CmUC10G196930.1 (mRNA) Watermelon (USVL531) v1

Overview
NameCmUC10G196930.1
TypemRNA
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptiontRNA_int_end_N2 domain-containing protein
LocationCmU531Chr10: 28598891 .. 28602028 (+)
Sequence length1557
RNA-Seq ExpressionCmUC10G196930.1
SyntenyCmUC10G196930.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTTCTACCTCCTCTCACCGCAGTTCCGCACACATCTATAGCAGCCATTCCACTTTTCCCCATTATATTCCAATTGCAGCTGCAACTCTCTCCGCCGGCACACCGCCGGTGACGCAACCACACCTGCAGACGTTTATCACTTTTTCTTTCTTTTCTCACTCTCTACTGCGCCGTACGTCGCCCGTTGCTCCCGTATTCTGTTACTATCGGTGACTCTACACTCGGTTTATCGCAACCCTCCATTTGCTCGTATGTGAGTTCTCTAAAATTTTCCCCCCCTTCAGTTTAATCAATTCCAGAACAGGGTAAACTGGAATGCAGTCAAGTTTGATCTAAAATCTTGCCAAATCGGAAATGTTTGTGTAATCCAGAATTCCCTCGATTCATTTGTAATTTCTTTTTCTTTTCGTAGTTTGTGGTAGGCAGTTTTCATGATTCAAATCTCTGAAAGCCTTCCATCTTCTTATTCTAGAATAAAAAAGAGTAGGTTTTTGTGTTGTTCAATAAACTGTTACCAGATATCTCAGAATTAGGAATCACGTCACATTAGTTTTGGGCCGTTATTTCTCCATGTTTTGTACTTAGTTTAGTGCCATGTCCGTTCCCTGAACGAGGAGTGTTGATATTTGATTCGGAGGTTTCTGATGGAGGCTACGGTTTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGACGACAATTACGCGCAAGACATAAAAGATGAAGAAGAATGTCTCTGCGCATCTGGGTACTTGCGCAAGTTGCAATTCAGGTTGAGAACTCAAAGAATTTACACTGCTCCGAATCCTTCAATGGTATTACCCGACTGCTTATTTTTAAGTGTTTGTTTCAATATTTTATCTGTCTCTCTAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGCAGCCTTTGGACGACAATTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAGGTTAAATTATGATTTTATTATGGTTTTTTTTATCCCTATTGTTTTTCATATTGGCCACTTCTCTTTCACATTGTCTTAACTTAATTTGATCACTTTAAAGTAGTAGGGTAATCTCATGAAAAAGAAAAGAAGTTGGAAGTGTTTCCAAGCCAAGGCCAGGAAATGGCCTATGAGAGCCGCATTAGGTGCTTCTTGGCAATTACCTTGGTCGCCTCTTGGTCAGTTTTTTATTGCTTTTTGGTTGTCTTTGGGGCTGTATTTTGAACGTTACATTTTGAATAAAGGGAAGGAATTCAAACTTAAAATATATAAGAAGAAATACTAGTAGCCTTTTGTGTCTTAGTAAAAGTAGGAAGTCATCATTTTTTAAATTCATTTTTAACTGTAGTTTTCTTCCTATCATTATCTTTTGGAAATAAGTAAGCTTGCTTGTGTCCAACTGTATAATTCATTTTATGTATCACTTATTCTTCTTTACTATTTCCAATATATTCTAGTCTATTTACAATAAATATGCACATCTATTGTTTTGCATTCTCTTGGGCAATGTTTTTTTTAAATATTTTTTTTGTGTCTCTTTTCTTAGGAAAGTTAGAAGCGTGTTGCCTTAAAGTGTGTCTTGTACTTTGTAAATGTTGATTGTAATATGAACTTTGGCTCTAAAGTAGAGTTGTACTAATTAAAGCAGAAAAATATTCTCTTTTTAATTTTTTAATTTTATAAATAGAGATATTAAGGTTCATAATCTCTTTTGAGACATTCGGATGATAATATTTATGTACACTATCAAATTTTCTTTTCTATATTTTCAGATTTCTTATTGAAGTCGGGGCCTTACATCTTTTGGATCATGATAATTCAAGTCTTTCCTTGAAAGATGTATATAAGAAGGTAGCCGAAGGAAAAAATGGGTATCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAGTCTCTTGGTTTTACTGTTGGAAAGCATAAAGTTCCCTGGTCTCTGAAGAGTGTTAGGAATGGCAGTGACATTTCATCTCCAAGTTCTATTGAAAACAAAGGAGCATCAGATGACAAATCAGAAGATGAGAGGTCGATCTTTGAACTATTAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTTATGTTTTTCTTCCACATAACAAGTTTAGAAAGTCTTCTCTTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGTAAGTTCACTTGTTATAATAAAATCCATGCAACTTCCTTCCTAGTCTGTGCCTGGCTAGGGTTTTTTATTTTCAGTTTTATTTTTAACTACTTGGAAAGGCATAATTTGCACCTCACCTGACTTTTTAATAGTTTTCTTAATCTAAACAAGTTCAGTATTCTCAACACCAGCCCCAACTAGAGGACACGTGTTGACTGATCCTAAGATCGTGTGCACTATTTCTAGTGTTCAAAATTTTGTAAACTACACTTAGCGTGCCTTTTGGAAAAGGTGTTTTTCAAGCGAGCACATATGATGGAAGCAGTTTTGGAAGAAAATTAGTTAAATGGTTCCTCTGTAAGCACTCTATGTACTTTTTAGTCAAATGCTTTTAGTTGGTCGAAAACACTTTTTACCATAACATTGTAATCCAAATCCTGCCCATCTCTAAATAAATACTTTCAGTCATCCACAAGGACTTTAAAGGCATGTTAAACACACTTGGATTAGTACTCAATTCTATGGTTGTGAATTGTTTGCCCAATGTATCAATTTCATTTTTAGCCATTCTTGTAGTAATAGGCTTCAACGTCTATCGTTTCTTTCTTCTGGAAAATTTTATACACTACTTTTGAATTTATCTTATCTTTTAATTCCTGTGATGTAAATTGTTTCTTTTATAGGGTATATCCACCTTCAAAAAAAGATATTGAAGTTCTTGAGAGAACATCCAGAGGCATTCCGATGAAATATTGTTATGTTGAACATGGACGTGTCTGTTTATTTTCATTTGATAATGTGGAGCTCCCCATCTTACCTTGACATTCTTGTGGAGCTCTGCTATTTAATTTTTGGTATGTTATTTGAAAATTCTATTTTATGTTAAAATGAATCCAGAGAAAGAGTGTTTGGTGTGGGGGTAAATTGTAAGTTGA

