Clc11G13050.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc11G13050.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	B3 domain-containing protein At2g31420-like
Location	ClcChr11: 23227571 .. 23228083 (-)
Sequence length	513
RNA-Seq Expression	Clc11G13050.1
Synteny	Clc11G13050.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGCTTGAAGCAAAATGCAATAGAGTTATTAACAAGGCCAGACATTCCAAGTGGTATGAGAAAGCAAATTGAAGAGATGAAAGGATATCATCTTCATTTGGTGATTCAAAAGCAATTAGAAGACATTGATATCAACAAGAAAGAAGGTCGTTTATGTCTTCCATTAAATAATCTCTTATTCGATTTCACCAACCACAAGGAGAGGGAGCTCTTTAACAACAACAATAATAATGGAATCAACAAAATGGAGAGAATAATGGAAGTCAAGATTCTTGATGAGGCTCAAAGAGAAACCTCAATTTTGTTGAACAAATCCATCATTGGAAACCAATATTACTTTTCTTTGATGGGTGGTTGGAGTTCATTTGTGGACACTAATTTCTTGCGAACTGGAAACATCATCCAACTTTGGAGCTTTAGAAGAGAGAGATTGATCCCTTCTAATAGAACATTTGTCTCTGATCTTTACTTTGCCTTGAATAAAGTTGACCATCGAATTTGTCTTTAG

mRNA sequence

ATGACAAGCTTGAAGCAAAATGCAATAGAGTTATTAACAAGGCCAGACATTCCAAGTGGTATGAGAAAGCAAATTGAAGAGATGAAAGGATATCATCTTCATTTGGTGATTCAAAAGCAATTAGAAGACATTGATATCAACAAGAAAGAAGGTCGTTTATGTCTTCCATTAAATAATCTCTTATTCGATTTCACCAACCACAAGGAGAGGGAGCTCTTTAACAACAACAATAATAATGGAATCAACAAAATGGAGAGAATAATGGAAGTCAAGATTCTTGATGAGGCTCAAAGAGAAACCTCAATTTTGTTGAACAAATCCATCATTGGAAACCAATATTACTTTTCTTTGATGGGTGGTTGGAGTTCATTTGTGGACACTAATTTCTTGCGAACTGGAAACATCATCCAACTTTGGAGCTTTAGAAGAGAGAGATTGATCCCTTCTAATAGAACATTTGTCTCTGATCTTTACTTTGCCTTGAATAAAGTTGACCATCGAATTTGTCTTTAG

Coding sequence (CDS)

ATGACAAGCTTGAAGCAAAATGCAATAGAGTTATTAACAAGGCCAGACATTCCAAGTGGTATGAGAAAGCAAATTGAAGAGATGAAAGGATATCATCTTCATTTGGTGATTCAAAAGCAATTAGAAGACATTGATATCAACAAGAAAGAAGGTCGTTTATGTCTTCCATTAAATAATCTCTTATTCGATTTCACCAACCACAAGGAGAGGGAGCTCTTTAACAACAACAATAATAATGGAATCAACAAAATGGAGAGAATAATGGAAGTCAAGATTCTTGATGAGGCTCAAAGAGAAACCTCAATTTTGTTGAACAAATCCATCATTGGAAACCAATATTACTTTTCTTTGATGGGTGGTTGGAGTTCATTTGTGGACACTAATTTCTTGCGAACTGGAAACATCATCCAACTTTGGAGCTTTAGAAGAGAGAGATTGATCCCTTCTAATAGAACATTTGTCTCTGATCTTTACTTTGCCTTGAATAAAGTTGACCATCGAATTTGTCTTTAG

Protein sequence

MTSLKQNAIELLTRPDIPSGMRKQIEEMKGYHLHLVIQKQLEDIDINKKEGRLCLPLNNLLFDFTNHKERELFNNNNNNGINKMERIMEVKILDEAQRETSILLNKSIIGNQYYFSLMGGWSSFVDTNFLRTGNIIQLWSFRRERLIPSNRTFVSDLYFALNKVDHRICL

Homology

[Close]

BLAST of Clc11G13050.1 vs. NCBI nr
Match: KAG6586099.1 (hypothetical protein SDJN03_18832, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-32
Identity = 81/169 (47.93%), Postives = 109/169 (64.50%), Query Frame = 0


Query: 3   SLKQNAIELLTRPDIPSGMRKQIEEMKGYHLHLVIQKQLEDIDINKKEGRLCLPLNNLLF 62
           S K+    + + PDIP+ MRK+IE+M GY+L +VI K+L DID+NKK+GR+   + N+ F
Sbjct: 10  SNKRTKFFIYSTPDIPTRMRKKIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFF 69

Query: 63  DFTNHKERELFNNNNNNGINKMERIMEVKILDEAQRETSILLNKSIIGNQYYFSLMGGWS 122
           DF   KE+E+ N+ N         ++EVKI+DEAQR + +LL K  I     +     W+
Sbjct: 70  DFLTPKEKEILNDANG--------VIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWN 129

Query: 123 SFVDTNFLRTGNIIQLWSFRRERLIP-SNRTFVSDLYFALNKVDHRICL 171
           SFVD N L+ GN+IQLWSFRR RL+   N  F SDLYFALN +D R  L
Sbjct: 130 SFVDKNCLKFGNLIQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGRCIL 170

[Close]

BLAST of Clc11G13050.1 vs. NCBI nr
Match: XP_022938320.1 (B3 domain-containing protein At1g05930-like [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-31
Identity = 82/166 (49.40%), Postives = 107/166 (64.46%), Query Frame = 0


Query: 6   QNAIELLTRPDIPSGMRKQIEEMKGYHLHLVIQKQLEDIDINKKEGRLCLPLNNLLFDFT 65
           +NA  L+T PD+P+ MRKQIEEM+GY+L LVI K+L + D+N+K+GRL L +  +LFDF 
Sbjct: 13  RNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFI 72

Query: 66  NHKERELFNNNNNNGINKMERIMEVKILDEAQRETSILLNKSIIGNQYYFSLMGGWSSFV 125
              E +L N+ N         +MEVKILDE QR + + L K  I     + L   W+SFV
Sbjct: 73  TPDEEKLLNDANG--------VMEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFV 132

Query: 126 DTNFLRTGNIIQLWSFRRERLIP-SNRTFVSDLYFALNKVDHRICL 171
             N L+ G++IQLWSFRR RL+   N  F SDLYFALN +D R  L
Sbjct: 133 AKNCLKIGHLIQLWSFRRVRLVDIENEIFTSDLYFALNTMDGRCFL 170

[Close]

BLAST of Clc11G13050.1 vs. NCBI nr
Match: KAG6586098.1 (hypothetical protein SDJN03_18831, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-30
Identity = 81/166 (48.80%), Postives = 105/166 (63.25%), Query Frame = 0


Query: 6   QNAIELLTRPDIPSGMRKQIEEMKGYHLHLVIQKQLEDIDINKKEGRLCLPLNNLLFDFT 65
           +NA  L+T PD+P+ MRKQIEEM+GY+L LVI K+L + D+N+K+GRL L +  +LF F 
Sbjct: 13  RNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFI 72

Query: 66  NHKERELFNNNNNNGINKMERIMEVKILDEAQRETSILLNKSIIGNQYYFSLMGGWSSFV 125
              E +L N+ N          MEVKILDE QR + + L K  I     + L   W+SFV
Sbjct: 73  TPDEEKLLNDANG--------FMEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFV 132

Query: 126 DTNFLRTGNIIQLWSFRRERLIP-SNRTFVSDLYFALNKVDHRICL 171
             N L+ G++IQLWSFRR RL+   N  F SDLYFALN +D R  L
Sbjct: 133 AKNCLKIGHLIQLWSFRRVRLVDIENEIFTSDLYFALNTMDGRCFL 170

[Close]

BLAST of Clc11G13050.1 vs. NCBI nr
Match: XP_022969589.1 (B3 domain-containing protein At2g31420-like [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-29
Identity = 77/151 (50.99%), Postives = 98/151 (64.90%), Query Frame = 0


Query: 21  MRKQIEEMKGYHLHLVIQKQLEDIDINKKEGRLCLPLNNLLFDFTNHKERELFNNNNNNG 80
           MRKQIE+M GY+L +VI K+L DID+NKK+GR+   + N+ FDF   KE+EL N+ N   
Sbjct: 1   MRKQIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNVFFDFLTPKEKELLNDANG-- 60

Query: 81  INKMERIMEVKILDEAQRETSILLNKSIIGNQYYFSLMGGWSSFVDTNFLRTGNIIQLWS 140
                 +MEVKI+DEAQR + + L K  I     +     W+SFVD N L+ GN+IQLWS
Sbjct: 61  ------VMEVKIVDEAQRVSPMFLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNLIQLWS 120

Query: 141 FRRERLIP-SNRTFVSDLYFALNKVDHRICL 171
           FRR RL+   N  F SDLYFALN +D R  L
Sbjct: 121 FRRVRLVDIDNEIFTSDLYFALNTMDGRCIL 143

[Close]

BLAST of Clc11G13050.1 vs. NCBI nr
Match: XP_022938318.1 (B3 domain-containing protein At2g31420-like [Cucurbita moschata])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-28
Identity = 75/151 (49.67%), Postives = 98/151 (64.90%), Query Frame = 0


Query: 21  MRKQIEEMKGYHLHLVIQKQLEDIDINKKEGRLCLPLNNLLFDFTNHKERELFNNNNNNG 80
           MRK+IE+M GY+L +VI K+L DID+NKK+GR+   + N+ FDF   KE+E+ N+ N   
Sbjct: 1   MRKKIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANG-- 60

Query: 81  INKMERIMEVKILDEAQRETSILLNKSIIGNQYYFSLMGGWSSFVDTNFLRTGNIIQLWS 140
                 ++EVKI+DEAQR + + L K  I     +     W+SFVD N L+ GN+IQLWS
Sbjct: 61  ------VIEVKIVDEAQRVSPMFLTKGKIEEHDVYLFTTHWNSFVDKNCLKFGNLIQLWS 120

Query: 141 FRRERLIP-SNRTFVSDLYFALNKVDHRICL 171
           FRR RLI   N  F SDLYFALN +D R  L
Sbjct: 121 FRRVRLIDIDNEIFTSDLYFALNTMDGRCIL 143

[Close]

BLAST of Clc11G13050.1 vs. ExPASy Swiss-Prot
Match: Q9LRX6 (Putative B3 domain-containing protein At3g24850 OS=Arabidopsis thaliana OX=3702 GN=At3g24850 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.5e-06
Identity = 41/141 (29.08%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 13  TRPDIPSGMRKQIEEMK-GYHLHLVIQKQLEDIDINKKEGRLCLPLNNLL-FDFTNHKE- 72
           T  D P  + K + +MK      L+ +K L   DIN  + RL +P NNLL  DF    E 
Sbjct: 205 TARDTPKWLVKVMRDMKEAKDAKLIFEKTLFVTDINPTQNRLSMPFNNLLQNDFLTSVES 264

Query: 73  ---RELFNNNNNNGINKMERIMEVKILDEAQRETSILLNKSIIGNQ-----YYFSLMGGW 132
              +E  NNN   G+  +       ++D+   +  ++L +  +  +     + ++L+ GW
Sbjct: 265 RIIKEDINNNKKIGVGAI-------LVDQRSVKWGVMLKRWELKKESGKGSWNYNLICGW 324

Query: 133 SSFVDTNFLRTGNIIQLWSFR 143
           +  V+ N L+ G+ I +WSFR
Sbjct: 325 NDVVEANGLKEGDNISVWSFR 338

[Close]

BLAST of Clc11G13050.1 vs. ExPASy Swiss-Prot
Match: Q9FLV7 (B3 domain-containing protein At5g24050 OS=Arabidopsis thaliana OX=3702 GN=At5g24050 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.9e-06
Identity = 42/141 (29.79%), Postives = 67/141 (47.52%), Query Frame = 0


Query: 13  TRPDIPSGMRKQIEEMK-GYHLHLVIQKQLEDIDINKKEGRLCLPLNNLL-FDFTNHKE- 72
           T  + P  + K +  MK      L+ +K L   D+N  + RL +P NNLL  DF    E 
Sbjct: 195 TARETPEWLVKVMTNMKEAKDAKLIFEKTLFVTDVNPTKNRLSMPFNNLLRNDFLTSVES 254

Query: 73  ---RELFNNNNNNGINKMERIMEVKILDEAQRETSILL-----NKSIIGNQYYFSLMGGW 132
               E  NNNN  G+  +       ++D+  ++  ++L      K      + ++L+ GW
Sbjct: 255 IIINEDINNNNKIGVGAI-------LVDQRCKKWGVMLKRWEMKKESGKGSWSYNLICGW 314

Query: 133 SSFVDTNFLRTGNIIQLWSFR 143
           +  V+ N L+ G+ I LWSFR
Sbjct: 315 NDIVEANRLKEGDNITLWSFR 328

[Close]

BLAST of Clc11G13050.1 vs. ExPASy Swiss-Prot
Match: Q5RM09 (B3 domain-containing protein At1g05920 OS=Arabidopsis thaliana OX=3702 GN=At1g05920 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.3e-05
Identity = 41/155 (26.45%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 15  PDIPSGMRKQIEEMKGY-HLHLVIQKQLEDIDINKKEGRLCLPLNNLL-FDFTNHKEREL 74
           P  P  + + +  M G     L+I+K L+  D++ ++ RL +P+N ++  DF    E  L
Sbjct: 161 PQEPQWLLQVMSRMNGAGDPKLIIEKNLDSNDVDPRQNRLSIPINTVIQNDFLTLDESRL 220

Query: 75  FNNNNNNGINKMERIMEVKILDEAQRETSILLNKSII----GNQYY-FSLMGGWSSFVDT 134
            + +       M   +   ++D+  ++ ++   +  +    G+ Y+ F L G WS+ V+T
Sbjct: 221 IDEDEITNEGNMG--VAAFLVDQRTKKWNMGFKQWFMTTDSGSSYWSFVLRGEWSNVVET 280

Query: 135 NFLRTGNIIQLWSFRRE-----RLIPSNRTFVSDL 158
           N L+ G+ I LWSFR        L+P   + V  L
Sbjct: 281 NGLKEGDKISLWSFRSNDILCFALVPPTSSVVESL 313

[Close]

BLAST of Clc11G13050.1 vs. ExPASy Swiss-Prot
Match: Q9LSF7 (B3 domain-containing protein At3g25182 OS=Arabidopsis thaliana OX=3702 GN=At3g25182 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.6e-04
Identity = 37/137 (27.01%), Postives = 67/137 (48.91%), Query Frame = 0


Query: 13  TRPDIPSGMRKQIEEMK-GYHLHLVIQKQLEDIDINKKEGRLCLPLNNLL-FDFTNHKER 72
           T  + P  +   + +MK      L+ +K L   D+N  + RL +P NNLL  DF    E 
Sbjct: 192 TARETPEWLVNVMRDMKEAKDAKLIFEKTLFVTDVNPTQNRLSMPFNNLLRNDFLTSVES 251

Query: 73  ELFNNNNNNGINKMERIMEVKILDEAQRETSILL-----NKSIIGNQYYFSLMGGWSSFV 132
            + + +  N  +K   +  + ++D+  ++  ++L      K      + ++L+ GW+  V
Sbjct: 252 RIIDKDIKN--DKKIGVGAI-LVDQRCKKWGVMLKRWEMKKESGKGSWNYNLICGWNDIV 311

Query: 133 DTNFLRTGNIIQLWSFR 143
           + N L+ G+ I LWSFR
Sbjct: 312 EANGLKEGDNISLWSFR 325

[Close]

BLAST of Clc11G13050.1 vs. ExPASy Swiss-Prot
Match: Q9MA32 (B3 domain-containing protein At1g05930 OS=Arabidopsis thaliana OX=3702 GN=At1g05930 PE=2 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 9.5e-04
Identity = 36/126 (28.57%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 21  MRKQIEEMKGYHLHLVIQKQLEDID-INKKEGRLCLPLNNLLF-DFTNHKERELFNNNNN 80
           +R+ +++M+   L L+++K L   D I    GR  +  N L+  DF   +ER +   +  
Sbjct: 164 LRQVMKDMRAEDLTLILEKTLSTTDVITTTHGRFSMHFNRLISNDFLKPEERSILEEDTY 223

Query: 81  NGINKMERIMEVK--ILDEAQRETSILLNKSIIGNQYYFSLMGGWSSFVDTNFLRTGNII 140
           N     +  M V   ++D+  ++ S++L +   G  Y+ S   GW+  V  N L+ G+ I
Sbjct: 224 N-----DETMGVGAILVDQRSQKWSVILKR--WGQNYFLSC--GWNDVVKANKLKAGDDI 280

Query: 141 QLWSFR 143
            LW+FR
Sbjct: 284 CLWAFR 280

[Close]

BLAST of Clc11G13050.1 vs. ExPASy TrEMBL
Match: A0A6J1FJF6 (B3 domain-containing protein At1g05930-like OS=Cucurbita moschata OX=3662 GN=LOC111444456 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 8.5e-32
Identity = 82/166 (49.40%), Postives = 107/166 (64.46%), Query Frame = 0


Query: 6   QNAIELLTRPDIPSGMRKQIEEMKGYHLHLVIQKQLEDIDINKKEGRLCLPLNNLLFDFT 65
           +NA  L+T PD+P+ MRKQIEEM+GY+L LVI K+L + D+N+K+GRL L +  +LFDF 
Sbjct: 13  RNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFDFI 72

Query: 66  NHKERELFNNNNNNGINKMERIMEVKILDEAQRETSILLNKSIIGNQYYFSLMGGWSSFV 125
              E +L N+ N         +MEVKILDE QR + + L K  I     + L   W+SFV
Sbjct: 73  TPDEEKLLNDANG--------VMEVKILDEGQRVSPMFLTKGKIQEHDAYCLTTHWNSFV 132

Query: 126 DTNFLRTGNIIQLWSFRRERLIP-SNRTFVSDLYFALNKVDHRICL 171
             N L+ G++IQLWSFRR RL+   N  F SDLYFALN +D R  L
Sbjct: 133 AKNCLKIGHLIQLWSFRRVRLVDIENEIFTSDLYFALNTMDGRCFL 170

[Close]

BLAST of Clc11G13050.1 vs. ExPASy TrEMBL
Match: A0A6J1I325 (B3 domain-containing protein At2g31420-like OS=Cucurbita maxima OX=3661 GN=LOC111468568 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 6.1e-30
Identity = 77/151 (50.99%), Postives = 98/151 (64.90%), Query Frame = 0


Query: 21  MRKQIEEMKGYHLHLVIQKQLEDIDINKKEGRLCLPLNNLLFDFTNHKERELFNNNNNNG 80
           MRKQIE+M GY+L +VI K+L DID+NKK+GR+   + N+ FDF   KE+EL N+ N   
Sbjct: 1   MRKQIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNVFFDFLTPKEKELLNDANG-- 60

Query: 81  INKMERIMEVKILDEAQRETSILLNKSIIGNQYYFSLMGGWSSFVDTNFLRTGNIIQLWS 140
                 +MEVKI+DEAQR + + L K  I     +     W+SFVD N L+ GN+IQLWS
Sbjct: 61  ------VMEVKIVDEAQRVSPMFLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNLIQLWS 120

Query: 141 FRRERLIP-SNRTFVSDLYFALNKVDHRICL 171
           FRR RL+   N  F SDLYFALN +D R  L
Sbjct: 121 FRRVRLVDIDNEIFTSDLYFALNTMDGRCIL 143

[Close]

BLAST of Clc11G13050.1 vs. ExPASy TrEMBL
Match: A0A6J1FIJ8 (B3 domain-containing protein At2g31420-like OS=Cucurbita moschata OX=3662 GN=LOC111444455 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 5.2e-29
Identity = 75/151 (49.67%), Postives = 98/151 (64.90%), Query Frame = 0


Query: 21  MRKQIEEMKGYHLHLVIQKQLEDIDINKKEGRLCLPLNNLLFDFTNHKERELFNNNNNNG 80
           MRK+IE+M GY+L +VI K+L DID+NKK+GR+   + N+ FDF   KE+E+ N+ N   
Sbjct: 1   MRKKIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANG-- 60

Query: 81  INKMERIMEVKILDEAQRETSILLNKSIIGNQYYFSLMGGWSSFVDTNFLRTGNIIQLWS 140
                 ++EVKI+DEAQR + + L K  I     +     W+SFVD N L+ GN+IQLWS
Sbjct: 61  ------VIEVKIVDEAQRVSPMFLTKGKIEEHDVYLFTTHWNSFVDKNCLKFGNLIQLWS 120

Query: 141 FRRERLIP-SNRTFVSDLYFALNKVDHRICL 171
           FRR RLI   N  F SDLYFALN +D R  L
Sbjct: 121 FRRVRLIDIDNEIFTSDLYFALNTMDGRCIL 143

[Close]

BLAST of Clc11G13050.1 vs. ExPASy TrEMBL
Match: A0A6J1FDQ3 (B3 domain-containing protein At2g31420-like OS=Cucurbita moschata OX=3662 GN=LOC111444454 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 76/155 (49.03%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 17  IPSGMRKQIEEMKGYHLHLVIQKQLEDIDINKKEGRLCLPLNNLLFDFTNHKERELFNNN 76
           +P+ MRKQIE+M GY+L LVI K+L + D+N+K GRL   +  + FDF    E+EL N+ 
Sbjct: 1   MPTEMRKQIEDMHGYNLQLVIHKRLIEADMNEK-GRLFFRIKKMFFDFLTPNEKELLNDA 60

Query: 77  NNNGINKMERIMEVKILDEAQRETSILLNKSIIGNQYYFSLMGGWSSFVDTNFLRTGNII 136
           N         +MEVKI+DEAQR + + L K  I +Q  +     W+SFVD N L+ G++I
Sbjct: 61  NG--------VMEVKIVDEAQRVSPMFLTKGKIKDQDVYFFTTHWNSFVDKNCLKLGHLI 120

Query: 137 QLWSFRRERLIP-SNRTFVSDLYFALNKVDHRICL 171
           QLWSFRR RL+   N  F SDLYFALN VD R  L
Sbjct: 121 QLWSFRRVRLVDIDNEIFTSDLYFALNTVDGRCIL 146

[Close]

BLAST of Clc11G13050.1 vs. ExPASy TrEMBL
Match: A0A6J1H5Z0 (putative B3 domain-containing protein At3g24850 OS=Cucurbita moschata OX=3662 GN=LOC111460418 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 64/153 (41.83%), Postives = 89/153 (58.17%), Query Frame = 0


Query: 13  TRPDIPSGMRKQIEEMKGYHLHLVIQKQLEDIDINKKEGRLCLPLNNLLFDFTNHKEREL 72
           T PD+P+ MR +I EM  Y + L IQKQL+D D+NK  GRL  P   L  DF   +ER +
Sbjct: 108 TTPDMPAAMRDRIGEMGAYQIQLAIQKQLQDTDMNKNHGRLSFPAKKLKVDFATEEERRV 167

Query: 73  FNNNNNNGINKMERIMEVKILDEAQRETSILLNKSIIGNQYYFSLMGGWSSFVDTNFLRT 132
                N G    ++ M V I+D   RE+SI L    IG+   + LM  W+S V+ N  ++
Sbjct: 168 LKQQENKG----KKGMNVMIVDPLLRESSICLKLWKIGSGDSYCLMTQWNSLVEQNGFKS 227

Query: 133 GNIIQLWSFRRERLIPSNRTFVSDLYFALNKVD 166
           G+ +QLWSFR++ L    +T VS L FA+ K+D
Sbjct: 228 GDHVQLWSFRKDELEAETQTMVSRLCFAMVKLD 256

