CmUC04G068140.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC04G068140.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	CmU531Chr04: 986132 .. 987106 (+)
Sequence length	378
RNA-Seq Expression	CmUC04G068140.1
Synteny	CmUC04G068140.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTATCATTATTTTATTTCGTAGTTTTTTTTTTATTATTATAAATTGACTTATTATACTCTAAATATGAAACCAAATATACTGATATATTGGCAGCATTCCGAGTAACTTCTCAACTGAGAGTTCCACCTAAAGAAGTAGGGGCCACTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTATGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCCAGCTTGTTCTTGGAGAAGAAAATCAATATATTGCTTATGTAGCTTATCCCCTAGACCTTTTTGAATAAGGTTCTGTTACTAACATGTTTACTTCCGTTGTGGGTAATGTATTTGGATTCTTAAGATTGGTGTAGTCATTTAATATATTATATCCCGTAGTGTCGTTTCAGATTCAGGATCGAGCCAAGTATCACAACTACTTCTACCCATCCTGTATATTGTCCTTTTTGTTCTGGCTTGGAATACAAATTTTTTTTAGTAGACAAGAATTTAGGAAAAAAATTGATTCATATTGATAGGCAGAATTTGATATAAGAGGGCCGTCATCTTCATATTCCTTTTGTTTCTTTGTCCTTGTTGGGAACACCATGGGAAAATATTGATAGGTGGGTAGTTTCCCAATTGTCTTGTGGTGGAGGCCAACAACTGTGGATCAGGATCTGGAAAGGGTCCCTAGCTAGGCCTTGTATCTTTAATTAGAGTGATTATCAAGTTGATCAGAGTGAGCCAAAAGTGGAGTACAATAGACTAAGTGGAACCTCCTAGCTACAATAATCCAACAATCATGACCTCACTTTTCCAACTCCCCATTACGCACAAATGAATAGGTTAAAAGATTTGGAGTTTAAACGGTGGACGGCCATTGCAGGCCTCTACACAAATCGATCTTCACCCCTTACTGAGCAAAGCTCGAATCACGAAGATGGCCGCTAGAGTTTATGGTCAGTAG

mRNA sequence

ATGTTTATCATTATTTTATTTCGTACATTCCGAGTAACTTCTCAACTGAGAGTTCCACCTAAAGAAGTAGGGGCCACTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTATGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCCAGCTTGTTCTTGGAGAAGAAAATCAATATATTGCTTATTGTCGTTTCAGATTCAGGATCGAGCCAAGTATCACAACTACTTCTACCCATCCTATTTGGAGTTTAAACGGTGGACGGCCATTGCAGGCCTCTACACAAATCGATCTTCACCCCTTACTGAGCAAAGCTCGAATCACGAAGATGGCCGCTAGAGTTTATGGTCAGTAG

Coding sequence (CDS)

ATGTTTATCATTATTTTATTTCGTACATTCCGAGTAACTTCTCAACTGAGAGTTCCACCTAAAGAAGTAGGGGCCACTGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTATGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCCAGCTTGTTCTTGGAGAAGAAAATCAATATATTGCTTATTGTCGTTTCAGATTCAGGATCGAGCCAAGTATCACAACTACTTCTACCCATCCTATTTGGAGTTTAAACGGTGGACGGCCATTGCAGGCCTCTACACAAATCGATCTTCACCCCTTACTGAGCAAAGCTCGAATCACGAAGATGGCCGCTAGAGTTTATGGTCAGTAG

Protein sequence

MFIIILFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRIEPSITTTSTHPIWSLNGGRPLQASTQIDLHPLLSKARITKMAARVYGQ

Homology

[Close]

BLAST of CmUC04G068140.1 vs. NCBI nr
Match: AAA84090.1 (ribulose 1,5-bisphosphate carboxylase [Batis maritima])

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-23
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEEN
Sbjct: 36  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEAVLGEEN 95

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDLH--PLLSK 113
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL   P  SK
Sbjct: 96  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSK 146

[Close]

BLAST of CmUC04G068140.1 vs. NCBI nr
Match: AAA33017.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Batis maritima])

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-23
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEEN
Sbjct: 36  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEAVLGEEN 95

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDLH--PLLSK 113
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL   P  SK
Sbjct: 96  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSK 146

[Close]

BLAST of CmUC04G068140.1 vs. NCBI nr
Match: YP_009864756.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Uvularia grandiflora] >QKE32751.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Uvularia grandiflora])

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-23
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEEN
Sbjct: 36  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEKVLGEEN 95

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDLH--PLLSK 113
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL   P  SK
Sbjct: 96  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSK 146

[Close]

BLAST of CmUC04G068140.1 vs. NCBI nr
Match: AIV43089.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Dimorphotheca pluvialis])

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-23
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEEN
Sbjct: 32  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEAVLGEEN 91

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDL 107
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL
Sbjct: 92  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDL 134

[Close]

BLAST of CmUC04G068140.1 vs. NCBI nr
Match: ANO44961.1 (ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Uvularia grandiflora])

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-23
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEEN
Sbjct: 36  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEKVLGEEN 95

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDLH--PLLSK 113
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL   P  SK
Sbjct: 96  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSK 146

[Close]

BLAST of CmUC04G068140.1 vs. ExPASy Swiss-Prot
Match: P28381 (Ribulose bisphosphate carboxylase large chain OS=Barnadesia caryophylla OX=4238 GN=rbcL PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.5e-26
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEEN
Sbjct: 36  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVLGEEN 95

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDL 107
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL
Sbjct: 96  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDL 138

[Close]

BLAST of CmUC04G068140.1 vs. ExPASy Swiss-Prot
Match: P27064 (Ribulose bisphosphate carboxylase large chain OS=Cucumis sativus OX=3659 GN=rbcL PE=1 SV=5)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-25
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ V GEEN
Sbjct: 36  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEEN 95

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDL 107
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL
Sbjct: 96  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDL 138

[Close]

BLAST of CmUC04G068140.1 vs. ExPASy Swiss-Prot
Match: O62943 (Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban OX=76396 GN=rbcL PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-25
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ V GEEN
Sbjct: 36  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVAGEEN 95

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDL 107
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL
Sbjct: 96  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDL 138

[Close]

BLAST of CmUC04G068140.1 vs. ExPASy Swiss-Prot
Match: P31202 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Salacia pallescens OX=4320 GN=rbcL PE=3 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-25
Identity = 63/111 (56.76%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYG++ V GEEN
Sbjct: 36  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGLEPVAGEEN 95

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDLH--PLLSK 113
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL   P  SK
Sbjct: 96  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSK 146

[Close]

BLAST of CmUC04G068140.1 vs. ExPASy Swiss-Prot
Match: P36478 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthocleista grandiflora OX=28539 GN=rbcL PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ V GEEN
Sbjct: 27  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEEN 86

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDL 107
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL
Sbjct: 87  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDL 129

[Close]

BLAST of CmUC04G068140.1 vs. ExPASy TrEMBL
Match: Q39288 (Ribulose bisphosphate carboxylase large chain OS=Batis maritima OX=4436 GN=rbcL PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEEN
Sbjct: 36  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEAVLGEEN 95

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDLH--PLLSK 113
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL   P  SK
Sbjct: 96  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSK 146

[Close]

BLAST of CmUC04G068140.1 vs. ExPASy TrEMBL
Match: Q31899 (Ribulose bisphosphate carboxylase large chain OS=Batis maritima OX=4436 GN=rbcL PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEEN
Sbjct: 36  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEAVLGEEN 95

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDLH--PLLSK 113
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL   P  SK
Sbjct: 96  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSK 146

[Close]

BLAST of CmUC04G068140.1 vs. ExPASy TrEMBL
Match: A0A0D3M3A5 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Uvularia grandiflora OX=49460 GN=rbcL PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEEN
Sbjct: 27  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEKVLGEEN 86

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDLH--PLLSK 113
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL   P  SK
Sbjct: 87  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSK 137

[Close]

BLAST of CmUC04G068140.1 vs. ExPASy TrEMBL
Match: A0A0A0QLT3 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Uvularia sessilifolia OX=4700 GN=rbcL PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEEN
Sbjct: 27  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEKVLGEEN 86

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDLH--PLLSK 113
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL   P  SK
Sbjct: 87  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSK 137

[Close]

BLAST of CmUC04G068140.1 vs. ExPASy TrEMBL
Match: A0A0R7JP27 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Uvularia perfoliata OX=49461 GN=rbcL PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 65/111 (58.56%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEEN
Sbjct: 27  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEKVLGEEN 86

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDLH--PLLSK 113
           QYIAY  +   +  E S+T   T  + ++ G + L+A    DL   P  SK
Sbjct: 87  QYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSK 137

[Close]

BLAST of CmUC04G068140.1 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 107.8 bits (268), Expect = 6.2e-24
Identity = 58/103 (56.31%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 6   LFRTFRVTSQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEEN 65
           +   FRVT Q  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCY I+ V GEE 
Sbjct: 36  ILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVPGEET 95

Query: 66  QYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQIDL 107
           Q+IAY  +   +  E S+T   T  + ++ G + L A    DL
Sbjct: 96  QFIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALAALRLEDL 138

The following BLAST results are available for this feature:

BLAST of CmUC04G068140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
AAA84090.1	2.2e-23	58.56	ribulose 1,5-bisphosphate carboxylase [Batis maritima]	[more]
AAA33017.1	2.2e-23	58.56	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Batis maritima]	[more]
YP_009864756.1	2.9e-23	58.56	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Uvularia grandifl...	[more]
AIV43089.1	2.9e-23	60.19	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Dimorpho...	[more]
ANO44961.1	2.9e-23	58.56	ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Uvularia...	[more]

BLAST of CmUC04G068140.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P28381	6.5e-26	60.19	Ribulose bisphosphate carboxylase large chain OS=Barnadesia caryophylla OX=4238 ...	[more]
P27064	2.5e-25	59.22	Ribulose bisphosphate carboxylase large chain OS=Cucumis sativus OX=3659 GN=rbcL...	[more]
O62943	2.5e-25	59.22	Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban OX=76396 GN=rbc...	[more]
P31202	3.2e-25	56.76	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Salacia pallescens O...	[more]
P36478	4.2e-25	59.22	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthocleista grandif...	[more]

BLAST of CmUC04G068140.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q39288	1.1e-23	58.56	Ribulose bisphosphate carboxylase large chain OS=Batis maritima OX=4436 GN=rbcL ...	[more]
Q31899	1.1e-23	58.56	Ribulose bisphosphate carboxylase large chain OS=Batis maritima OX=4436 GN=rbcL ...	[more]
A0A0D3M3A5	1.4e-23	58.56	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Uvularia grandiflora...	[more]
A0A0A0QLT3	1.4e-23	58.56	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Uvularia sessilifoli...	[more]
A0A0R7JP27	1.4e-23	58.56	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Uvularia perfoliata ...	[more]

BLAST of CmUC04G068140.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	6.2e-24	56.31	ribulose-bisphosphate carboxylases	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 9..75 e-value: 7.0E-14 score: 52.1
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	GENE3D	3.30.70.150		coord: 5..107 e-value: 6.7E-20 score: 73.3
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	SUPERFAMILY	54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 8..75
IPR033966	RuBisCO	PANTHER	PTHR42704	RIBULOSE BISPHOSPHATE CARBOXYLASE	coord: 9..76
None	No IPR available	PANTHER	PTHR42704:SF9	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	coord: 9..76

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC04G068140	CmUC04G068140	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC04G068140.1-exon	CmUC04G068140.1-exon-CmU531Chr04:986132..986156	exon
CmUC04G068140.1-exon	CmUC04G068140.1-exon-CmU531Chr04:986230..986414	exon
CmUC04G068140.1-exon	CmUC04G068140.1-exon-CmU531Chr04:986536..986589	exon
CmUC04G068140.1-exon	CmUC04G068140.1-exon-CmU531Chr04:986993..987106	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC04G068140.1-cds	CmUC04G068140.1-cds-CmU531Chr04:986132..986156	CDS
CmUC04G068140.1-cds	CmUC04G068140.1-cds-CmU531Chr04:986230..986414	CDS
CmUC04G068140.1-cds	CmUC04G068140.1-cds-CmU531Chr04:986536..986589	CDS
CmUC04G068140.1-cds	CmUC04G068140.1-cds-CmU531Chr04:986993..987106	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC04G068140.1	CmUC04G068140.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity