Clc11G08030.2 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc11G08030.2
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed RNA polymerase subunit beta'
Location	ClcChr11: 7832883 .. 7834368 (-)
Sequence length	945
RNA-Seq Expression	Clc11G08030.2
Synteny	Clc11G08030.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGAAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCATGTACTTGGAAACCTCCTATTTGCCAATACAAATGTTGGCCGACTTCCACACCAGATATATCGTATAACCCTTTTTGTGTGTTGATAGAACATAATAGAATATTCATATTGCCCTCTGAAAGAAATAGAACTGTAAAACAAATTATTTTGATTCAAGAGGCCCTTAATGAAATTTCTTAATAGGAACTACACCCATTAAAAATTTCTTTGGTTAGCTAATATATTTTGTCTAATAACGTACAAATATATATGATCAGGGATACTTCCAGCAAGAAATATATCGACGAGTTAGTGTCGGGTTAGCCGAAAATCAAAGTTTATCAGAAGCTTGGTCTAAAATTCCTGAAAAATTAGCTTTTTATGATTATATCGGGAATAATCCCGCAAAAGGTGGATTATTCAGAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTTAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGAAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGTATCCCATATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAAGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGCTTTTGATCCAAACGCACCTCGGTACTTCCATCCGCCATCAACAGGCCTAAGCAGGCCTAGTAGCTTTCATATTCCCGTATGA

mRNA sequence

ATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGAAGGTAGGGGTGCAGAGACAGCCAGGAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTTAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGAAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGTATCCCATATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAAGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGCTATTGGCTTTTGATCCAAACGCACCTCGGTACTTCCATCCGCCATCAACAGGCCTAAGCAGGCCTAGTAGCTTTCATATTCCCGTATGA

Coding sequence (CDS)

ATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGAAGGTAGGGGTGCAGAGACAGCCAGGAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGCTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTTAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGAAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGTATCCCATATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAAGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGCTATTGGCTTTTGATCCAAACGCACCTCGGTACTTCCATCCGCCATCAACAGGCCTAAGCAGGCCTAGTAGCTTTCATATTCCCGTATGA

Protein sequence

MGDKLHRREGNSPDHQLRPLNDRSVIKKVGVQRQPGEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYLGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWEILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAELLAFDPNAPRYFHPPSTGLSRPSSFHIPV

Homology

[Close]

BLAST of Clc11G08030.2 vs. NCBI nr
Match: AHM88912.1 (RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 499.2 bits (1284), Expect = 2.6e-137
Identity = 245/249 (98.39%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Clc11G08030.2 vs. NCBI nr
Match: ASY96794.1 (RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97316.1 RNA polymerase beta' subunit [Cucumis melo var. flexuosus] >ASY97055.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97229.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo])

HSP 1 Score: 499.2 bits (1284), Expect = 2.6e-137
Identity = 245/249 (98.39%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 261 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 320

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 321 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 380

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 381 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 440

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 441 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 500

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 501 PLSLEAQAE 509

[Close]

BLAST of Clc11G08030.2 vs. NCBI nr
Match: AHM88970.1 (RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 499.2 bits (1284), Expect = 2.6e-137
Identity = 245/249 (98.39%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Clc11G08030.2 vs. NCBI nr
Match: YP_009560826.1 (RpoC1 [Trichosanthes kirilowii] >YP_009752403.1 RNA polymerase beta' subunit [Trichosanthes tricuspidata] >YP_009753696.1 RNA polymerase beta' subunit [Trichosanthes nervifolia] >QAB33258.1 RpoC1 [Trichosanthes kirilowii] >QIT04799.1 RNA polymerase beta' subunit [Trichosanthes tricuspidata] >QIT05307.1 RNA polymerase beta' subunit [Trichosanthes nervifolia])

HSP 1 Score: 499.2 bits (1284), Expect = 2.6e-137
Identity = 245/249 (98.39%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Clc11G08030.2 vs. NCBI nr
Match: AHM91152.1 (RNA polymerase beta, partial [Lagenaria siceraria])

HSP 1 Score: 499.2 bits (1284), Expect = 2.6e-137
Identity = 245/249 (98.39%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Clc11G08030.2 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 499.2 bits (1284), Expect = 3.4e-140
Identity = 245/249 (98.39%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Clc11G08030.2 vs. ExPASy Swiss-Prot
Match: Q8HVY4 (DNA-directed RNA polymerase subunit beta' OS=Glycine max OX=3847 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 496.9 bits (1278), Expect = 1.7e-139
Identity = 242/249 (97.19%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 262 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 321

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSD+IEGKEGRFRETLLGKRVDY 
Sbjct: 322 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYS 381

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR+HFASNIG+AKSKIR+KEPIVWE
Sbjct: 382 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGIAKSKIREKEPIVWE 441

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 442 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 501

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 502 PLSLEAQAE 510

[Close]

BLAST of Clc11G08030.2 vs. ExPASy Swiss-Prot
Match: Q09X26 (DNA-directed RNA polymerase subunit beta' OS=Morus indica OX=248361 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 3.2e-138
Identity = 239/249 (95.98%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTL DNGIRGQPMRDGHNKVYKSFSD+IEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIR+KEP+VWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQ+VMQG+P+LLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQDVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Clc11G08030.2 vs. ExPASy Swiss-Prot
Match: Q9BBS8 (DNA-directed RNA polymerase subunit beta' OS=Lotus japonicus OX=34305 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 4.1e-138
Identity = 240/249 (96.39%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 262 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 321

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPM+DGHNKVYKSFSD+IEGKEGRFRETLLGKRVDY 
Sbjct: 322 LVMCQEKLVQEAVDTLLDNGIRGQPMKDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYS 381

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIR LIR+HFASNIGVAKSKIR+KEPIVWE
Sbjct: 382 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRSLIRKHFASNIGVAKSKIREKEPIVWE 441

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVM+G+PILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMA+HV
Sbjct: 442 ILQEVMRGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAIHV 501

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 502 PLSLEAQAE 510

[Close]

BLAST of Clc11G08030.2 vs. ExPASy Swiss-Prot
Match: Q8S8Y0 (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 491.9 bits (1265), Expect = 5.4e-138
Identity = 240/249 (96.39%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQ E
Sbjct: 500 PLSLEAQVE 508

[Close]

BLAST of Clc11G08030.2 vs. ExPASy TrEMBL
Match: A0A218KG20 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.3e-137
Identity = 245/249 (98.39%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Clc11G08030.2 vs. ExPASy TrEMBL
Match: A0A6M3S6B8 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.3e-137
Identity = 245/249 (98.39%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 261 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 320

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 321 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 380

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 381 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 440

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 441 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 500

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 501 PLSLEAQAE 509

[Close]

BLAST of Clc11G08030.2 vs. ExPASy TrEMBL
Match: A0A1X9Q1T5 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.3e-137
Identity = 245/249 (98.39%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Clc11G08030.2 vs. ExPASy TrEMBL
Match: A0A249RZJ2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.3e-137
Identity = 245/249 (98.39%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 261 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 320

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 321 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 380

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 381 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 440

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 441 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 500

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 501 PLSLEAQAE 509

[Close]

BLAST of Clc11G08030.2 vs. ExPASy TrEMBL
Match: A0A1P8LE65 (DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.3e-137
Identity = 245/249 (98.39%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE
Sbjct: 261 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 320

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 321 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 380

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIR+KEPIVWE
Sbjct: 381 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWE 440

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 441 ILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 500

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 501 PLSLEAQAE 509

[Close]

BLAST of Clc11G08030.2 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 486.5 bits (1251), Expect = 1.6e-137
Identity = 237/249 (95.18%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 37  EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGE 96
           EPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGE
Sbjct: 260 EPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 319

Query: 97  LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 156
           LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDY 
Sbjct: 320 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 379

Query: 157 GRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIRKKEPIVWE 216
           GRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKS+IR+K+PIVWE
Sbjct: 380 GRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWE 439

Query: 217 ILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHV 276
           ILQEVMQG+P+LLNRAPTLHRLGIQ+FQPILVEGR ICLHPLVCKGFNADFDGDQMAVHV
Sbjct: 440 ILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHV 499

Query: 277 PLSLEAQAE 286
           PLSLEAQAE
Sbjct: 500 PLSLEAQAE 508

[Close]

BLAST of Clc11G08030.2 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 122.9 bits (307), Expect = 4.7e-28
Identity = 91/328 (27.74%), Postives = 149/328 (45.43%), Query Frame = 0


Query: 4   KLHRREGNSPDHQLRPLN-------DR--SVIKKV--------GVQRQPGEPEWMVLCLL 63
           K+ R++ + PD    P         DR  SV+K++        G   +   P+WM+L +L
Sbjct: 191 KIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFARPDWMILEVL 250

Query: 64  PVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQ 123
           P+ PP +RP + +D       D+      +I  N  L          P  ++    +L+Q
Sbjct: 251 PIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENL--KRQEKNGAPAHIISEFTQLLQ 310

Query: 124 EAVDTLLDNGIRGQP-MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYLGRSVIVVGP 183
             + T  DN + GQP       +  KS    ++ KEGR R  L+GKRVD+  R+VI   P
Sbjct: 311 FHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 370

Query: 184 SLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQHFASNIGVAKSKIR------- 243
           ++++   G+P  IA+ L        +    ++ L+    H       AK  IR       
Sbjct: 371 TINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLD 430

Query: 244 ----KKE-----PIVWEILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLV 288
               KK       + +++ + +  G  +L NR P+LH++ I   +  ++      L+  V
Sbjct: 431 LRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSV 490

[Close]

BLAST of Clc11G08030.2 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-23
Identity = 76/275 (27.64%), Postives = 133/275 (48.36%), Query Frame = 0


Query: 38  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 97
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 250 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 309

Query: 98  VMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 157
            +     VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV++ 
Sbjct: 310 QVWD--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFT 369

Query: 158 GRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN---- 217
           GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N    
Sbjct: 370 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 429

Query: 218 -------IGVAKSKIRKKEPIVWEILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRA 277
                  +G  + +I  +  I   + + + +G  +L NR P+LHR+ I   +  ++  R 
Sbjct: 430 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 489

Query: 278 ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAELL 288
           +  +  VC  +NADFDGD+M +HVP + EA+ E +
Sbjct: 490 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAI 520

[Close]

BLAST of Clc11G08030.2 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-23
Identity = 76/275 (27.64%), Postives = 133/275 (48.36%), Query Frame = 0


Query: 38  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 97
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 260 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 319

Query: 98  VMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYL 157
            +     VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV++ 
Sbjct: 320 QVWD--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFT 379

Query: 158 GRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN---- 217
           GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N    
Sbjct: 380 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 439

Query: 218 -------IGVAKSKIRKKEPIVWEILQEVMQGYPILLNRAPTLHRLGIQAFQPILVEGRA 277
                  +G  + +I  +  I   + + + +G  +L NR P+LHR+ I   +  ++  R 
Sbjct: 440 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 499

Query: 278 ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAELL 288
           +  +  VC  +NADFDGD+M +HVP + EA+ E +
Sbjct: 500 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAI 530

[Close]

BLAST of Clc11G08030.2 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-15
Identity = 68/267 (25.47%), Postives = 123/267 (46.07%), Query Frame = 0


Query: 43  LCLLPVLPPELRP---IIQIDGGKLMSSDINELYRRVI-YRNNTLIDLLTTSRSTPGELV 102
           L   PV P   R    + Q +G +L+  +   +Y++++ +  NTL             ++
Sbjct: 220 LTSFPVTPNGYRVTEIVHQFNGARLIFDERTRIYKKLVGFEGNTL--------ELSSRVM 279

Query: 103 MCQE--KLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRF-RETLLGKRVDY 162
            C +  +L  E V +  D+              Y+  SD  +    RF ++ LLGKR D+
Sbjct: 280 ECMQYSRLFSETVSSSKDSA-----------NPYQKKSDTPKLCGLRFMKDVLLGKRSDH 339

Query: 163 LGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN-----IGVAKSKIRKK 222
             R+V+V  PSL L+  G+P  IA  L  +  +    ++   ++     +   +  +R+ 
Sbjct: 340 TFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVPTLLDNKEMHVRRG 399

Query: 223 EPIVW----------EILQEVMQGYPILLNRAPTLHRLGIQAFQ-PILVEGRAICLHPLV 282
           + +V           +I + +M G  +L+NR P++H+  + A    IL     + L+P+ 
Sbjct: 400 DRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPIC 459

Query: 283 CKGFNADFDGDQMAVHVPLSLEAQAEL 287
           C  F  DFDGD +  +VP S++A+ EL
Sbjct: 460 CLPFRGDFDGDCLHGYVPQSIQAKVEL 467

The following BLAST results are available for this feature:

BLAST of Clc11G08030.2 vs. NCBI nr


Match Name	E-value	Identity	Description
AHM88912.1	2.6e-137	98.39	RNA polymerase beta [Lagenaria siceraria]	[more]
ASY96794.1	2.6e-137	98.39	RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polym...	[more]
AHM88970.1	2.6e-137	98.39	RNA polymerase beta [Lagenaria siceraria]	[more]
YP_009560826.1	2.6e-137	98.39	RpoC1 [Trichosanthes kirilowii] >YP_009752403.1 RNA polymerase beta' subunit [Tr...	[more]
AHM91152.1	2.6e-137	98.39	RNA polymerase beta, partial [Lagenaria siceraria]	[more]

BLAST of Clc11G08030.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP2	3.4e-140	98.39	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
Q8HVY4	1.7e-139	97.19	DNA-directed RNA polymerase subunit beta' OS=Glycine max OX=3847 GN=rpoC1 PE=3 S...	[more]
Q09X26	3.2e-138	95.98	DNA-directed RNA polymerase subunit beta' OS=Morus indica OX=248361 GN=rpoC1 PE=...	[more]
Q9BBS8	4.1e-138	96.39	DNA-directed RNA polymerase subunit beta' OS=Lotus japonicus OX=34305 GN=rpoC1 P...	[more]
Q8S8Y0	5.4e-138	96.39	DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1...	[more]

BLAST of Clc11G08030.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG20	1.3e-137	98.39	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=...	[more]
A0A6M3S6B8	1.3e-137	98.39	DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=...	[more]
A0A1X9Q1T5	1.3e-137	98.39	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
A0A249RZJ2	1.3e-137	98.39	DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=...	[more]
A0A1P8LE65	1.3e-137	98.39	DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 G...	[more]

BLAST of Clc11G08030.2 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	1.6e-137	95.18	DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	4.7e-28	27.74	RNA polymerase II large subunit	[more]
AT5G60040.1	2.0e-23	27.64	nuclear RNA polymerase C1	[more]
AT5G60040.2	2.0e-23	27.64	nuclear RNA polymerase C1	[more]
AT1G63020.1	2.7e-15	25.47	nuclear RNA polymerase D1A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 39..305 e-value: 1.3E-120 score: 416.7
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 150..197 e-value: 7.1E-7 score: 29.6 coord: 204..287 e-value: 4.2E-25 score: 88.9
None	No IPR available	GENE3D	2.40.40.20		coord: 141..299 e-value: 2.9E-39 score: 136.0
None	No IPR available	GENE3D	1.10.40.90		coord: 178..220 e-value: 1.4E-16 score: 62.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR19376:SF54	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'	coord: 33..285
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 33..285
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 31..288
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 26..148 e-value: 8.6E-33 score: 114.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc11G08030	Clc11G08030	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G08030.2-exon	Clc11G08030.2-exon-ClcChr11:7832883..7832972	exon
Clc11G08030.2-exon	Clc11G08030.2-exon-ClcChr11:7833016..7833761	exon
Clc11G08030.2-exon	Clc11G08030.2-exon-ClcChr11:7834260..7834368	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G08030.2-cds	Clc11G08030.2-cds-ClcChr11:7832883..7832972	CDS
Clc11G08030.2-cds	Clc11G08030.2-cds-ClcChr11:7833016..7833761	CDS
Clc11G08030.2-cds	Clc11G08030.2-cds-ClcChr11:7834260..7834368	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc11G08030.2	Clc11G08030.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0008270	zinc ion binding