLTNARQVFHGGRFDDFLDHFKTLLMG 150
           LYPLTNA +VFH  R+ +FLDHFK   +G
Sbjct: 146 LYPLTNAPKVFHDKRYSNFLDHFKKSTLG 174

[Close]

BLAST of CmUC10G198010.1 vs. NCBI nr
Match: KAA0053942.1 (putative disease resistance protein RGA4 [Cucumis melo var. makuwa] >TYK25462.1 putative disease resistance protein RGA4 [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 3.5e-55
Identity = 113/149 (75.84%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 1   MEYTMLSLKAILKDAEKEECSHYLCSWLKELQNVFTQIEGFIYEFNGKVYKQEAIGKQVF 60
           M+YTMLSLK IL DAEKEE SH+L  WL+ELQNVF+QIEG +YEFNGKV KQEA GK VF
Sbjct: 1   MQYTMLSLKTILMDAEKEEYSHHLNDWLQELQNVFSQIEGLLYEFNGKVKKQEATGKWVF 60

Query: 61  VPSLYSSRIEHTQKMKKLCDDLDEIASQMYGFNLTNKETTDSFFSATEVSARLMKPSWQL 120
           V S  SSRIE T+KM KLCDDLDEIASQMY FNLTN ETT SF SATEVS RLMKPSWQL
Sbjct: 61  VLSFNSSRIEQTKKMMKLCDDLDEIASQMYDFNLTNMETTHSFLSATEVSTRLMKPSWQL 120

Query: 121 LYPLTNARQVFHGGRFDDFLDHFKTLLMG 150
           LYPLTNA +VFH  R+ +FLDHFK   +G
Sbjct: 121 LYPLTNAPKVFHDKRYSNFLDHFKKSTLG 149

[Close]

BLAST of CmUC10G198010.1 vs. NCBI nr
Match: XP_004136756.2 (putative disease resistance protein RGA4 [Cucumis sativus] >KAE8651158.1 hypothetical protein Csa_000980 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 2.7e-47
Identity = 101/144 (70.14%), Postives = 114/144 (79.17%), Query Frame = 0


Query: 1   MEYTMLSLKAILKDAEKEECSHYLCSWLKELQNVFTQIEGFIYEFNGKVYKQEAIGKQVF 60
           M+YTMLSLK ILKDAEKEE  H L  WL++LQ+VF QIE  +YE N +V KQEA GK VF
Sbjct: 57  MQYTMLSLKTILKDAEKEEYRHCLNDWLQKLQSVFLQIEELLYESNREVKKQEATGKWVF 116

Query: 61  VPSLYSSRIEHTQKMKKLCDDLDEIASQMYGFNLTNKETTDSFFSATEVSARLMKPSWQL 120
           +PS   S+I+ T+KM KLCDDLDEIAS MYGFNLTN ETT SF SATEVS RLMKPSWQL
Sbjct: 117 LPSFNFSQIDQTKKMMKLCDDLDEIASHMYGFNLTNMETTHSFLSATEVSTRLMKPSWQL 176

Query: 121 LYPLTNARQVFHGGRFDDFLDHFK 145
           LY LTNA +VF   R+ +FLDHFK
Sbjct: 177 LYSLTNAPKVFQDKRYHNFLDHFK 200

[Close]

BLAST of CmUC10G198010.1 vs. NCBI nr
Match: XP_004136757.1 (putative disease resistance protein RGA3 [Cucumis sativus] >KGN59374.1 hypothetical protein Csa_002388 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.4e-33
Identity = 87/158 (55.06%), Postives = 111/158 (70.25%), Query Frame = 0


Query: 1   MEYTMLSLKAILKDA-EKEECSHYLCSWLKELQNVFTQIEGFIYEFNGKVYKQEAIGKQV 60
           +EYTMLSLK+IL DA EK+E S  L +WL+ELQNVF+QIEGFI E   + Y  E IGKQV
Sbjct: 26  IEYTMLSLKSILMDAEEKQEQSRGLQNWLEELQNVFSQIEGFIDEHKEEAY--EGIGKQV 85