mRNA sequence

TTATTTCTACCTCCTCTCACCGCAGTTCCGCACACATCTATAGCAGCCATTCCACTTTTCCCCATTATATTCCAATTGCAGCTGCAACTCTCTCCGCCGGCACACCGCCGGTGACGCAACCACACCTGCAGACGTTTATCACTTTTTCTTTCTTTTCTCACTCTCTACTGCGCCGTACGTCGCCCGTTGCTCCCGTATTCTGTTACTATCGGTGACTCTACACTCGGTTTATCGCAACCCTCCATTTGCTCGTATGTGAGTTCTCTAAAATTTTCCCCCCCTTCAGTTTAATCAATTCCAGAACAGGGTAAACTGGAATGCAGTCAAGTTTGATCTAAAATCTTGCCAAATCGGAAATGTTTGTGTAATCCAGAATTCCCTCGATTCATTTGTAATTTCTTTTTCTTTTCGTAGTTTGTGGTAGGCAGTTTTCATGATTCAAATCTCTGAAAGCCTTCCATCTTCTTATTCTAGAATAAAAAAGAGTAGGTTTTTGTGTTGTTCAATAAACTGTTACCAGATATCTCAGAATTAGGAATCACGTCACATTAGTTTTGGGCCGTTATTTCTCCATGTTTTGTACTTAGTTTAGTGCCATGTCCGTTCCCTGAACGAGGAGTGTTGATATTTGATTCGGAGGTTTCTGATGGAGGCTACGGTTTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGACGACAATTACGCGCAAGACATAAAAGATGAAGAAGAATGTCTCTGCGCATCTGGGTACTTGCGCAAGTTGCAATTCAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGCAGCCTTTGGACGACAATTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTCGGGGCCTTACATCTTTTGGATCATGATAATTCAAGTCTTTCCTTGAAAGATGTATATAAGAAGGTAGCCGAAGGAAAAAATGGGTATCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAGTCTCTTGGTTTTACTGTTGGAAAGCATAAAGTTCCCTGGTCTCTGAAGAGTGTTAGGAATGGCAGTGACATTTCATCTCCAAGTTCTATTGAAAACAAAGGAGCATCAGATGACAAATCAGAAGATGAGAGGTCGATCTTTGAACTATTAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTTATGTTTTTCTTCCACATAACAAGTTTAGAAAGTCTTCTCTTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGGTATATCCACCTTCAAAAAAAGATATTGAAGTTCTTGAGAGAACATCCAGAGGCATTCCGATGAAATATTGTTATGTTGAACATGGACGTGTCTGTTTATTTTCATTTGATAATGTGGAGCTCCCCATCTTACCTTGACATTCTTGTGGAGCTCTGCTATTTAATTTTTGGTATGTTATTTGAAAATTCTATTTTATGTTAAAATGAATCCAGAGAAAGAGTGTTTGGTGTGGGGGTAAATTGTAAGTTGA

Coding sequence (CDS)

ATGGAGGCTACGGTTTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGACGACAATTACGCGCAAGACATAAAAGATGAAGAAGAATGTCTCTGCGCATCTGGGTACTTGCGCAAGTTGCAATTCAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGCAGCCTTTGGACGACAATTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTCGGGGCCTTACATCTTTTGGATCATGATAATTCAAGTCTTTCCTTGAAAGATGTATATAAGAAGGTAGCCGAAGGAAAAAATGGGTATCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAGTCTCTTGGTTTTACTGTTGGAAAGCATAAAGTTCCCTGGTCTCTGAAGAGTGTTAGGAATGGCAGTGACATTTCATCTCCAAGTTCTATTGAAAACAAAGGAGCATCAGATGACAAATCAGAAGATGAGAGGTCGATCTTTGAACTATTAGATGCCATTCAGCTCAATGAAGTGACACCCATTTTTTATGTTTTTCTTCCACATAACAAGTTTAGAAAGTCTTCTCTTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGGTATATCCACCTTCAAAAAAAGATATTGAAGTTCTTGAGAGAACATCCAGAGGCATTCCGATGAAATATTGTTATGTTGAACATGGACGTGTCTGTTTATTTTCATTTGATAATGTGGAGCTCCCCATCTTACCTTGA

Protein sequence

MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEVLENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNGYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIFELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIPMKYCYVEHGRVCLFSFDNVELPILP
Homology
[Close]
BLAST of CmUC10G196930.1 vs. NCBI nr
Match: XP_038883355.1 (uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883356.1 uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883357.1 uncharacterized protein LOC120074337 [Benincasa hispida])

HSP 1 Score: 483.4 bits (1243), Expect = 1.2e-132
Identity = 236/265 (89.06%), Postives = 246/265 (92.83%), Query Frame = 0 

Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEA  WESSSGGASGD+DNY +DI +EEECLCASGYLRKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEAVDWESSSGGASGDEDNYEEDINNEEECLCASGYLRKLQFRKHASTARWNDRMGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSL+DVYKK+AEGKNG
Sbjct: 61  LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLEDVYKKIAEGKNG 120

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            LWEQFEVYRHLKSLGF VGKHKVPWSLKSVR+GS+ISSPSSIENKGASD KSEDERSI 
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSLKSVRDGSNISSPSSIENKGASDVKSEDERSIS 180

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           ELLD IQL EV PIF VFLPHNKFRKSS GDPNFMV LTR YPPSKKD+EVL RTSRGIP
Sbjct: 181 ELLDGIQLEEVMPIFDVFLPHNKFRKSSPGDPNFMVYLTRGYPPSKKDLEVLARTSRGIP 240

Query: 241 MKYCYVEHGRVCLFSFDNVELPILP 266
           MKYC+VEHGRVC FSFD VELPILP
Sbjct: 241 MKYCHVEHGRVCFFSFDTVELPILP 265

[Close]
BLAST of CmUC10G196930.1 vs. NCBI nr
Match: XP_011653726.1 (uncharacterized protein LOC101210680 isoform X2 [Cucumis sativus] >KGN54460.1 hypothetical protein Csa_012673 [Cucumis sativus])

HSP 1 Score: 471.5 bits (1212), Expect = 4.9e-129
Identity = 232/267 (86.89%), Postives = 246/267 (92.13%), Query Frame = 0 

Query: 1   MEATVWESSSGGAS--GDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMA 60
           MEAT WESSSGGAS  GD+DNY QDI DEEECL ASG LRKLQFRKHASTARWNDQMGMA
Sbjct: 1   MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGR 120

Query: 121 NGYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERS 180
           +G LWEQFEVYRHLKSLG+ VGKH+VPWSLK+VRN  DISSPSS ENKGASD KS+DE+S
Sbjct: 121 SGRLWEQFEVYRHLKSLGYIVGKHRVPWSLKNVRNDCDISSPSSTENKGASDVKSDDEQS 180

Query: 181 IFELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRG 240
           I  LL+AIQL+EVTPIF VFLPHNKFRKSS GDPNFMVCLTR YPPSK++IEVLERTSRG
Sbjct: 181 ICRLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKYCYVEHGRVCLFSFDNVELPILP 266
           IPMKYC+VEHGRVC FSFD VELP+LP
Sbjct: 241 IPMKYCHVEHGRVCFFSFDKVELPLLP 267

[Close]
BLAST of CmUC10G196930.1 vs. NCBI nr
Match: KAG7028441.1 (tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 461.5 bits (1186), Expect = 5.0e-126
Identity = 222/265 (83.77%), Postives = 240/265 (90.57%), Query Frame = 0 

Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WE SSGGAS DDDN+ QDIK+EEECLC+SG +RKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK+ 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            +WEQFEVYRHLKSLG+ VGKHKVPWS+K  RNG DISS SSIENKG++D  SEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSQSSIENKGSTDFGSEDEKSIC 180

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           EL+DAIQLNEVTPIF V+LPH+KFRKSS GDPNFMVCLTR YPP K DIEV+ER S GIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 241 MKYCYVEHGRVCLFSFDNVELPILP 266
           MKYC+VEHGRVC FSFD VELP+LP
Sbjct: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265

[Close]
BLAST of CmUC10G196930.1 vs. NCBI nr
Match: KAG6596967.1 (Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 461.5 bits (1186), Expect = 5.0e-126
Identity = 222/265 (83.77%), Postives = 240/265 (90.57%), Query Frame = 0 

Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WE SSGGAS DDDN+ QDIK+EEECLC+SG +RKLQFRKHASTARWND+MGMAEV
Sbjct: 272 MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 331

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK+ 
Sbjct: 332 LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 391

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            +WEQFEVYRHLKSLG+ VGKHKVPWS+K  RNG DISS SSIENKG++D  SEDE+SI 
Sbjct: 392 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSQSSIENKGSTDFGSEDEKSIC 451

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           EL+DAIQLNEVTPIF V+LPH+KFRKSS GDPNFMVCLTR YPP K DIEV+ER S GIP
Sbjct: 452 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 511

Query: 241 MKYCYVEHGRVCLFSFDNVELPILP 266
           MKYC+VEHGRVC FSFD VELP+LP
Sbjct: 512 MKYCHVEHGRVCFFSFDKVELPVLP 536

[Close]
BLAST of CmUC10G196930.1 vs. NCBI nr
Match: XP_022156818.1 (uncharacterized protein LOC111023660 [Momordica charantia])

HSP 1 Score: 461.1 bits (1185), Expect = 6.6e-126
Identity = 223/265 (84.15%), Postives = 241/265 (90.94%), Query Frame = 0 

Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WESSSGGASGDD+ Y QD++DEEECLCASG +RKLQFRKHASTARWNDQMGMAEV
Sbjct: 1   MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LEN+GSLWTT GIVRCGKIYCS EETLFL+EVGALHLLDHDNSSLSLKDVYKKVAEGKNG
Sbjct: 61  LENRGSLWTTTGIVRCGKIYCSFEETLFLMEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            LWEQFEVYRHLKSLGF VGKHKVPWS+K VRNGSDIS  SSIEN+GA D +S+DERSI 
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKGVRNGSDISPQSSIENEGAWDLESKDERSIS 180

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           ELL +IQL++V PIF VFLPH+KFRKSS GDPNFMVCLTR YPP KKDIE LERTSRGI 
Sbjct: 181 ELLSSIQLDQVMPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEFLERTSRGIH 240

Query: 241 MKYCYVEHGRVCLFSFDNVELPILP 266
           +KYC+VEHGRVC FSFD +ELP+LP
Sbjct: 241 IKYCHVEHGRVCFFSFDKLELPVLP 265

[Close]
BLAST of CmUC10G196930.1 vs. ExPASy Swiss-Prot
Match: O74908 (Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sen54 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.2e-06
Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 0 

Query: 37  LRKLQFRKHASTARWNDQMGMAEVLENKGSLWTTIGIVRC-GKIYCSIEETLFLIEVGAL 96
           + +L   KHA  A WN Q GM+ V +  G L+ T+G      +++   EETL+L+E G++
Sbjct: 74  VERLISAKHAIIATWNAQNGMSCVEKAHGPLFKTMGTADSQNRMWLLPEETLYLVERGSM 133

Query: 97  HLLDHDNSSLSLKDVYKKVAEGKNGYLWEQFEVYRHLKSLGFTV 140
                +   +SL+ VY   +    G L E + VY HL+  GF+V
Sbjct: 134 ECWSEEGLPMSLQAVY-SASIPLCGSL-ENYLVYAHLRRCGFSV 175

[Close]
BLAST of CmUC10G196930.1 vs. ExPASy TrEMBL
Match: A0A0A0KXV5 (tRNA_int_end_N2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G334710 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.4e-129
Identity = 232/267 (86.89%), Postives = 246/267 (92.13%), Query Frame = 0 

Query: 1   MEATVWESSSGGAS--GDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMA 60
           MEAT WESSSGGAS  GD+DNY QDI DEEECL ASG LRKLQFRKHASTARWNDQMGMA
Sbjct: 1   MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61  EVLENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK 120
           EVLENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEG+
Sbjct: 61  EVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGR 120

Query: 121 NGYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERS 180
           +G LWEQFEVYRHLKSLG+ VGKH+VPWSLK+VRN  DISSPSS ENKGASD KS+DE+S
Sbjct: 121 SGRLWEQFEVYRHLKSLGYIVGKHRVPWSLKNVRNDCDISSPSSTENKGASDVKSDDEQS 180

Query: 181 IFELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRG 240
           I  LL+AIQL+EVTPIF VFLPHNKFRKSS GDPNFMVCLTR YPPSK++IEVLERTSRG
Sbjct: 181 ICRLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRGYPPSKEEIEVLERTSRG 240

Query: 241 IPMKYCYVEHGRVCLFSFDNVELPILP 266
           IPMKYC+VEHGRVC FSFD VELP+LP
Sbjct: 241 IPMKYCHVEHGRVCFFSFDKVELPLLP 267

[Close]
BLAST of CmUC10G196930.1 vs. ExPASy TrEMBL
Match: A0A6J1DRN3 (uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023660 PE=3 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.2e-126
Identity = 223/265 (84.15%), Postives = 241/265 (90.94%), Query Frame = 0 

Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WESSSGGASGDD+ Y QD++DEEECLCASG +RKLQFRKHASTARWNDQMGMAEV
Sbjct: 1   MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LEN+GSLWTT GIVRCGKIYCS EETLFL+EVGALHLLDHDNSSLSLKDVYKKVAEGKNG
Sbjct: 61  LENRGSLWTTTGIVRCGKIYCSFEETLFLMEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            LWEQFEVYRHLKSLGF VGKHKVPWS+K VRNGSDIS  SSIEN+GA D +S+DERSI 
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKGVRNGSDISPQSSIENEGAWDLESKDERSIS 180

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           ELL +IQL++V PIF VFLPH+KFRKSS GDPNFMVCLTR YPP KKDIE LERTSRGI 
Sbjct: 181 ELLSSIQLDQVMPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEFLERTSRGIH 240

Query: 241 MKYCYVEHGRVCLFSFDNVELPILP 266
           +KYC+VEHGRVC FSFD +ELP+LP
Sbjct: 241 IKYCHVEHGRVCFFSFDKLELPVLP 265

[Close]
BLAST of CmUC10G196930.1 vs. ExPASy TrEMBL
Match: A0A6J1FKK4 (tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111446255 PE=3 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 5.4e-126
Identity = 221/265 (83.40%), Postives = 240/265 (90.57%), Query Frame = 0 

Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WE SSGGAS DDDN+ QDIK+EEECLC+SG +RKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK+ 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            +WEQFEVYRHLKSLG+ VGKHKVPWS+K  +NG DISS SSIENKG++D  SEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKSIC 180

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           EL+DAIQLNEVTPIF V+LPH+KFRKSS GDPNFMVCLTR YPP K DIEV+ER S GIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 241 MKYCYVEHGRVCLFSFDNVELPILP 266
           MKYC+VEHGRVC FSFD VELP+LP
Sbjct: 241 MKYCHVEHGRVCFFSFDKVELPVLP 265

[Close]
BLAST of CmUC10G196930.1 vs. ExPASy TrEMBL
Match: A0A6J1I8D9 (tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 6.7e-124
Identity = 218/265 (82.26%), Postives = 240/265 (90.57%), Query Frame = 0 

Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WE SSGGAS DDDN+ QDIK+EEECL +SG +RKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK+ 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            +WEQFEVYRHLKSLG+ VGKHKVPWS+K  RNG DISS SSIENKG++D +SEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEKSIC 180

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           ELL+A+QLNE+TPIF V+LPH+KFRKSS GDPNFMVCLTR YPP K DIEV+ER S GIP
Sbjct: 181 ELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

Query: 241 MKYCYVEHGRVCLFSFDNVELPILP 266
           MKYC+VEHGRVC FSFD V+LP+LP
Sbjct: 241 MKYCHVEHGRVCFFSFDKVKLPVLP 265

[Close]
BLAST of CmUC10G196930.1 vs. ExPASy TrEMBL
Match: A0A6J1ICR8 (tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 6.7e-124
Identity = 218/265 (82.26%), Postives = 240/265 (90.57%), Query Frame = 0 

Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           MEAT WE SSGGAS DDDN+ QDIK+EEECL +SG +RKLQFRKHASTARWND+MGMAEV
Sbjct: 5   MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 64

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120
           LENKGSLWTT GIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGK+ 
Sbjct: 65  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 124

Query: 121 YLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSIF 180
            +WEQFEVYRHLKSLG+ VGKHKVPWS+K  RNG DISS SSIENKG++D +SEDE+SI 
Sbjct: 125 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEKSIC 184

Query: 181 ELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGIP 240
           ELL+A+QLNE+TPIF V+LPH+KFRKSS GDPNFMVCLTR YPP K DIEV+ER S GIP
Sbjct: 185 ELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 244

Query: 241 MKYCYVEHGRVCLFSFDNVELPILP 266
           MKYC+VEHGRVC FSFD V+LP+LP
Sbjct: 245 MKYCHVEHGRVCFFSFDKVKLPVLP 269

[Close]
BLAST of CmUC10G196930.1 vs. TAIR 10
Match: AT3G57360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-55
Identity = 108/265 (40.75%), Postives = 167/265 (63.02%), Query Frame = 0 

Query: 1   MEATVWESSSGGASGDDDNYAQDIKDEEECLCASGYLRKLQFRKHASTARWNDQMGMAEV 60
           ME   WE+SS       +N      D++E   + G + KLQFR  +S ARW  ++GMAEV
Sbjct: 1   MEEKDWEASS-----SSENEGGFPNDDDEEFHSGGSVPKLQFRVGSSKARWITELGMAEV 60

Query: 61  LENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVAEGKN 120
              +G LWTT GI+R GK YC IEE L+L E+G L +L + D+  + LKD+Y+K+AE K+
Sbjct: 61  EVKRGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILGNEDDIVIPLKDLYEKIAEEKS 120

Query: 121 GYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSEDERSI 180
           G  WE +EVYR+LK LG+ +G+H V W+LK      D + P+  E    + +   D  ++
Sbjct: 121 GCSWENYEVYRYLKGLGYILGRHGVSWTLK------DAARPNGEEESACAGECPADNDTV 180

Query: 181 FELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIEVLERTSRGI 240
            +LL  +Q+ +   +F V+LP+++F+KSS G+P+F+ C +   PPSK+DI+VL++     
Sbjct: 181 TKLLGDMQICDAKAVFDVYLPNSRFKKSSPGEPSFVACFSGDSPPSKEDIKVLQKRI-AA 240

Query: 241 PMKYCYVEHGRVCLFSFDNVELPIL 265
           P+ +C++  GR   FSF +++LP+L
Sbjct: 241 PLTFCHIAQGRASFFSFSSIDLPVL 253

[Close]
BLAST of CmUC10G196930.1 vs. TAIR 10
Match: AT3G02370.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1). )

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-39
Identity = 79/175 (45.14%), Postives = 118/175 (67.43%), Query Frame = 0 

Query: 57  MAEVLENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVA 116
           MAEV   +G LWTT GI+R GK YC IEE L+L E+G L LL D D+  +SLKD+Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 117 EGKNGYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSED 176
           EGK G  WE +EVYR+LK LG+ +G+H VPW+ K   N    ++PS  +    + +  +D
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVN----TTPSDEDESLCAAEFFQD 120

Query: 177 ERSIFELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLTRVYPPSKKDIE 231
             S+ +LL  + + +  P+F V+LP+++F+KSS G+P+F+ C +   PPSK++I+
Sbjct: 121 RDSVTKLLSDMHICDARPVFDVYLPNSQFKKSSPGEPSFVTCFSGDSPPSKEEIK 171

[Close]
BLAST of CmUC10G196930.1 vs. TAIR 10
Match: AT3G02370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1); Has 95 Blast hits to 95 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 151.8 bits (382), Expect = 8.0e-37
Identity = 74/164 (45.12%), Postives = 110/164 (67.07%), Query Frame = 0 

