CmUC05G102540.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC05G102540.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Translation initiation factor IF-2, putative isoform 1
Location	CmU531Chr05: 31319426 .. 31323030 (+)
Sequence length	1228
RNA-Seq Expression	CmUC05G102540.1
Synteny	CmUC05G102540.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTAGCAATTTCCCTTATTCAATTTCAAACTACTATCTTCCCTCCCGCCGGATCTGAAACGCGGCAGCTCACCGACGTTGTTTAATCCATCTAATCCCTTCTCCGGCGGTTAGATTTCTTCAAATTTTGGAAACTAATGGTTAGAAATTCAGGTTATTAACTTTCATTTGTGTTTAATTATGTTATTACCACTCCGAATTTTAATTAATTTCTCTATGCACTACATTTAGGGTTTGAAAGTCTTTGTATTGTTTTCATTTATGAAATTCCAGTGACGAAGTGCGGATTCGTCTCAGAATGCTTCAACGTGAGTAGTGCAGTAAAGTGAAGAAGAAAGATTGGTTGCTGAGAATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCTAGCCCTTCACCTGGACGAGACGCAAAAGATGAAGCAGCGAATGAATTGAAGAGTGACTCCGACGAGGATGGTATGTTCAAATTCGTAGCGATTTCAATCTTTTCTTCCCGAATCCGGAATTTCATTTAAGCAAAGTTGTCTTGTTTTTCTTCCTGTGATAAATTGTTCCGCTGCTTTCGCCTTCGTTTTTGTTTAGTCGGACGGCATGCTGCTGCAATTCGTGCCATTCGGGATGTGGAGATCCAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACGAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCAAAGAGAAACTTCCAAACTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTGCACACCAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTTACTGCTCTGCCGGAATGCGATCGTTTAATGGATTTGAACTTTCCAGTAAATCAGGTATCTGTAGGTTTTGGATTGTGGTGCGTAAAACTAATTGGTAACTTCTCCCTTATGTGACGCTTGTTTGCTGCAACTCACTCTTTCTTGCTCTTCTGGTGGCAGTGAAAACAAATCCTTTTAATGTTGAGACCCTGCAAATTCCAAACTTCGTAAGTAATTCTACTTTTAGTATCTTAAATTGTTTACTAGTAGAATGAGAACGAGTGCTACCTTGCAAGCTCACATAATATGATTTAGTTTGTCTATATCTTTTGTTTCATGTTGTTGATTTGTGGAAAAATGCCTTCTCGTCTTCATGAGAAATAAAACCTTGTACACTTTGGTATTGTTTAGGATCCGGGTTAAAAAAATGGAAAGACCTCACAATTTTCATTAGATTATATGTGTCTTGTCACAATTGATTCTGAGATGGGACCTCATGTTTATGGAATATGACATTAAAGTCCATGAAGTCTAAGCGGGCATTCGGCTAGAAAACAAAAGATCCGATTTAAAAATGGTGAACAGAAAGAGTCACCATCTTGAGGGGCAAGTTAAGTATCCACATTGGAGAAATATGAGACTTCATGATCTTTATAAGATAACATGAATTACTTCCCTCAAAACCAATTTTCGTAATTATTTCATAGTAGGATCTTCTTTTGTTCCACATTTCATCATATCAATGAATGGTTATTGTTTCCTATAAAAAAAACATGGATTACTCTCATTTTCAATTAGTCTTTAAATGGATACCCATGTTTATCTAGTAGGTAATGACTGACATATTTATTGACAATTCTTGATTTTTAGGTTTTGGAGGAGCCCTCAGATAATATGGTGCTTGGCATGCCAGACGTTCTCCAAACTCCTGGGGTTTGTATCATTGTTGTTCTTGCACATCACTTATTGCATTAGCCTTTTTATGTTTATGTCCTTTCCTAGAGTTGTCCATTATTGCCATTTTTCAATATTTGGTAGTATTTTGGACTCAAATTATCTAGGCACATAGGCACTCAGGGTGAAAGGAATAGAATTACTGTAGTGGTAGCGTGTCTGCAGTCAATAATGGATGTTTTGTTTTAAATAATTAAGGATGTCTAAGCTAACTCATATCTGTAAACAAATTATAGAAACTTATCTAGACTTTATTAGCTCACTCTTGAGCTTTAATAAGTTTGGATAAATGACATGTTGTATTAAGTTTGGATCTTGTTGCTCACCTTTGGTTAGGCTTTGGTTAATAAGGTCCAATGTTAATAGTATAAACAACTTAGAGAGAATGAGTTCAAACACATAGTGGTCACCTCAATCCTCACCTATCAAGGATTTGATATCTTATGAGTTCTTTTGACAGCCAAAGTAGGGTTAGATAGTTGTTTCATGAGGATAATTGAGGCTCACAAGCTGACCCTCACAAAGACTTGGCCTTCATATACTTGGTATATCGCAAAGGAACTTTGTTACTGGTATTGGTTTTACAGTATTGGTTTGAACTTTGTTATAAAAAAGTATTGATGTTACAGCAGGATACTATTTGAAAATACTAGTTTATGTAATGGAACGTAGTATTATATTTTTTTCTCTCTTTTAGCAGTTCATTTTGGATTTGATTATTTCTACTGGAGTCTTCAGTAAAAATGTTCCTATGGATGTCAATACCATGTTGCTATCATCTATTGATCAAAGTTGTCAGCTAGAAGCAAAAAATTAATTGTAGGATTAAGTTTTGAAAGAAGTTATTGGGAGACAATAGTCGATCATTTATCATTAACACGTCATGAATAATCACTGCAGTGTGACTAGATTATAGAGGGAATGATGGAAGTGCTGGTCTCATTTCAAGTCATTATTACCATTATGATTATTATATATGGATAAAAATCATTTATTGATGGATAGAGTTTTAGAAAGCTAGGGAAAATCTTGACCCCATGGAAGGAAGCTGGAAGATGAATTCTAAGTACAAAGATCAGCATGGCCGTAACTAAAGAACACGTGAAGCTTACATTTAGTAACGTCTCAGGCTTGTTTGAGGAATTGAATCAATAAAACTCTCTTAAGGCTAATTTTGCCTCTATTTAGTGTATTCTACTATAAGCTAACTAGTTTTTGTAACATAGGTAAGTAACCAAAGATTGTCCATTGGGATGACACCGAAAACCCGAAGACTTCCAAAGCCAGGCGAGATGCTCGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAAGAAGACAACATGGAAGCAATCCATGGTATGTTTATTTAGGTCATATCTACACATGGAGTATTTTGACACTTCAAATGTGAACAAGTAGGCCAAAATAAGTTGGTAGGTATATATAAATCATGCATCTACATTTTGCTAATGGGTAAATTAATAATGTGCAGAATCAGAAGAGGGTTGATTTGTTGATTCAAGGTCACTTGACTGCTTGTCAATAGATGTGAAACTTCAAATGCGATCATCCTGACCATCGTTCTACCCGTTCTTTCAACCTTCTTGTATTGTATCTAACCTTTTGATTACTTTGCTAAGCTACTCTTACATGTGTATAACTAAGAATTAGTGTGTTGAAGGAACGAACATGTACAAACTCAGAATAGCTCCCACTAGATTACTGTGAGTGGTTATTGTTGTGAAAGTCGATGTTGATATTTATCATAGGCAAAGTGAATTACAGGCTACATCATCCA

mRNA sequence

ACTAGCAATTTCCCTTATTCAATTTCAAACTACTATCTTCCCTCCCGCCGGATCTGAAACGCGGCAGCTCACCGACGTTGTTTAATCCATCTAATCCCTTCTCCGGCGGTTAGATTTCTTCAAATTTTGGAAACTAATGGTTAGAAATTCAGTGACGAAGTGCGGATTCGTCTCAGAATGCTTCAACGTGAGTAGTGCAGTAAAGTGAAGAAGAAAGATTGGTTGCTGAGAATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCTAGCCCTTCACCTGGACGAGACGCAAAAGATGAAGCAGCGAATGAATTGAAGAGTGACTCCGACGAGGATGTCGGACGGCATGCTGCTGCAATTCGTGCCATTCGGGATGTGGAGATCCAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACGAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCAAAGAGAAACTTCCAAACTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTGCACACCAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTTACTGCTCTGCCGGAATGCGATCGTTTAATGGATTTGAACTTTCCAGTAAATCAGTGAAAACAAATCCTTTTAATGTTGAGACCCTGCAAATTCCAAACTTCGTTTTGGAGGAGCCCTCAGATAATATGGTGCTTGGCATGCCAGACGTTCTCCAAACTCCTGGGGTAAGTAACCAAAGATTGTCCATTGGGATGACACCGAAAACCCGAAGACTTCCAAAGCCAGGCGAGATGCTCGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAAGAAGACAACATGGAAGCAATCCATGAATCAGAAGAGGGTTGATTTGTTGATTCAAGGTCACTTGACTGCTTGTCAATAGATGTGAAACTTCAAATGCGATCATCCTGACCATCGTTCTACCCGTTCTTTCAACCTTCTTGTATTGTATCTAACCTTTTGATTACTTTGCTAAGCTACTCTTACATGTGTATAACTAAGAATTAGTGTGTTGAAGGAACGAACATGTACAAACTCAGAATAGCTCCCACTAGATTACTGTGAGTGGTTATTGTTGTGAAAGTCGATGTTGATATTTATCATAGGCAAAGTGAATTACAGGCTACATCATCCA