Query: 61  FVP-SLYSSRIEHTQKMKKLCDDLDEIASQMYGFNLTNK-------ETTDSFFSATEVSA 120
             P S  S++I  T KM+KL D L+E+A++MY FNLT +       ETT+SF +ATEVS 
Sbjct: 86  LAPFSCSSNQIARTWKMEKLFDHLNEVAAKMYEFNLTERHTGAIKTETTNSFLTATEVST 145

Query: 121 RLMKPSWQLLYPLTNARQVFHGGRFDDFLDHFKTLLMG 150
           RLMKPSW++LYPLTNA + +   R+   L+ FK   +G
Sbjct: 146 RLMKPSWKVLYPLTNAPKFYQDERYRKILNDFKNPTLG 181

[Close]

BLAST of CmUC10G198010.1 vs. NCBI nr
Match: XP_016899652.1 (PREDICTED: putative disease resistance protein RGA4 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-32
Identity = 84/158 (53.16%), Postives = 108/158 (68.35%), Query Frame = 0


Query: 1   MEYTMLSLKAILKDA-EKEECSHYLCSWLKELQNVFTQIEGFIYEFNGKVYKQEAIGKQV 60
           +EYTMLSLK+IL DA EK+E S +L +WLKELQNVF QIEGFI E   +VYK E IGKQV
Sbjct: 26  IEYTMLSLKSILMDAEEKQEHSRHLRNWLKELQNVFFQIEGFIDELKEEVYKTEGIGKQV 85

Query: 61  FVPSLYS-SRIEHTQKMKKLCDDLDEIASQMYGFNLTNK-------ETTDSFFSATEVSA 120
             P  +S  +   TQKM+KL D LD + ++MY F+L  +       ETTDSF +ATEVS 
Sbjct: 86  LAPFSFSICQRARTQKMEKLFDHLDAVVAKMYEFDLKERHTGAIKMETTDSFLTATEVST 145

Query: 121 RLMKPSWQLLYPLTNARQVFHGGRFDDFLDHFKTLLMG 150
            LMKPSW++LYP T+A + +   R+ + L+ FK   +G
Sbjct: 146 SLMKPSWKVLYPSTSAPKSYQHERYREILNDFKESTLG 183

[Close]

BLAST of CmUC10G198010.1 vs. ExPASy TrEMBL
Match: A0A5A7UDS9 (Putative disease resistance protein RGA4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006080 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.7e-55
Identity = 113/149 (75.84%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 1   MEYTMLSLKAILKDAEKEECSHYLCSWLKELQNVFTQIEGFIYEFNGKVYKQEAIGKQVF 60
           M+YTMLSLK IL DAEKEE SH+L  WL+ELQNVF+QIEG +YEFNGKV KQEA GK VF
Sbjct: 1   MQYTMLSLKTILMDAEKEEYSHHLNDWLQELQNVFSQIEGLLYEFNGKVKKQEATGKWVF 60

Query: 61  VPSLYSSRIEHTQKMKKLCDDLDEIASQMYGFNLTNKETTDSFFSATEVSARLMKPSWQL 120
           V S  SSRIE T+KM KLCDDLDEIASQMY FNLTN ETT SF SATEVS RLMKPSWQL
Sbjct: 61  VLSFNSSRIEQTKKMMKLCDDLDEIASQMYDFNLTNMETTHSFLSATEVSTRLMKPSWQL 120

Query: 121 LYPLTNARQVFHGGRFDDFLDHFKTLLMG 150
           LYPLTNA +VFH  R+ +FLDHFK   +G
Sbjct: 121 LYPLTNAPKVFHDKRYSNFLDHFKKSTLG 149

[Close]