Query: 57  MAEVLENKGSLWTTIGIVRCGKIYCSIEETLFLIEVGALHLL-DHDNSSLSLKDVYKKVA 116
           MAEV   +G LWTT GI+R GK YC IEE L+L E+G L LL D D+  +SLKD+Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 117 EGKNGYLWEQFEVYRHLKSLGFTVGKHKVPWSLKSVRNGSDISSPSSIENKGASDDKSED 176
           EGK G  WE +EVYR+LK LG+ +G+H VPW+ K   N    ++PS  +    + +  +D
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVN----TTPSDEDESLCAAEFFQD 120

Query: 177 ERSIFELLDAIQLNEVTPIFYVFLPHNKFRKSSLGDPNFMVCLT 220
             S+ +LL  + + +  P+F V+LP+++F+KSS G+P+F+ C +
Sbjct: 121 RDSVTKLLSDMHICDARPVFDVYLPNSQFKKSSPGEPSFVTCFS 160

The following BLAST results are available for this feature:
BLAST of CmUC10G196930.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038883355.11.2e-13289.06uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883356.1 unchara... [more]
XP_011653726.14.9e-12986.89uncharacterized protein LOC101210680 isoform X2 [Cucumis sativus] >KGN54460.1 hy... [more]
KAG7028441.15.0e-12683.77tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosp... [more]
KAG6596967.15.0e-12683.77Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp.... [more]
XP_022156818.16.6e-12684.15uncharacterized protein LOC111023660 [Momordica charantia][more]
BLAST of CmUC10G196930.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O749084.2e-0634.62Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (... [more]
BLAST of CmUC10G196930.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXV52.4e-12986.89tRNA_int_end_N2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G33... [more]
A0A6J1DRN33.2e-12684.15uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1FKK45.4e-12683.40tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1I8D96.7e-12482.26tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1ICR86.7e-12482.26tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 ... [more]
BLAST of CmUC10G196930.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G57360.11.7e-5540.75unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G02370.21.0e-3945.14unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G02370.18.0e-3745.12unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024336tRNA-splicing endonuclease, subunit Sen54, N-terminalPFAMPF12928tRNA_int_end_N2coord: 41..97
e-value: 6.5E-10
score: 39.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..172
IPR024337tRNA-splicing endonuclease, subunit Sen54PANTHERPTHR21027TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54coord: 1..265

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmUC10G196930CmUC10G196930gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmUC10G196930.1-exonCmUC10G196930.1-exon-CmU531Chr10:28598891..28599664exon
CmUC10G196930.1-exonCmUC10G196930.1-exon-CmU531Chr10:28599766..28599897exon
CmUC10G196930.1-exonCmUC10G196930.1-exon-CmU531Chr10:28600714..28601112exon
CmUC10G196930.1-exonCmUC10G196930.1-exon-CmU531Chr10:28601777..28602028exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmUC10G196930.1-five_prime_utrCmUC10G196930.1-five_prime_utr-CmU531Chr10:28598891..28599536five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmUC10G196930.1-cdsCmUC10G196930.1-cds-CmU531Chr10:28599537..28599664CDS
CmUC10G196930.1-cdsCmUC10G196930.1-cds-CmU531Chr10:28599766..28599897CDS
CmUC10G196930.1-cdsCmUC10G196930.1-cds-CmU531Chr10:28600714..28601112CDS
CmUC10G196930.1-cdsCmUC10G196930.1-cds-CmU531Chr10:28601777..28601915CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmUC10G196930.1-three_prime_utrCmUC10G196930.1-three_prime_utr-CmU531Chr10:28601916..28602028three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmUC10G196930.1CmUC10G196930.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0000379 tRNA-type intron splice site recognition and cleavage
cellular_component GO:0000214 tRNA-intron endonuclease complex
molecular_function GO:0004519 endonuclease activity