CmUC02G036140.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC02G036140.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr02: 19483135 .. 19483752 (+)
Sequence length	396
RNA-Seq Expression	CmUC02G036140.1
Synteny	CmUC02G036140.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTATTTTGCTTTCGTTTGCGTTTGAGTCTCGGGTACAATTCGTTTGCTTTCGTTTGCGCTTGGTTTTCTGTTGCATGTGTTGGTGTTAGGATTGTTAGAAGTGCCCGAATTGTACAATAGATTAGGGTTTAAGAGATTACAGCATTGAGGCACGAGAGAATGCACCGAGATCGAGTGTAGAAGATGAGAGTATTTTGGAGACTGTGGGAGACGATATTCGTTTGCTCTCGACTCTTGGTTTTCTATTGCATGTGCTAATGTAGATGGTTGTGTGGGTGCTTTTGGTGGATGGTCGAGAGCTGAAAGTCGAGTGTATCCAAATCTAGGGTTCTAAACAAAACTAGAGTCGAGAGTATCAAGAGTCAAGAGTACCGAGAGTTGAGTGTCGAGAGTCGAGAGCAGGGGTCGAGAGCGAGGGTTTTACATAATGCATTTTTTGCTTTATTTGTTTATTTCCCTTCACCTGATCATGTTTTTTGCTTGCACTTGTAGATGGCCAACTTCAAGATTGTTGCTACAGATCGTTTTCCTGCCCAAGCTACTAGCTTATCATCACATATTGGAGTTGTGAACCGATTGATAAAAGAGAAGCTGACAGATAGGCAGCTATAA

mRNA sequence

ATGCCTTTATTTTGCTTTCGTTTGCGTTTGAGTCTCGGGTACAATTCGTTTGCTTTCGTTTGCGCTTGGTTTTCTGTTGCATGTGTTGGTGTTAGGATTGTTAGAAACTGTGGGAGACGATATTCGTTTGCTCTCGACTCTTGGTTTTCTATTGCATGTGCTAATGTAGATGGTTGTGTGGGTGCTTTTGGTGGATGGTCGAGAGCTGAAAGTCGAGTTCGAGAGTATCAAGAGTCAAGAGTACCGAGAGTTGAGTGTCGAGAGTCGAGAGCAGGGATGGCCAACTTCAAGATTGTTGCTACAGATCGTTTTCCTGCCCAAGCTACTAGCTTATCATCACATATTGGAGTTGTGAACCGATTGATAAAAGAGAAGCTGACAGATAGGCAGCTATAA

Coding sequence (CDS)

ATGCCTTTATTTTGCTTTCGTTTGCGTTTGAGTCTCGGGTACAATTCGTTTGCTTTCGTTTGCGCTTGGTTTTCTGTTGCATGTGTTGGTGTTAGGATTGTTAGAAACTGTGGGAGACGATATTCGTTTGCTCTCGACTCTTGGTTTTCTATTGCATGTGCTAATGTAGATGGTTGTGTGGGTGCTTTTGGTGGATGGTCGAGAGCTGAAAGTCGAGTTCGAGAGTATCAAGAGTCAAGAGTACCGAGAGTTGAGTGTCGAGAGTCGAGAGCAGGGATGGCCAACTTCAAGATTGTTGCTACAGATCGTTTTCCTGCCCAAGCTACTAGCTTATCATCACATATTGGAGTTGTGAACCGATTGATAAAAGAGAAGCTGACAGATAGGCAGCTATAA

Protein sequence

MPLFCFRLRLSLGYNSFAFVCAWFSVACVGVRIVRNCGRRYSFALDSWFSIACANVDGCVGAFGGWSRAESRVREYQESRVPRVECRESRAGMANFKIVATDRFPAQATSLSSHIGVVNRLIKEKLTDRQL

Homology

[Close]

BLAST of CmUC02G036140.1 vs. NCBI nr
Match: XP_038887207.1 (uncharacterized protein LOC120077396 [Benincasa hispida])

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-04
Identity = 27/45 (60.00%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 87  RESRAGMANFKIVATDRFPAQATSLSSHIGVVNRLIKEKLTDRQL 132
           RESR     FKI   DRFP Q TSLSSHIG  N+++KEKLT   L
Sbjct: 3   RESRNQARQFKIPPHDRFPGQTTSLSSHIGTTNKIVKEKLTPTML 47

The following BLAST results are available for this feature:

BLAST of CmUC02G036140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887207.1	9.2e-04	60.00	uncharacterized protein LOC120077396 [Benincasa hispida]	[more]

BLAST of CmUC02G036140.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC02G036140.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC02G036140.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..28 score: 5.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC02G036140	CmUC02G036140	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC02G036140.1-exon	CmUC02G036140.1-exon-CmU531Chr02:19483135..19483240	exon
CmUC02G036140.1-exon	CmUC02G036140.1-exon-CmU531Chr02:19483341..19483452	exon
CmUC02G036140.1-exon	CmUC02G036140.1-exon-CmU531Chr02:19483487..19483544	exon
CmUC02G036140.1-exon	CmUC02G036140.1-exon-CmU531Chr02:19483633..19483752	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC02G036140.1-cds	CmUC02G036140.1-cds-CmU531Chr02:19483135..19483240	CDS
CmUC02G036140.1-cds	CmUC02G036140.1-cds-CmU531Chr02:19483341..19483452	CDS
CmUC02G036140.1-cds	CmUC02G036140.1-cds-CmU531Chr02:19483487..19483544	CDS
CmUC02G036140.1-cds	CmUC02G036140.1-cds-CmU531Chr02:19483633..19483752	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC02G036140.1	CmUC02G036140.1-protein	polypeptide