BLAST of CmUC10G198010.1 vs. ExPASy TrEMBL
Match: A0A1S3B7G0 (putative disease resistance protein RGA4 OS=Cucumis melo OX=3656 GN=LOC103486834 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.7e-55
Identity = 113/149 (75.84%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 1   MEYTMLSLKAILKDAEKEECSHYLCSWLKELQNVFTQIEGFIYEFNGKVYKQEAIGKQVF 60
           M+YTMLSLK IL DAEKEE SH+L  WL+ELQNVF+QIEG +YEFNGKV KQEA GK VF
Sbjct: 26  MQYTMLSLKTILMDAEKEEYSHHLNDWLQELQNVFSQIEGLLYEFNGKVKKQEATGKWVF 85

Query: 61  VPSLYSSRIEHTQKMKKLCDDLDEIASQMYGFNLTNKETTDSFFSATEVSARLMKPSWQL 120
           V S  SSRIE T+KM KLCDDLDEIASQMY FNLTN ETT SF SATEVS RLMKPSWQL
Sbjct: 86  VLSFNSSRIEQTKKMMKLCDDLDEIASQMYDFNLTNMETTHSFLSATEVSTRLMKPSWQL 145

Query: 121 LYPLTNARQVFHGGRFDDFLDHFKTLLMG 150
           LYPLTNA +VFH  R+ +FLDHFK   +G
Sbjct: 146 LYPLTNAPKVFHDKRYSNFLDHFKKSTLG 174

[Close]

BLAST of CmUC10G198010.1 vs. ExPASy TrEMBL
Match: A0A0A0LF99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814390 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.3e-47
Identity = 101/144 (70.14%), Postives = 114/144 (79.17%), Query Frame = 0


Query: 1   MEYTMLSLKAILKDAEKEECSHYLCSWLKELQNVFTQIEGFIYEFNGKVYKQEAIGKQVF 60
           M+YTMLSLK ILKDAEKEE  H L  WL++LQ+VF QIE  +YE N +V KQEA GK VF
Sbjct: 26  MQYTMLSLKTILKDAEKEEYRHCLNDWLQKLQSVFLQIEELLYESNREVKKQEATGKWVF 85

Query: 61  VPSLYSSRIEHTQKMKKLCDDLDEIASQMYGFNLTNKETTDSFFSATEVSARLMKPSWQL 120
           +PS   S+I+ T+KM KLCDDLDEIAS MYGFNLTN ETT SF SATEVS RLMKPSWQL
Sbjct: 86  LPSFNFSQIDQTKKMMKLCDDLDEIASHMYGFNLTNMETTHSFLSATEVSTRLMKPSWQL 145

Query: 121 LYPLTNARQVFHGGRFDDFLDHFK 145
           LY LTNA +VF   R+ +FLDHFK
Sbjct: 146 LYSLTNAPKVFQDKRYHNFLDHFK 169

[Close]

BLAST of CmUC10G198010.1 vs. ExPASy TrEMBL
Match: A0A0A0LEM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814400 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 4.1e-33
Identity = 87/158 (55.06%), Postives = 111/158 (70.25%), Query Frame = 0


Query: 1   MEYTMLSLKAILKDA-EKEECSHYLCSWLKELQNVFTQIEGFIYEFNGKVYKQEAIGKQV 60
           +EYTMLSLK+IL DA EK+E S  L +WL+ELQNVF+QIEGFI E   + Y  E IGKQV
Sbjct: 26  IEYTMLSLKSILMDAEEKQEQSRGLQNWLEELQNVFSQIEGFIDEHKEEAY--EGIGKQV 85

Query: 61  FVP-SLYSSRIEHTQKMKKLCDDLDEIASQMYGFNLTNK-------ETTDSFFSATEVSA 120
             P S  S++I  T KM+KL D L+E+A++MY FNLT +       ETT+SF +ATEVS 
Sbjct: 86  LAPFSCSSNQIARTWKMEKLFDHLNEVAAKMYEFNLTERHTGAIKTETTNSFLTATEVST 145

Query: 121 RLMKPSWQLLYPLTNARQVFHGGRFDDFLDHFKTLLMG 150
           RLMKPSW++LYPLTNA + +   R+   L+ FK   +G
Sbjct: 146 RLMKPSWKVLYPLTNAPKFYQDERYRKILNDFKNPTLG 181

[Close]

BLAST of CmUC10G198010.1 vs. ExPASy TrEMBL
Match: A0A1S4DUI6 (putative disease resistance protein RGA4 OS=Cucumis melo OX=3656 GN=LOC107990605 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.0e-33
Identity = 84/158 (53.16%), Postives = 108/158 (68.35%), Query Frame = 0


Query: 1   MEYTMLSLKAILKDA-EKEECSHYLCSWLKELQNVFTQIEGFIYEFNGKVYKQEAIGKQV 60
           +EYTMLSLK+IL DA EK+E S +L +WLKELQNVF QIEGFI E   +VYK E IGKQV
Sbjct: 26  IEYTMLSLKSILMDAEEKQEHSRHLRNWLKELQNVFFQIEGFIDELKEEVYKTEGIGKQV 85

Query: 61  FVPSLYS-SRIEHTQKMKKLCDDLDEIASQMYGFNLTNK-------ETTDSFFSATEVSA 120
             P  +S  +   TQKM+KL D LD + ++MY F+L  +       ETTDSF +ATEVS 
Sbjct: 86  LAPFSFSICQRARTQKMEKLFDHLDAVVAKMYEFDLKERHTGAIKMETTDSFLTATEVST 145

Query: 121 RLMKPSWQLLYPLTNARQVFHGGRFDDFLDHFKTLLMG 150
            LMKPSW++LYP T+A + +   R+ + L+ FK   +G
Sbjct: 146 SLMKPSWKVLYPSTSAPKSYQHERYREILNDFKESTLG 183

The following BLAST results are available for this feature:

BLAST of CmUC10G198010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443166.1	3.5e-55	75.84	PREDICTED: putative disease resistance protein RGA4 [Cucumis melo]	[more]
KAA0053942.1	3.5e-55	75.84	putative disease resistance protein RGA4 [Cucumis melo var. makuwa] >TYK25462.1 ...	[more]
XP_004136756.2	2.7e-47	70.14	putative disease resistance protein RGA4 [Cucumis sativus] >KAE8651158.1 hypothe...	[more]
XP_004136757.1	8.4e-33	55.06	putative disease resistance protein RGA3 [Cucumis sativus] >KGN59374.1 hypotheti...	[more]
XP_016899652.1	1.9e-32	53.16	PREDICTED: putative disease resistance protein RGA4 [Cucumis melo]	[more]

BLAST of CmUC10G198010.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC10G198010.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UDS9	1.7e-55	75.84	Putative disease resistance protein RGA4 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3B7G0	1.7e-55	75.84	putative disease resistance protein RGA4 OS=Cucumis melo OX=3656 GN=LOC103486834...	[more]
A0A0A0LF99	1.3e-47	70.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814390 PE=4 SV=1	[more]
A0A0A0LEM8	4.1e-33	55.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814400 PE=4 SV=1	[more]
A0A1S4DUI6	9.0e-33	53.16	putative disease resistance protein RGA4 OS=Cucumis melo OX=3656 GN=LOC107990605...	[more]

BLAST of CmUC10G198010.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC10G198010	CmUC10G198010	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G198010.1-exon	CmUC10G198010.1-exon-CmU531Chr10:29806448..29806906	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC10G198010.1-cds	CmUC10G198010.1-cds-CmU531Chr10:29806448..29806906	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC10G198010.1	CmUC10G198010.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
molecular_function	GO:0043531	ADP binding