CmUC04G068780.1 (mRNA) Watermelon (USVL531) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTGTGTTTGGGGCTAAGGATTTGATCCTTATAGGATACACAGACTCTGATTTTCAGATTGATAAGGATTCTAGAAAATCCACATTAGGATCAGTATTCACTTTTAACGGCGGGGTTGTAGTTTGGCAGAGCATAAAGCAAGGTTGCATTGCTGACTCTACCATGGAGGCGGGGTATGTAGCTGCTTGTGAAGCTACTAAGGAGGTTGTTTGGCTTAGGAAGTTTTTGACAGACCTGGAAATTATTCCTAACATATCGATGCCCATCACCCTTTATTGTGATAATAGTGGTGTTGTGGCAAATTCCAAGGAGCCTAAAAGCCACACAAACGTGGAAAGCATATTGAGGGCAAGTATCATTTGA ATGCTTGTGTTTGGGGCTAAGGATTTGATCCTTATAGGATACACAGACTCTGATTTTCAGATTGATAAGGATTCTAGAAAATCCACATTAGGATCAGTATTCACTTTTAACGGCGGGGTTGTAGTTTGGCAGAGCATAAAGCAAGGTTGCATTGCTGACTCTACCATGGAGGCGGGGTATGTAGCTGCTTGTGAAGCTACTAAGGAGGTTGTTTGGCTTAGGAAGTTTTTGACAGACCTGGAAATTATTCCTAACATATCGATGCCCATCACCCTTTATTGTGATAATAGTGGTGTTGTGGCAAATTCCAAGGAGCCTAAAAGCCACACAAACGTGGAAAGCATATTGAGGGCAAGTATCATTTGA ATGCTTGTGTTTGGGGCTAAGGATTTGATCCTTATAGGATACACAGACTCTGATTTTCAGATTGATAAGGATTCTAGAAAATCCACATTAGGATCAGTATTCACTTTTAACGGCGGGGTTGTAGTTTGGCAGAGCATAAAGCAAGGTTGCATTGCTGACTCTACCATGGAGGCGGGGTATGTAGCTGCTTGTGAAGCTACTAAGGAGGTTGTTTGGCTTAGGAAGTTTTTGACAGACCTGGAAATTATTCCTAACATATCGATGCCCATCACCCTTTATTGTGATAATAGTGGTGTTGTGGCAAATTCCAAGGAGCCTAAAAGCCACACAAACGTGGAAAGCATATTGAGGGCAAGTATCATTTGA MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVESILRASII Homology
BLAST of CmUC04G068780.1 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 194.9 bits (494), Expect = 4.0e-46 Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 194.9 bits (494), Expect = 4.0e-46 Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 194.9 bits (494), Expect = 4.0e-46 Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. NCBI nr
Match: KAA0043328.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45 Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. NCBI nr
Match: TYK17670.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45 Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 6.7e-20 Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 73.2 bits (178), Expect = 2.3e-12 Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.2e-10 Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46 Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46 Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46 Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. ExPASy TrEMBL
Match: A0A5D3D214 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14220G00010 PE=4 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 9.7e-46 Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. ExPASy TrEMBL
Match: A0A5A7TKJ4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002390 PE=4 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 9.7e-46 Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0
BLAST of CmUC04G068780.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 64.3 bits (155), Expect = 7.6e-11 Identity = 33/102 (32.35%), Postives = 56/102 (54.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|