Clc11G08380.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc11G08380.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr11: 8640705 .. 8640911 (+)
Sequence length	207
RNA-Seq Expression	Clc11G08380.1
Synteny	Clc11G08380.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCTGCGCGAGCAGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGTGA

mRNA sequence

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCTGCGCGAGCAGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGTGA

Coding sequence (CDS)

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCTGCGCGAGCAGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGTGA

Protein sequence

MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGSSARFVHGG

Homology

[Close]

BLAST of Clc11G08380.1 vs. NCBI nr
Match: KYP43984.1 (hypothetical protein KK1_034569 [Cajanus cajan])

HSP 1 Score: 126.3 bits (316), Expect = 9.9e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGERSALEG TCASSGGRSGSENVGLSNAN+GENPMPRKPKGS
Sbjct: 29 MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 88

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 89 SARFVHGG 96

[Close]

BLAST of Clc11G08380.1 vs. NCBI nr
Match: KYP38298.1 (hypothetical protein KK1_040460 [Cajanus cajan] >KYP70014.1 hypothetical protein KK1_009222 [Cajanus cajan])

HSP 1 Score: 126.3 bits (316), Expect = 9.9e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGERSALEG TCASSGGRSGSENVGLSNAN+GENPMPRKPKGS
Sbjct: 29 MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 88

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 89 SARFVHGG 96

[Close]

BLAST of Clc11G08380.1 vs. NCBI nr
Match: KYP38300.1 (hypothetical protein KK1_040463 [Cajanus cajan] >KYP38304.1 hypothetical protein KK1_040467 [Cajanus cajan])

HSP 1 Score: 126.3 bits (316), Expect = 9.9e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGERSALEG TCASSGGRSGSENVGLSNAN+GENPMPRKPKGS
Sbjct: 1  MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 60

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 61 SARFVHGG 68

[Close]

BLAST of Clc11G08380.1 vs. NCBI nr
Match: KAG6621045.1 (hypothetical protein I3842_Q035900 [Carya illinoinensis])

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCK ASVGERSAL GSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1  MNGAKRSAEAVGCKKASVGERSALGGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 61 SARFVHGG 68

[Close]

BLAST of Clc11G08380.1 vs. NCBI nr
Match: KAF2282338.1 (hypothetical protein GH714_043867 [Hevea brasiliensis])

HSP 1 Score: 124.4 bits (311), Expect = 3.8e-25
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
          MNG KRSAEAVGCKNASVGERSALEGST ASSGGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1  MNGVKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 61 SARFVHGG 68

[Close]

BLAST of Clc11G08380.1 vs. ExPASy TrEMBL
Match: A0A151TSK6 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_009222 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGERSALEG TCASSGGRSGSENVGLSNAN+GENPMPRKPKGS
Sbjct: 29 MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 88

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 89 SARFVHGG 96

[Close]

BLAST of Clc11G08380.1 vs. ExPASy TrEMBL
Match: A0A151R6Q7 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040463 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGERSALEG TCASSGGRSGSENVGLSNAN+GENPMPRKPKGS
Sbjct: 1  MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 60

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 61 SARFVHGG 68

[Close]

BLAST of Clc11G08380.1 vs. ExPASy TrEMBL
Match: A0A151RN55 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_034569 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGERSALEG TCASSGGRSGSENVGLSNAN+GENPMPRKPKGS
Sbjct: 29 MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 88

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 89 SARFVHGG 96

[Close]

BLAST of Clc11G08380.1 vs. ExPASy TrEMBL
Match: A0A6A6K2E6 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_043867 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
          MNG KRSAEAVGCKNASVGERSALEGST ASSGGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1  MNGVKRSAEAVGCKNASVGERSALEGSTRASSGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 61 SARFVHGG 68

[Close]

BLAST of Clc11G08380.1 vs. ExPASy TrEMBL
Match: A0A151R6X5 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040453 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.9e-25
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGERSA EG TC SSGGRSGSENVGLSNAN+GENPMPRKPKGS
Sbjct: 1  MNGAKRSAEAVGCKNESVGERSASEGRTCTSSGGRSGSENVGLSNANVGENPMPRKPKGS 60

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 61 SARFVHGG 68

The following BLAST results are available for this feature:

BLAST of Clc11G08380.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KYP43984.1	9.9e-26	95.59	hypothetical protein KK1_034569 [Cajanus cajan]	[more]
KYP38298.1	9.9e-26	95.59	hypothetical protein KK1_040460 [Cajanus cajan] >KYP70014.1 hypothetical protein...	[more]
KYP38300.1	9.9e-26	95.59	hypothetical protein KK1_040463 [Cajanus cajan] >KYP38304.1 hypothetical protein...	[more]
KAG6621045.1	1.7e-25	97.06	hypothetical protein I3842_Q035900 [Carya illinoinensis]	[more]
KAF2282338.1	3.8e-25	97.06	hypothetical protein GH714_043867 [Hevea brasiliensis]	[more]

BLAST of Clc11G08380.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G08380.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A151TSK6	4.8e-26	95.59	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_009222 PE=4 SV=1	[more]
A0A151R6Q7	4.8e-26	95.59	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040463 PE=4 SV=1	[more]
A0A151RN55	4.8e-26	95.59	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_034569 PE=4 SV=1	[more]
A0A6A6K2E6	1.8e-25	97.06	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_043867 PE=4 SV=1	[more]
A0A151R6X5	6.9e-25	92.65	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040453 PE=4 SV=1	[more]

BLAST of Clc11G08380.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..47

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc11G08380	Clc11G08380	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G08380.1-exon	Clc11G08380.1-exon-ClcChr11:8640705..8640911	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G08380.1-cds	Clc11G08380.1-cds-ClcChr11:8640705..8640911	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc11G08380.1	Clc11G08380.1-protein	polypeptide