CmUC01G025250.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC01G025250.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr01: 36589664 .. 36591594 (-)
Sequence length	453
RNA-Seq Expression	CmUC01G025250.1
Synteny	CmUC01G025250.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATATATGAAAAAAGAAAAAGAAAAAAAAGAAAAAAAAAAGGAAAAAGAAAAGAAAAAAGGGAGCAAGATGACAAAGCTTGTCCCAATGCTGTTTTGCCTTCTTCCTTTGCTCATCAGTTATAAAGAGAGATTCTAAACATGTCAAAGTTGAATGAATCTAAAATGGTGGAAGCTGGTGATTTTTGTGAAAATTAATGCTTAGAATCGACTCATTTTCCACATTTTCCATCCAGAGGCTATCTTGCTACCGTACAAGACTTCAAATTTATTAACCATCAGGTACACTTGAGTTAATTATTTGACAGGGAATACGAACTTGCAAATCTGATATTACCTTATGAATAACAATGTCCTTGTCTCCTCGATTTCGCACAATTGAGACATCGACTCAAAAGTCTTCTTATATGTTAATCTCTACTTAGCTCGTTCTCCCTATAAATCCACATAGAAATTAGAGGAAATTGGATTATACCATAATCCAGCAACAGCATGGACCCTAAATTTTGGTGAATAAAGATGGTTATTTTTCAGACACATAAACATTTAGGGAAACAGAGTAACAACTATTTAGCTTTGACGAAGAGCCAAATTTAATATCCGTATCATCTCTTCTACTATTCAACCTGAAAGGCAGACCCCTCTTTCTTAGCTTTGCTTGCCGATACATATTATGAATGAACACAATAACAACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATTGAACAAGGGAAAAAGAAAGGGGACCCATGATTCAAAACGACTCTGAAATTGAGCACAAGCATTGTACAATGCAGAATCAGACCTTTTCAGAAAGGATAATTAATCCCTCCTCTCCTCTCCTCTCCTCTCCTTCCCATGAGACGATTCATGTAATCACACACCAACCTCTCCACATCTAAACAATGGCTATGTCCCAAAGCGCCAAAAGCTTAAACATCCAAATTTTAATCCAAAATCTATGGCTCGTTTGAAAATTGTATCGTAAATGGAATGGTCTAATACATCATTTTTAATTTTAACACCATACGAATGGGGATGTACAAGACGTATATATTATTAAAAAGAAAAGTAGTACAAGGGAAATTAAATGGGCAGGGGAAAAGAAAGAAAGTGGGGGCAGTGGGAAAAAAAGAGGGGAGAACTGAAATGAGAGGATGGTAAGTGGGTGGAAGAATAATGGGTGGCATTTCCAAGTTCCAACACAATAATAATAATAATAATAATAATAATAAAAGGAATAAAAATAATAGATTAATAGCATGCAATAGAAATGCAACTTTTCATGCATTATATAATTCTATATGTACGTGGAATGACCCTACCTGATATGACCAACCATGCATTGACTCTATCCTTTTCCCATTCAAACTCCTTCATCATTCACCACTTTGCAGCCACCAATTTCCTGTTTCCATACTGTTTGATTTTATTTCATTGCCATCCTTTTCTTTCCTTCTTTTTCACTATACCAAATTAGTTAGTATCCTACCCTACCCCCATCAAAGTTTTATTTGATTGAAGATCACTGTGCATTTTATGTTCATCATCAAACTATCAAAGGAAGTAAATCTAGGGTTGTTGTTCTTCCTTGTGAATGTCAGATGGCTATTTTGATATCTAATAACTAGCATAATAGACAAAATTAAGGATATAATGTTTCTGAAAGGATTTTGGCGATTAGGTCATTGACTAATATGAAGAAAATGGCAAAACTTCATGGTTATCATGAAGGAATGACCGCAATAATGGTTCAATGTTTGTGTAAAGAAATGTTTACCATTACCCGGCCGAAATTGCTAATGCTAACTCGTATTATTAATAGTCAGGATTTTGTGAAGGTCTTGGAAGATGAGAGCTATACAAAGGAACCATAA

mRNA sequence

ATGCCATATATGAAAAAAGAAAAAGAAAAAAAAGAAAAAAAAAAGGAAAAAGAAAAGAAAAAAGGGAGCAAGATGACAAAGCTTGTCCCAATGCTGTTTTGCCTTCTTCCTTTGCTCATCAAATCGACTCATTTTCCACATTTTCCATCCAGAGGCTATCTTGCTACCGTACAAGACTTCAAATTTATTAACCATCAGGGGAAAAGAAAGAAAGTGGGGGCAGTGGGAAAAAAAGAGGGGAGAACTGAAATGAGAGGATGGTCATTGACTAATATGAAGAAAATGGCAAAACTTCATGGTTATCATGAAGGAATGACCGCAATAATGGTTCAATGTTTGTGTAAAGAAATGTTTACCATTACCCGGCCGAAATTGCTAATGCTAACTCGTATTATTAATAGTCAGGATTTTGTGAAGGTCTTGGAAGATGAGAGCTATACAAAGGAACCATAA

Coding sequence (CDS)

ATGCCATATATGAAAAAAGAAAAAGAAAAAAAAGAAAAAAAAAAGGAAAAAGAAAAGAAAAAAGGGAGCAAGATGACAAAGCTTGTCCCAATGCTGTTTTGCCTTCTTCCTTTGCTCATCAAATCGACTCATTTTCCACATTTTCCATCCAGAGGCTATCTTGCTACCGTACAAGACTTCAAATTTATTAACCATCAGGGGAAAAGAAAGAAAGTGGGGGCAGTGGGAAAAAAAGAGGGGAGAACTGAAATGAGAGGATGGTCATTGACTAATATGAAGAAAATGGCAAAACTTCATGGTTATCATGAAGGAATGACCGCAATAATGGTTCAATGTTTGTGTAAAGAAATGTTTACCATTACCCGGCCGAAATTGCTAATGCTAACTCGTATTATTAATAGTCAGGATTTTGTGAAGGTCTTGGAAGATGAGAGCTATACAAAGGAACCATAA

Protein sequence

MPYMKKEKEKKEKKKEKEKKKGSKMTKLVPMLFCLLPLLIKSTHFPHFPSRGYLATVQDFKFINHQGKRKKVGAVGKKEGRTEMRGWSLTNMKKMAKLHGYHEGMTAIMVQCLCKEMFTITRPKLLMLTRIINSQDFVKVLEDESYTKEP

Homology

The following BLAST results are available for this feature:

BLAST of CmUC01G025250.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmUC01G025250.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmUC01G025250.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmUC01G025250.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC01G025250	CmUC01G025250	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC01G025250.1-exon	CmUC01G025250.1-exon-CmU531Chr01:36589664..36589856	exon
CmUC01G025250.1-exon	CmUC01G025250.1-exon-CmU531Chr01:36590381..36590442	exon
CmUC01G025250.1-exon	CmUC01G025250.1-exon-CmU531Chr01:36591311..36591387	exon
CmUC01G025250.1-exon	CmUC01G025250.1-exon-CmU531Chr01:36591474..36591594	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC01G025250.1-cds	CmUC01G025250.1-cds-CmU531Chr01:36589664..36589856	CDS
CmUC01G025250.1-cds	CmUC01G025250.1-cds-CmU531Chr01:36590381..36590442	CDS
CmUC01G025250.1-cds	CmUC01G025250.1-cds-CmU531Chr01:36591311..36591387	CDS
CmUC01G025250.1-cds	CmUC01G025250.1-cds-CmU531Chr01:36591474..36591594	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC01G025250.1	CmUC01G025250.1-protein	polypeptide