Coding sequence (CDS)

ATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCTAGCCCTTCACCTGGACGAGACGCAAAAGATGAAGCAGCGAATGAATTGAAGAGTGACTCCGACGAGGATGTCGGACGGCATGCTGCTGCAATTCGTGCCATTCGGGATGTGGAGATCCAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACGAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCAAAGAGAAACTTCCAAACTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTGCACACCAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTTACTGCTCTGCCGGAATGCGATCGTTTAATGGATTTGAACTTTCCAGTAAATCAGTGAAAACAAATCCTTTTAATGTTGAGACCCTGCAAATTCCAAACTTCGTTTTGGAGGAGCCCTCAGATAATATGGTGCTTGGCATGCCAGACGTTCTCCAAACTCCTGGGGTAAGTAACCAAAGATTGTCCATTGGGATGACACCGAAAACCCGAAGACTTCCAAAGCCAGGCGAGATGCTCGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAAGAAGACAACATGGAAGCAATCCATGAATCAGAAGAGGGTTGA

Protein sequence

MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPDVLQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

Homology

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BLAST of CmUC05G102540.1 vs. NCBI nr
Match: XP_038891412.1 (uncharacterized protein LOC120080833 [Benincasa hispida] >XP_038891413.1 uncharacterized protein LOC120080833 [Benincasa hispida])

HSP 1 Score: 432.6 bits (1111), Expect = 2.2e-117
Identity = 221/234 (94.44%), Postives = 227/234 (97.01%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELR 60
           MARR+AKKTVKKSSPSPGRDAKDEAANELKSD DEDV RHAAAIRAIRDVEI+RLITELR
Sbjct: 1   MARRRAKKTVKKSSPSPGRDAKDEAANELKSDCDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFN+EQLQTPLLQFF+EKLPNLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120

Query: 121 SLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPD 180
           SLLH LSTAYPYCSAGMRSFNGFE SSKSVKTNPFNVE LQIPN  LEEPSDNMVLGMP+
Sbjct: 121 SLLHCLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNLALEEPSDNMVLGMPE 180

Query: 181 VLQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 235
           +LQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE
Sbjct: 181 ILQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 234

[Close]

BLAST of CmUC05G102540.1 vs. NCBI nr
Match: XP_016900279.1 (PREDICTED: uncharacterized protein LOC103489436 [Cucumis melo])

HSP 1 Score: 424.1 bits (1089), Expect = 7.9e-115
Identity = 215/235 (91.49%), Postives = 227/235 (96.60%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELR 60
           MARRKAKKTVKKSSPS GR AKDEAA+++K+ SDEDV RHAAAIRAIRDVEI+RLITELR
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFN+EQLQTPLLQFF+EKLP+LSIS RG+QGEIEVQWKDTEDELHTNPADG+DIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120

Query: 121 SLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPD 180
           SLLHRLSTAYPYCSAGMRSFNGFE SSKSVKTNPFN E LQIPNFVLEEPSDNMVLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180

Query: 181 VLQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 236
           +LQTPG+SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 ILQTPGISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 235

[Close]

BLAST of CmUC05G102540.1 vs. NCBI nr
Match: XP_031741813.1 (uncharacterized protein LOC101204054 [Cucumis sativus] >KGN52240.1 hypothetical protein Csa_007879 [Cucumis sativus])

HSP 1 Score: 415.6 bits (1067), Expect = 2.8e-112
Identity = 214/240 (89.17%), Postives = 226/240 (94.17%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELR 60
           MARRKAKKTVKKSSPS GRDAKDEA N+LK+DSDEDV RHAAAIRAIRDVEI+RLIT LR
Sbjct: 3   MARRKAKKTVKKSSPSSGRDAKDEAVNKLKTDSDEDVERHAAAIRAIRDVEIERLITVLR 62

Query: 61  LLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFN+EQLQTPLLQFF+EKLP+LSIS RG+QGEIEV+WKDTEDELHTNPADG+DIHA
Sbjct: 63  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGKQGEIEVRWKDTEDELHTNPADGVDIHA 122

Query: 121 SLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPD 180
           SLLHRLSTAYPYCSAGMRSFNGFE SSKSVKTNPFN E LQIPNFVLEEPSD+M LGMPD
Sbjct: 123 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDDMTLGMPD 182

Query: 181 VLQTPGV-----SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 236
           ++QTPGV     SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 183 IVQTPGVRIFMISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 242

[Close]

BLAST of CmUC05G102540.1 vs. NCBI nr
Match: KAG6604007.1 (hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 415.6 bits (1067), Expect = 2.8e-112
Identity = 216/241 (89.63%), Postives = 227/241 (94.19%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPGRDAKDEAANELKSD------SDEDVGRHAAAIRAIRDVEIQR 60
           MARRKAKK+VKKSSPSP R+AKD +ANELKS+      SDEDV RHA AIRAIRDVEI+R
Sbjct: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFN+EQLQTPLLQFF+EKLP+LSISRRGEQGEIEVQWKDTEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNM 180
           GIDIHASLLHRLSTAYP CSAGMRSFNGFE SSKSVKTNPFNVE LQIPNF LEEPSDNM
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180

Query: 181 VLGMPDVLQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 236
           VLGMPD+LQTPGVSNQRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIHESEE
Sbjct: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIHESEE 240

[Close]

BLAST of CmUC05G102540.1 vs. NCBI nr
Match: KAA0034696.1 (Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa] >TYK09247.1 Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 415.2 bits (1066), Expect = 3.7e-112
Identity = 210/230 (91.30%), Postives = 222/230 (96.52%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELR 60
           MARRKAKKTVKKSSPS GR AKDEAA+++K+ SDEDV RHAAAIRAIRDVEI+RLITELR
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFN+EQLQTPLLQFF+EKLP+LSIS RG+QGEIEVQWKDTEDELHTNPADG+DIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120

Query: 121 SLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPD 180
           SLLHRLSTAYPYCSAGMRSFNGFE SSKSVKTNPFN E LQIPNFVLEEPSDNMVLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180

Query: 181 VLQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 231
           +LQTPG+SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 181 ILQTPGISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 230

[Close]

BLAST of CmUC05G102540.1 vs. ExPASy TrEMBL
Match: A0A1S4DWB9 (uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 3.8e-115
Identity = 215/235 (91.49%), Postives = 227/235 (96.60%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELR 60
           MARRKAKKTVKKSSPS GR AKDEAA+++K+ SDEDV RHAAAIRAIRDVEI+RLITELR
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFN+EQLQTPLLQFF+EKLP+LSIS RG+QGEIEVQWKDTEDELHTNPADG+DIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120

Query: 121 SLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPD 180
           SLLHRLSTAYPYCSAGMRSFNGFE SSKSVKTNPFN E LQIPNFVLEEPSDNMVLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180

Query: 181 VLQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 236
           +LQTPG+SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 ILQTPGISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 235

[Close]

BLAST of CmUC05G102540.1 vs. ExPASy TrEMBL
Match: A0A0A0KRH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622550 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.4e-112
Identity = 214/240 (89.17%), Postives = 226/240 (94.17%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELR 60
           MARRKAKKTVKKSSPS GRDAKDEA N+LK+DSDEDV RHAAAIRAIRDVEI+RLIT LR
Sbjct: 3   MARRKAKKTVKKSSPSSGRDAKDEAVNKLKTDSDEDVERHAAAIRAIRDVEIERLITVLR 62

Query: 61  LLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFN+EQLQTPLLQFF+EKLP+LSIS RG+QGEIEV+WKDTEDELHTNPADG+DIHA
Sbjct: 63  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGKQGEIEVRWKDTEDELHTNPADGVDIHA 122

Query: 121 SLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPD 180
           SLLHRLSTAYPYCSAGMRSFNGFE SSKSVKTNPFN E LQIPNFVLEEPSD+M LGMPD
Sbjct: 123 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDDMTLGMPD 182

Query: 181 VLQTPGV-----SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 236
           ++QTPGV     SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 183 IVQTPGVRIFMISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 242

[Close]

BLAST of CmUC05G102540.1 vs. ExPASy TrEMBL
Match: A0A5A7SXV4 (Translation initiation factor IF-2, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002410 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.8e-112
Identity = 210/230 (91.30%), Postives = 222/230 (96.52%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELR 60
           MARRKAKKTVKKSSPS GR AKDEAA+++K+ SDEDV RHAAAIRAIRDVEI+RLITELR
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFN+EQLQTPLLQFF+EKLP+LSIS RG+QGEIEVQWKDTEDELHTNPADG+DIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120

Query: 121 SLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPD 180
           SLLHRLSTAYPYCSAGMRSFNGFE SSKSVKTNPFN E LQIPNFVLEEPSDNMVLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180

Query: 181 VLQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 231
           +LQTPG+SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 181 ILQTPGISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 230

[Close]

BLAST of CmUC05G102540.1 vs. ExPASy TrEMBL
Match: A0A6J1ILD3 (uncharacterized protein LOC111478496 OS=Cucurbita maxima OX=3661 GN=LOC111478496 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.3e-110
Identity = 212/240 (88.33%), Postives = 224/240 (93.33%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPGRDAKDEAANELKSD------SDEDVGRHAAAIRAIRDVEIQR 60
           MARRKAKK+VKKSSPSP R+AKD +ANELKS+      SDEDV RHA AIRAIRDVEI+R
Sbjct: 1   MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFN+EQLQTPLLQFF EKLP+LSISRRGEQGEIEVQWKDTEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFVEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNM 180
           GIDIHASLLHRLSTAYP CSAG+RSFNGFE SSKSVKTNPFNVE LQIPNFVLEEPSDNM
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGIRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNM 180

Query: 181 VLGMPDVLQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 235
           VLGMPD+LQTPG SNQRLSIGMTPKTRRLPKPGE++VSIHGSPLGVY+E NMEAIHESEE
Sbjct: 181 VLGMPDLLQTPGASNQRLSIGMTPKTRRLPKPGEVIVSIHGSPLGVYREYNMEAIHESEE 240

[Close]

BLAST of CmUC05G102540.1 vs. ExPASy TrEMBL
Match: A0A0A0KK81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501280 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.3e-107
Identity = 210/235 (89.36%), Postives = 216/235 (91.91%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELR 60
           MARRKAKKTVKKSSPSP  +AKDEAAN      DEDV RHAAAIRAIRDVEI+RLIT LR
Sbjct: 1   MARRKAKKTVKKSSPSPILEAKDEAAN------DEDVERHAAAIRAIRDVEIERLITVLR 60

Query: 61  LLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFN+EQLQTPLLQFF+EKLP LSISR GEQGEIEVQWKDTEDEL TNPADGIDIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHA 120

Query: 121 SLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPD 180
           SLLHRLS AYP CSAGMRSFNGFE SSKSVKTNPF VE LQIPNFVLEEPSDN+VLGMPD
Sbjct: 121 SLLHRLSIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPD 180

Query: 181 VLQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 236
           + QTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 IHQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229

[Close]

BLAST of CmUC05G102540.1 vs. TAIR 10
Match: AT4G39630.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 198.7 bits (504), Expect = 5.0e-51
Identity = 115/232 (49.57%), Postives = 153/232 (65.95%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPGRDAKDEAANELKSDSDEDVGRHAAAIRAIRDVEIQRLITELR 60
           M +RKAK+ VK +      + +     + +   DE+V R  AAIRAIRDVEI++++T LR
Sbjct: 1   MPKRKAKECVKLTEEDRNDEKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQMLTALR 60

Query: 61  LLRSYFNEEQLQTPLLQFFKEKLPNLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYF EEQL TP+L FFKE LP+LSISR  E GEIE++W+D   +      +G+D++ 
Sbjct: 61  LLRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNENGVDMNY 120

Query: 121 SLLHRLSTAYPYCSAGMRSFNGFELSSKSVKTNPFNVETLQIPNFVLEEPSDNMVLGMPD 180
           S+L RLS  +    +   S  G++L   +VK N    +  Q+ N V +  S+N +L   D
Sbjct: 121 SILKRLSMRFTDLYS-RSSLGGYDLPD-NVKANLLGTDNPQLDNLVFQGTSENQMLPGHD 180

Query: 181 VLQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIHE 232
             QTPGV+ QRLS GMTPKT RLPK GEM++S+HGSPLGVYKED NM AI+E
Sbjct: 181 AFQTPGVNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAINE 230

The following BLAST results are available for this feature:

BLAST of CmUC05G102540.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891412.1	2.2e-117	94.44	uncharacterized protein LOC120080833 [Benincasa hispida] >XP_038891413.1 unchara...	[more]
XP_016900279.1	7.9e-115	91.49	PREDICTED: uncharacterized protein LOC103489436 [Cucumis melo]	[more]
XP_031741813.1	2.8e-112	89.17	uncharacterized protein LOC101204054 [Cucumis sativus] >KGN52240.1 hypothetical ...	[more]
KAG6604007.1	2.8e-112	89.63	hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0034696.1	3.7e-112	91.30	Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa...	[more]

BLAST of CmUC05G102540.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC05G102540.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DWB9	3.8e-115	91.49	uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=...	[more]
A0A0A0KRH4	1.4e-112	89.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622550 PE=4 SV=1	[more]
A0A5A7SXV4	1.8e-112	91.30	Translation initiation factor IF-2, putative isoform 1 OS=Cucumis melo var. maku...	[more]
A0A6J1ILD3	6.3e-110	88.33	uncharacterized protein LOC111478496 OS=Cucurbita maxima OX=3661 GN=LOC111478496...	[more]
A0A0A0KK81	2.3e-107	89.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501280 PE=4 SV=1	[more]

BLAST of CmUC05G102540.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39630.1	5.0e-51	49.57	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..37
None	No IPR available	PANTHER	PTHR37248	TRANSLATION INITIATION FACTOR	coord: 1..235

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC05G102540	CmUC05G102540	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC05G102540.1-exon	CmUC05G102540.1-exon-CmU531Chr05:31319426..31319577	exon
CmUC05G102540.1-exon	CmUC05G102540.1-exon-CmU531Chr05:31319698..31319885	exon
CmUC05G102540.1-exon	CmUC05G102540.1-exon-CmU531Chr05:31320012..31320350	exon
CmUC05G102540.1-exon	CmUC05G102540.1-exon-CmU531Chr05:31320456..31320502	exon
CmUC05G102540.1-exon	CmUC05G102540.1-exon-CmU531Chr05:31321146..31321208	exon
CmUC05G102540.1-exon	CmUC05G102540.1-exon-CmU531Chr05:31322456..31322588	exon
CmUC05G102540.1-exon	CmUC05G102540.1-exon-CmU531Chr05:31322725..31323030	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC05G102540.1-five_prime_utr	CmUC05G102540.1-five_prime_utr-CmU531Chr05:31319426..31319577	five_prime_UTR
CmUC05G102540.1-five_prime_utr	CmUC05G102540.1-five_prime_utr-CmU531Chr05:31319698..31319776	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC05G102540.1-cds	CmUC05G102540.1-cds-CmU531Chr05:31319777..31319885	CDS
CmUC05G102540.1-cds	CmUC05G102540.1-cds-CmU531Chr05:31320012..31320350	CDS
CmUC05G102540.1-cds	CmUC05G102540.1-cds-CmU531Chr05:31320456..31320502	CDS
CmUC05G102540.1-cds	CmUC05G102540.1-cds-CmU531Chr05:31321146..31321208	CDS
CmUC05G102540.1-cds	CmUC05G102540.1-cds-CmU531Chr05:31322456..31322588	CDS
CmUC05G102540.1-cds	CmUC05G102540.1-cds-CmU531Chr05:31322725..31322741	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC05G102540.1-three_prime_utr	CmUC05G102540.1-three_prime_utr-CmU531Chr05:31322742..31323030	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC05G102540.1	CmUC05G102540.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity