CmUC01G020770.1 (mRNA) Watermelon (USVL531) v1

Overview


Name	CmUC01G020770.1
Type	mRNA
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Unknown protein
Location	CmU531Chr01: 33348495 .. 33349007 (-)
Sequence length	513
RNA-Seq Expression	CmUC01G020770.1
Synteny	CmUC01G020770.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTTAGAAAGAATGATGAAGAGGCATCTGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTACAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGTTTGTGAAATTGCTATCTCTTTCTCAATCCCCTAAAACACATAGCTGCTGCAGCTTCTTCTTCAACAATACAAATACTTGTGTGCTTTTTGAGCCTTCAATTTCACATCCTCATCATGAGTTGATGATGATGAAGAAGAAGAAGAAGAAGAAGGAGGTAGAACCAGCAATCTTAACATTGCTGCCTCAAACATCTCTATCTCTCTCCTTAACTTCTTCAAATGATCAACCCAACAATAATATCCCAACTTTGATGGACTTATGGCCACTGCCTCGTACTACTACTACTAGTACTACAACTTCTTGTGATAGTGCCATCTCTTTTATTACTAAACTAAATGATCATGAATACTCTGACTCTGATATCGGTGTTGATACTTCTCTTCATTTGTAA

mRNA sequence

ATGGGTCTTAGAAAGAATGATGAAGAGGCATCTGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTACAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGTTTGTGAAATTGCTATCTCTTTCTCAATCCCCTAAAACACATAGCTGCTGCAGCTTCTTCTTCAACAATACAAATACTTGTGTGCTTTTTGAGCCTTCAATTTCACATCCTCATCATGAGTTGATGATGATGAAGAAGAAGAAGAAGAAGAAGGAGGTAGAACCAGCAATCTTAACATTGCTGCCTCAAACATCTCTATCTCTCTCCTTAACTTCTTCAAATGATCAACCCAACAATAATATCCCAACTTTGATGGACTTATGGCCACTGCCTCGTACTACTACTACTAGTACTACAACTTCTTGTGATAGTGCCATCTCTTTTATTACTAAACTAAATGATCATGAATACTCTGACTCTGATATCGGTGTTGATACTTCTCTTCATTTGTAA

Coding sequence (CDS)

ATGGGTCTTAGAAAGAATGATGAAGAGGCATCTGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTACAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGTTTGTGAAATTGCTATCTCTTTCTCAATCCCCTAAAACACATAGCTGCTGCAGCTTCTTCTTCAACAATACAAATACTTGTGTGCTTTTTGAGCCTTCAATTTCACATCCTCATCATGAGTTGATGATGATGAAGAAGAAGAAGAAGAAGAAGGAGGTAGAACCAGCAATCTTAACATTGCTGCCTCAAACATCTCTATCTCTCTCCTTAACTTCTTCAAATGATCAACCCAACAATAATATCCCAACTTTGATGGACTTATGGCCACTGCCTCGTACTACTACTACTAGTACTACAACTTCTTGTGATAGTGCCATCTCTTTTATTACTAAACTAAATGATCATGAATACTCTGACTCTGATATCGGTGTTGATACTTCTCTTCATTTGTAA

Protein sequence

MGLRKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNNTNTCVLFEPSISHPHHELMMMKKKKKKKEVEPAILTLLPQTSLSLSLTSSNDQPNNNIPTLMDLWPLPRTTTTSTTTSCDSAISFITKLNDHEYSDSDIGVDTSLHL

Homology

[Close]

BLAST of CmUC01G020770.1 vs. NCBI nr
Match: TYK12991.1 (hypothetical protein E5676_scaffold255G005880 [Cucumis melo var. makuwa])

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-54
Identity = 132/189 (69.84%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 3   LRKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFN 62
           +RK+++EASV VHSSSIALLQERFRQLQK+KEMREERE VKLLSLSQ PKTHSCCSFFFN
Sbjct: 6   IRKDNQEASVVVHSSSIALLQERFRQLQKVKEMREEREVVKLLSLSQYPKTHSCCSFFFN 65

Query: 63  ----NTNTCVLFEPSISH--PHHELMMMKKKKK---KKEVEPAILTLLPQTSLSLSLTSS 122
               NTNTCV+FEPSIS+  PHHELMM  KKKK          +LTLLPQTSLSLSLT+S
Sbjct: 66  NTNTNTNTCVVFEPSISNSSPHHELMMTMKKKKVPSSSSSTTTMLTLLPQTSLSLSLTTS 125

Query: 123 ND-----QPNNNIPTLMDLWPLPRTTTTSTTTSCDSAISFITKLNDHE-------YSDSD 171
           +      Q +NNIPTLMDLWP+P +T+T T++SCDSAISFI+KLNDH+       Y DSD
Sbjct: 126 SSHDHDHQQSNNIPTLMDLWPVPSSTST-TSSSCDSAISFISKLNDHDHHDRDHHYFDSD 185

[Close]

BLAST of CmUC01G020770.1 vs. NCBI nr
Match: KGN49044.1 (hypothetical protein Csa_002770 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 9.6e-54
Identity = 131/189 (69.31%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 4   RKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNN 63
           + N E ASV +HSSSIALLQERFRQLQK+KEMREE+E VKLLSLSQ PKTH+CCSFFFNN
Sbjct: 8   KDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHTCCSFFFNN 67

Query: 64  -----TNTCVLFEPSIS--HPHHELMMMKKKKK---KKEVEPAILTLLPQTSLSLSLTSS 123
                TNTCV+FEPSIS  +PHHELMM  KKKK          +LTLLPQTSLSLSLTSS
Sbjct: 68  TNTNSTNTCVVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQTSLSLSLTSS 127

Query: 124 ND-----QPNNNIPTLMDLWPLPRTTTTSTTTSCDSAISFITKLNDHE-------YSDSD 171
           +      Q +NNIPTLMDLWP+P  ++TSTT+SCDSAISFITKLNDH+       Y DSD
Sbjct: 128 SSHDHDHQQSNNIPTLMDLWPVP-ASSTSTTSSCDSAISFITKLNDHDHHDHDHHYFDSD 187

[Close]

BLAST of CmUC01G020770.1 vs. NCBI nr
Match: KAG6594702.1 (hypothetical protein SDJN03_11255, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-25
Identity = 90/176 (51.14%), Postives = 111/176 (63.07%), Query Frame = 0


Query: 1   MGLRKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFF 60
           MG  +++   S+ V  SSIALLQERFRQLQK+KEMREERE V+LLSLS +PK H      
Sbjct: 1   MGTHQSNHHPSLVV-QSSIALLQERFRQLQKVKEMREERELVRLLSLS-NPKKHGL---- 60

Query: 61  FNNTNTCVLFEPSISHPHHELMMMKKKKKKKEVEPAILTLLPQTSLSLSLTSSNDQP--- 120
               NTCVLFEPS++      MMM        +    +  LPQTSLSL  TS +      
Sbjct: 61  ---FNTCVLFEPSVA-----TMMMLPTTTTTTMTATKMLTLPQTSLSLWPTSPSPGKKLT 120

Query: 121 ---NNNIPTLMDLWPLPRTTTTSTTTSCDSAISFITKLNDHEYSDSDIGVDTSLHL 171
              + ++P LM+LWP+  + TTST++SCDSAIS I+KL     SDSDI VDTSLHL
Sbjct: 121 VGVDVDVPALMNLWPVD-SVTTSTSSSCDSAISLISKLEHDHESDSDIDVDTSLHL 161

[Close]

BLAST of CmUC01G020770.1 vs. NCBI nr
Match: XP_015878993.1 (uncharacterized protein LOC107415217 [Ziziphus jujuba])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-10
Identity = 69/172 (40.12%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 12  VAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNNTNTCVLFE 71
           +A+H SSIALLQERFRQLQ+MKEMRE +E +++L +  + +  S       N N  + FE
Sbjct: 9   IAIH-SSIALLQERFRQLQRMKEMREGKELIRMLVVEPNKQKQSDI-----NLNPTLYFE 68

Query: 72  PSISHPHHELMMMKKKKKKKEVEPAILTLLPQTSLSLSLTSSNDQPNNNI---------- 131
           P  S P+ + +            P I  +  Q SLSL     N + N NI          
Sbjct: 69  PPKSFPNPDFL-----------TPQIRPISQQDSLSL---WQNLRSNMNIEDFRGIEISC 128

Query: 132 ---PTLMDLWPLPRTTTTSTTTSCDSAISFITKLNDHEYSDSDIGVDTSLHL 171
              PTLM+LWP+  T ++S  +S  S+ S I K  D   SDSD  VDTSLHL
Sbjct: 129 CVPPTLMNLWPVNDTPSSSNASS--SSSSNIYKFED---SDSDSDVDTSLHL 155

[Close]

BLAST of CmUC01G020770.1 vs. NCBI nr
Match: KAF3451851.1 (hypothetical protein FNV43_RR07947 [Rhamnella rubrinervis])

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-08
Identity = 60/163 (36.81%), Postives = 92/163 (56.44%), Query Frame = 0


Query: 9   EASVAVHSSSIALLQERFRQLQKMKEMREEREFV-KLLSLSQSPKTHSCCSFFFNNTNTC 68
           E    VH SSIALLQERFRQLQ+MKEMREE+E + ++L++++S   H    +   +    
Sbjct: 7   ECPSVVH-SSIALLQERFRQLQRMKEMREEKELINRMLAVAESNNKH----YLNIHVKPT 66

Query: 69  VLFEPSISHPHHELMMMKKKKKKKEVEPAILTLLPQTSLSLSLTSSNDQPNNNIPTLMDL 128
           + FEP+   P  +  +  + + +  V     + +   S+  S  SS  +P      LM+L
Sbjct: 67  MYFEPACLFPKPQRAIQVQPQNQDSVS-QWQSNVEYRSVESSSISSCTRP------LMNL 126

Query: 129 WPLPRTTTTSTTTSCDSAISFITKLNDHEYSDSDIGVDTSLHL 171
           WP+   T +S   S D+++SF +KL++    DS+  VDTSLHL
Sbjct: 127 WPIDYDTPSS---SSDASLSF-SKLSEEYLCDSESDVDTSLHL 153

[Close]

BLAST of CmUC01G020770.1 vs. ExPASy TrEMBL
Match: A0A5D3CME5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005880 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 5.5e-55
Identity = 132/189 (69.84%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 3   LRKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFN 62
           +RK+++EASV VHSSSIALLQERFRQLQK+KEMREERE VKLLSLSQ PKTHSCCSFFFN
Sbjct: 6   IRKDNQEASVVVHSSSIALLQERFRQLQKVKEMREEREVVKLLSLSQYPKTHSCCSFFFN 65

Query: 63  ----NTNTCVLFEPSISH--PHHELMMMKKKKK---KKEVEPAILTLLPQTSLSLSLTSS 122
               NTNTCV+FEPSIS+  PHHELMM  KKKK          +LTLLPQTSLSLSLT+S
Sbjct: 66  NTNTNTNTCVVFEPSISNSSPHHELMMTMKKKKVPSSSSSTTTMLTLLPQTSLSLSLTTS 125

Query: 123 ND-----QPNNNIPTLMDLWPLPRTTTTSTTTSCDSAISFITKLNDHE-------YSDSD 171
           +      Q +NNIPTLMDLWP+P +T+T T++SCDSAISFI+KLNDH+       Y DSD
Sbjct: 126 SSHDHDHQQSNNIPTLMDLWPVPSSTST-TSSSCDSAISFISKLNDHDHHDRDHHYFDSD 185

[Close]

BLAST of CmUC01G020770.1 vs. ExPASy TrEMBL
Match: A0A0A0KJS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511110 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.7e-54
Identity = 131/189 (69.31%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 4   RKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNN 63
           + N E ASV +HSSSIALLQERFRQLQK+KEMREE+E VKLLSLSQ PKTH+CCSFFFNN
Sbjct: 8   KDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHTCCSFFFNN 67

Query: 64  -----TNTCVLFEPSIS--HPHHELMMMKKKKK---KKEVEPAILTLLPQTSLSLSLTSS 123
                TNTCV+FEPSIS  +PHHELMM  KKKK          +LTLLPQTSLSLSLTSS
Sbjct: 68  TNTNSTNTCVVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQTSLSLSLTSS 127

Query: 124 ND-----QPNNNIPTLMDLWPLPRTTTTSTTTSCDSAISFITKLNDHE-------YSDSD 171
           +      Q +NNIPTLMDLWP+P  ++TSTT+SCDSAISFITKLNDH+       Y DSD
Sbjct: 128 SSHDHDHQQSNNIPTLMDLWPVP-ASSTSTTSSCDSAISFITKLNDHDHHDHDHHYFDSD 187

[Close]

BLAST of CmUC01G020770.1 vs. ExPASy TrEMBL
Match: A0A6P3ZU56 (uncharacterized protein LOC107415217 OS=Ziziphus jujuba OX=326968 GN=LOC107415217 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.3e-11
Identity = 69/172 (40.12%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 12  VAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNNTNTCVLFE 71
           +A+H SSIALLQERFRQLQ+MKEMRE +E +++L +  + +  S       N N  + FE
Sbjct: 9   IAIH-SSIALLQERFRQLQRMKEMREGKELIRMLVVEPNKQKQSDI-----NLNPTLYFE 68

Query: 72  PSISHPHHELMMMKKKKKKKEVEPAILTLLPQTSLSLSLTSSNDQPNNNI---------- 131
           P  S P+ + +            P I  +  Q SLSL     N + N NI          
Sbjct: 69  PPKSFPNPDFL-----------TPQIRPISQQDSLSL---WQNLRSNMNIEDFRGIEISC 128

Query: 132 ---PTLMDLWPLPRTTTTSTTTSCDSAISFITKLNDHEYSDSDIGVDTSLHL 171
              PTLM+LWP+  T ++S  +S  S+ S I K  D   SDSD  VDTSLHL
Sbjct: 129 CVPPTLMNLWPVNDTPSSSNASS--SSSSNIYKFED---SDSDSDVDTSLHL 155

[Close]

BLAST of CmUC01G020770.1 vs. ExPASy TrEMBL
Match: W9SFE8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000264 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 65/176 (36.93%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 4   RKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNN 63
           R+  ++    VH SSIALLQERFRQLQ++KE+REERE +++LS       ++  +   N 
Sbjct: 3   REIHDQTHAVVH-SSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNNLMN---NP 62

Query: 64  TNTCV---LFEPSISHPHHELMMMKKKKKKKEVEPAILTLLPQTSLSLSLTSSNDQ---- 123
           T  C    L   S  H HH  ++  + +         L+L P  +L  S ++S DQ    
Sbjct: 63  TMICEPSRLVFHSDHHHHHHHLIFPQIRSSPSAPQVSLSLWP--ALQCSSSASEDQYYCS 122

Query: 124 -PNNNIPTL-MDLWPLPRTTTTSTTTSCDSAISFITKLNDHEYSDSDIGVDTSLHL 171
             N+  P L M LWPL  T   +  +   S  S +    DH+YSD    VDTSLHL
Sbjct: 123 SINDQTPLLMMKLWPLD-THAPAEFSEASSDKSHLDSDPDHDYSD----VDTSLHL 167

[Close]

BLAST of CmUC01G020770.1 vs. ExPASy TrEMBL
Match: W9QDY3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010582 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 65/176 (36.93%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 4   RKNDEEASVAVHSSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNN 63
           R+  ++    VH SSIALLQERFRQLQ++KE+REERE +++LS       ++  +   N 
Sbjct: 3   REIHDQTHAVVH-SSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNNLMN---NP 62

Query: 64  TNTCV---LFEPSISHPHHELMMMKKKKKKKEVEPAILTLLPQTSLSLSLTSSNDQ---- 123
           T  C    L   S  H HH  ++  + +         L+L P  +L  S ++S DQ    
Sbjct: 63  TMICEPLRLVFHSDHHHHHHHLIFPQIRSSPSAPQVSLSLWP--ALQCSSSASEDQYYCS 122

Query: 124 -PNNNIPTL-MDLWPLPRTTTTSTTTSCDSAISFITKLNDHEYSDSDIGVDTSLHL 171
             N+  P L M LWPL  T   +  +   S  S +    DH+YSD    VDTSLHL
Sbjct: 123 SINDQTPLLMMKLWPLD-THAPAEFSEASSDKSHLDSDPDHDYSD----VDTSLHL 167

The following BLAST results are available for this feature:

BLAST of CmUC01G020770.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK12991.1	1.1e-54	69.84	hypothetical protein E5676_scaffold255G005880 [Cucumis melo var. makuwa]	[more]
KGN49044.1	9.6e-54	69.31	hypothetical protein Csa_002770 [Cucumis sativus]	[more]
KAG6594702.1	3.2e-25	51.14	hypothetical protein SDJN03_11255, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_015878993.1	1.7e-10	40.12	uncharacterized protein LOC107415217 [Ziziphus jujuba]	[more]
KAF3451851.1	4.7e-08	36.81	hypothetical protein FNV43_RR07947 [Rhamnella rubrinervis]	[more]

BLAST of CmUC01G020770.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC01G020770.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CME5	5.5e-55	69.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KJS5	4.7e-54	69.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511110 PE=4 SV=1	[more]
A0A6P3ZU56	8.3e-11	40.12	uncharacterized protein LOC107415217 OS=Ziziphus jujuba OX=326968 GN=LOC10741521...	[more]
W9SFE8	1.5e-07	36.93	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000264 PE=4 SV=1	[more]
W9QDY3	1.5e-07	36.93	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010582 PE=4 SV=1	[more]

BLAST of CmUC01G020770.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..39
None	No IPR available	PANTHER	PTHR34570:SF2	OS03G0593100 PROTEIN	coord: 10..170
None	No IPR available	PANTHER	PTHR34570	OS03G0593100 PROTEIN	coord: 10..170

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmUC01G020770	CmUC01G020770	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC01G020770.1-exon	CmUC01G020770.1-exon-CmU531Chr01:33348495..33349007	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmUC01G020770.1-cds	CmUC01G020770.1-cds-CmU531Chr01:33348495..33349007	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmUC01G020770.1	CmUC01G020770.1-protein	polypeptide