[Close]

BLAST of Clc11G13050.1 vs. TAIR 10
Match: AT3G24850.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 52.8 bits (125), Expect = 3.2e-07
Identity = 41/141 (29.08%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 13  TRPDIPSGMRKQIEEMK-GYHLHLVIQKQLEDIDINKKEGRLCLPLNNLL-FDFTNHKE- 72
           T  D P  + K + +MK      L+ +K L   DIN  + RL +P NNLL  DF    E 
Sbjct: 205 TARDTPKWLVKVMRDMKEAKDAKLIFEKTLFVTDINPTQNRLSMPFNNLLQNDFLTSVES 264

Query: 73  ---RELFNNNNNNGINKMERIMEVKILDEAQRETSILLNKSIIGNQ-----YYFSLMGGW 132
              +E  NNN   G+  +       ++D+   +  ++L +  +  +     + ++L+ GW
Sbjct: 265 RIIKEDINNNKKIGVGAI-------LVDQRSVKWGVMLKRWELKKESGKGSWNYNLICGW 324

Query: 133 SSFVDTNFLRTGNIIQLWSFR 143
           +  V+ N L+ G+ I +WSFR
Sbjct: 325 NDVVEANGLKEGDNISVWSFR 338

[Close]

BLAST of Clc11G13050.1 vs. TAIR 10
Match: AT5G24050.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 52.4 bits (124), Expect = 4.2e-07
Identity = 42/141 (29.79%), Postives = 67/141 (47.52%), Query Frame = 0


Query: 13  TRPDIPSGMRKQIEEMK-GYHLHLVIQKQLEDIDINKKEGRLCLPLNNLL-FDFTNHKE- 72
           T  + P  + K +  MK      L+ +K L   D+N  + RL +P NNLL  DF    E 
Sbjct: 195 TARETPEWLVKVMTNMKEAKDAKLIFEKTLFVTDVNPTKNRLSMPFNNLLRNDFLTSVES 254

Query: 73  ---RELFNNNNNNGINKMERIMEVKILDEAQRETSILL-----NKSIIGNQYYFSLMGGW 132
               E  NNNN  G+  +       ++D+  ++  ++L      K      + ++L+ GW
Sbjct: 255 IIINEDINNNNKIGVGAI-------LVDQRCKKWGVMLKRWEMKKESGKGSWSYNLICGW 314

Query: 133 SSFVDTNFLRTGNIIQLWSFR 143
           +  V+ N L+ G+ I LWSFR
Sbjct: 315 NDIVEANRLKEGDNITLWSFR 328

[Close]

BLAST of Clc11G13050.1 vs. TAIR 10
Match: AT1G05920.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-06
Identity = 41/155 (26.45%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 15  PDIPSGMRKQIEEMKGY-HLHLVIQKQLEDIDINKKEGRLCLPLNNLL-FDFTNHKEREL 74
           P  P  + + +  M G     L+I+K L+  D++ ++ RL +P+N ++  DF    E  L
Sbjct: 161 PQEPQWLLQVMSRMNGAGDPKLIIEKNLDSNDVDPRQNRLSIPINTVIQNDFLTLDESRL 220

Query: 75  FNNNNNNGINKMERIMEVKILDEAQRETSILLNKSII----GNQYY-FSLMGGWSSFVDT 134
            + +       M   +   ++D+  ++ ++   +  +    G+ Y+ F L G WS+ V+T
Sbjct: 221 IDEDEITNEGNMG--VAAFLVDQRTKKWNMGFKQWFMTTDSGSSYWSFVLRGEWSNVVET 280

Query: 135 NFLRTGNIIQLWSFRRE-----RLIPSNRTFVSDL 158
           N L+ G+ I LWSFR        L+P   + V  L
Sbjct: 281 NGLKEGDKISLWSFRSNDILCFALVPPTSSVVESL 313

[Close]

BLAST of Clc11G13050.1 vs. TAIR 10
Match: AT1G05930.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 45.1 bits (105), Expect = 6.7e-05
Identity = 36/126 (28.57%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 21  MRKQIEEMKGYHLHLVIQKQLEDID-INKKEGRLCLPLNNLLF-DFTNHKERELFNNNNN 80
           +R+ +++M+   L L+++K L   D I    GR  +  N L+  DF   +ER +   +  
Sbjct: 164 LRQVMKDMRAEDLTLILEKTLSTTDVITTTHGRFSMHFNRLISNDFLKPEERSILEEDTY 223

Query: 81  NGINKMERIMEVK--ILDEAQRETSILLNKSIIGNQYYFSLMGGWSSFVDTNFLRTGNII 140
           N     +  M V   ++D+  ++ S++L +   G  Y+ S   GW+  V  N L+ G+ I
Sbjct: 224 N-----DETMGVGAILVDQRSQKWSVILKR--WGQNYFLSC--GWNDVVKANKLKAGDDI 280

Query: 141 QLWSFR 143
            LW+FR
Sbjct: 284 CLWAFR 280

The following BLAST results are available for this feature:

BLAST of Clc11G13050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586099.1	2.1e-32	47.93	hypothetical protein SDJN03_18832, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938320.1	1.8e-31	49.40	B3 domain-containing protein At1g05930-like [Cucurbita moschata]	[more]
KAG6586098.1	2.5e-30	48.80	hypothetical protein SDJN03_18831, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022969589.1	1.3e-29	50.99	B3 domain-containing protein At2g31420-like [Cucurbita maxima]	[more]
XP_022938318.1	1.1e-28	49.67	B3 domain-containing protein At2g31420-like [Cucurbita moschata]	[more]

BLAST of Clc11G13050.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRX6	4.5e-06	29.08	Putative B3 domain-containing protein At3g24850 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9FLV7	5.9e-06	29.79	B3 domain-containing protein At5g24050 OS=Arabidopsis thaliana OX=3702 GN=At5g24...	[more]
Q5RM09	2.3e-05	26.45	B3 domain-containing protein At1g05920 OS=Arabidopsis thaliana OX=3702 GN=At1g05...	[more]
Q9LSF7	5.6e-04	27.01	B3 domain-containing protein At3g25182 OS=Arabidopsis thaliana OX=3702 GN=At3g25...	[more]
Q9MA32	9.5e-04	28.57	B3 domain-containing protein At1g05930 OS=Arabidopsis thaliana OX=3702 GN=At1g05...	[more]

BLAST of Clc11G13050.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJF6	8.5e-32	49.40	B3 domain-containing protein At1g05930-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1I325	6.1e-30	50.99	B3 domain-containing protein At2g31420-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FIJ8	5.2e-29	49.67	B3 domain-containing protein At2g31420-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1FDQ3	1.3e-27	49.03	B3 domain-containing protein At2g31420-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1H5Z0	1.2e-22	41.83	putative B3 domain-containing protein At3g24850 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Clc11G13050.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24850.1	3.2e-07	29.08	Domain of unknown function (DUF313)	[more]
AT5G24050.1	4.2e-07	29.79	Domain of unknown function (DUF313)	[more]
AT1G05920.1	1.6e-06	26.45	Domain of unknown function (DUF313)	[more]
AT1G05930.1	6.7e-05	28.57	Domain of unknown function (DUF313)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005508	B3 domain-containing protein At2g31720-like	PFAM	PF03754	DUF313	coord: 18..126 e-value: 1.7E-9 score: 37.9
IPR005508	B3 domain-containing protein At2g31720-like	PANTHER	PTHR31541	B3 DOMAIN PLANT PROTEIN-RELATED	coord: 13..165
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 27..154 e-value: 1.6E-9 score: 39.5
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 38..143
None	No IPR available	PANTHER	PTHR31541:SF25	DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED	coord: 13..165

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc11G13050	Clc11G13050	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G13050.1-exon	Clc11G13050.1-exon-ClcChr11:23227571..23228083	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G13050.1-cds	Clc11G13050.1-cds-ClcChr11:23227571..23228083	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc11G13050.1	Clc11G13050.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding