Clc11G07715.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc11G07715.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein Ycf2
Location	ClcChr11: 7736687 .. 7737584 (-)
Sequence length	525
RNA-Seq Expression	Clc11G07715.1
Synteny	Clc11G07715.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATTGCCGGAATAGCCGATCTAATATCAGTATACCAGTAATACTCCAGCTCAGTGAATGTTTCAAACTTGGGAGGACATATGCGCGGGTTCAAAGTTTTTGTCGCCGTTAAAGTCGAGAGAGAAGTCTCTAAAGCCGCTATGGTCTGGGCTCTCACTCACGTCGTCCGTCCTGGGGACTCTATTACGCTGCTCGCCCTATTAGCTAGCCGGCGGCAACCGTGGAAATTCATTAATTTCAGCCTGTCTCGGGTTCTCTATTGCCCTCGACCCGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCGCTCATTTTGACCACTTTATCATATTATCATATTTTATCATACTAATTTCTACTCTACCTTCTCGGAGTTCATTCTCCAGAGAACTCCATTTTAAGCATTCCGCTGGATTCTTTCCAATCTTCTTATTTTATGATCTCATTGGAAATCATATAAAGACAATTTCTAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTAAGACGAAGAGAGGGGTCTATCTATTTTATTTAGTTATTCAGTTAAACCAATGATTCGTTATTGTAACAGATAGCAACAACCATTTCATCCGGCATGCGTATTTTTGA

mRNA sequence

ATGGATAATTGCCGGAATAGCCGATCTAATATCAGTATACCACTAGCCGGCGGCAACCGTGGAAATTCATTAATTTCAGCCTGTCTCGGGTTCTCTATTGCCCTCGACCCGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCGCTCATTTTGACCACTTTATCATATTATCATATTTTATCATACTAATTTCTACTCTACCTTCTCGGAGTTCATTCTCCAGAGAACTCCATTTTAAGCATTCCGCTGGATTCTTTCCAATCTTCTTATTTTATGATCTCATTGGAAATCATATAAAGACAATTTCTAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAATAGCAACAACCATTTCATCCGGCATGCGTATTTTTGA

Coding sequence (CDS)

ATGGATAATTGCCGGAATAGCCGATCTAATATCAGTATACCACTAGCCGGCGGCAACCGTGGAAATTCATTAATTTCAGCCTGTCTCGGGTTCTCTATTGCCCTCGACCCGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCGCTCATTTTGACCACTTTATCATATTATCATATTTTATCATACTAATTTCTACTCTACCTTCTCGGAGTTCATTCTCCAGAGAACTCCATTTTAAGCATTCCGCTGGATTCTTTCCAATCTTCTTATTTTATGATCTCATTGGAAATCATATAAAGACAATTTCTAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAATAGCAACAACCATTTCATCCGGCATGCGTATTTTTGA

Protein sequence

MDNCRNSRSNISIPLAGGNRGNSLISACLGFSIALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGAHFDHFIILSYFIILISTLPSRSSFSRELHFKHSAGFFPIFLFYDLIGNHIKTISSSPSRKRWILGAVRIDPCSAVANALNSNNHFIRHAYF

Homology

[Close]

BLAST of Clc11G07715.1 vs. NCBI nr
Match: YP_009714126.1 (hypothetical chloroplast RF21 [Rhodoleia championii] >YP_009714145.1 hypothetical chloroplast RF21 [Rhodoleia championii] >QGJ04460.1 hypothetical chloroplast RF21 [Rhodoleia championii] >QGJ04479.1 hypothetical chloroplast RF21 [Rhodoleia championii])

HSP 1 Score: 119.0 bits (297), Expect = 4.0e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 34   ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Sbjct: 2077 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 2125

[Close]

BLAST of Clc11G07715.1 vs. NCBI nr
Match: YP_009471672.1 (hypothetical chloroplast RF21 [Parrotia subaequalis] >YP_009471691.1 hypothetical chloroplast RF21 [Parrotia subaequalis] >AVI15340.1 hypothetical chloroplast RF21 [Parrotia subaequalis] >AVI15359.1 hypothetical chloroplast RF21 [Parrotia subaequalis])

HSP 1 Score: 119.0 bits (297), Expect = 4.0e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 34   ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Sbjct: 2072 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 2120

[Close]

BLAST of Clc11G07715.1 vs. NCBI nr
Match: AEK71860.1 (hypothetical chloroplast RF2 [Curatella americana])

HSP 1 Score: 119.0 bits (297), Expect = 4.0e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 34   ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Sbjct: 2080 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 2128

[Close]

BLAST of Clc11G07715.1 vs. NCBI nr
Match: QKV44933.1 (hypothetical chloroplast RF2 [Heuchera longipetala var. longipetala] >QKV44934.1 hypothetical chloroplast RF2 [Heuchera longipetala var. longipetala])

HSP 1 Score: 119.0 bits (297), Expect = 4.0e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 34   ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Sbjct: 2070 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 2118

[Close]

BLAST of Clc11G07715.1 vs. NCBI nr
Match: QHB74991.1 (hypothetical chloroplast RF21 [Brunellia trianae] >QHB75011.1 hypothetical chloroplast RF21 [Brunellia trianae] >QHB75077.1 hypothetical chloroplast RF21 [Brunellia antioquensis] >QHB75096.1 hypothetical chloroplast RF21 [Brunellia antioquensis])

HSP 1 Score: 119.0 bits (297), Expect = 4.0e-23
Identity = 49/53 (92.45%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 35   LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGAHFDH 88
            LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG    H
Sbjct: 2084 LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIH 2136

[Close]

BLAST of Clc11G07715.1 vs. ExPASy Swiss-Prot
Match: Q68RU4 (Protein Ycf2 OS=Panax ginseng OX=4054 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-25
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 34   ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYW+RSFRG
Sbjct: 1874 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWSRSFRG 1922

[Close]

BLAST of Clc11G07715.1 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-25
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 35   LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Sbjct: 2079 LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 2126

[Close]

BLAST of Clc11G07715.1 vs. ExPASy Swiss-Prot
Match: P08973 (Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-25
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 34   ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            ALDPQQIEEDLFNHIVWAPRIW PWGFLFDCIERPNELGFPYWARSFRG
Sbjct: 1895 ALDPQQIEEDLFNHIVWAPRIWNPWGFLFDCIERPNELGFPYWARSFRG 1943

[Close]

BLAST of Clc11G07715.1 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-25
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 34   ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIER NELGFPYWARSFRG
Sbjct: 2080 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERTNELGFPYWARSFRG 2128

[Close]

BLAST of Clc11G07715.1 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-25
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 35   LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPN LGFPYWARSFRG
Sbjct: 2061 LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLGFPYWARSFRG 2108

[Close]

BLAST of Clc11G07715.1 vs. ExPASy TrEMBL
Match: A0A6B9M6L4 (Protein Ycf2 OS=Brunellia trianae OX=2695831 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-23
Identity = 49/53 (92.45%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 35   LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGAHFDH 88
            LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG    H
Sbjct: 2084 LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIH 2136

[Close]

BLAST of Clc11G07715.1 vs. ExPASy TrEMBL
Match: A0A6M8ATS5 (Protein Ycf2 OS=Mytilaria laosensis OX=54454 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 34   ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Sbjct: 2081 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 2129

[Close]

BLAST of Clc11G07715.1 vs. ExPASy TrEMBL
Match: A0A291EXF0 (Protein Ycf2 OS=Sinowilsonia henryi OX=51004 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 34   ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Sbjct: 2069 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 2117

[Close]

BLAST of Clc11G07715.1 vs. ExPASy TrEMBL
Match: A0A2S1P5D2 (Protein Ycf2 OS=Itea chinensis OX=1009483 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 34   ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Sbjct: 2085 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 2133

[Close]

BLAST of Clc11G07715.1 vs. ExPASy TrEMBL
Match: A0A6G9DWT2 (Protein Ycf2 OS=Liquidambar acalycina OX=63358 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 34   ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG
Sbjct: 2077 ALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 2125

[Close]

BLAST of Clc11G07715.1 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-22
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 35   LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            LDPQQIEEDLFNHIVWAPRIWRP GFLFDCIERPNELGFPY A SFRG
Sbjct: 2075 LDPQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYSAGSFRG 2122

[Close]

BLAST of Clc11G07715.1 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-22
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 35   LDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRG 83
            LDPQQIEEDLFNHIVWAPRIWRP GFLFDCIERPNELGFPY A SFRG
Sbjct: 2075 LDPQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYSAGSFRG 2122

The following BLAST results are available for this feature:

BLAST of Clc11G07715.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009714126.1	4.0e-23	100.00	hypothetical chloroplast RF21 [Rhodoleia championii] >YP_009714145.1 hypothetica...	[more]
YP_009471672.1	4.0e-23	100.00	hypothetical chloroplast RF21 [Parrotia subaequalis] >YP_009471691.1 hypothetica...	[more]
AEK71860.1	4.0e-23	100.00	hypothetical chloroplast RF2 [Curatella americana]	[more]
QKV44933.1	4.0e-23	100.00	hypothetical chloroplast RF2 [Heuchera longipetala var. longipetala] >QKV44934.1...	[more]
QHB74991.1	4.0e-23	92.45	hypothetical chloroplast RF21 [Brunellia trianae] >QHB75011.1 hypothetical chlor...	[more]

BLAST of Clc11G07715.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q68RU4	1.2e-25	97.96	Protein Ycf2 OS=Panax ginseng OX=4054 GN=ycf2-A PE=3 SV=1	[more]
B1A978	1.5e-25	100.00	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
P08973	2.0e-25	97.96	Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2	[more]
Q0ZIV6	4.5e-25	97.96	Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1	[more]
Q49KT6	5.8e-25	97.92	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]

BLAST of Clc11G07715.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6B9M6L4	2.0e-23	92.45	Protein Ycf2 OS=Brunellia trianae OX=2695831 GN=ycf2 PE=3 SV=1	[more]
A0A6M8ATS5	2.0e-23	100.00	Protein Ycf2 OS=Mytilaria laosensis OX=54454 GN=ycf2 PE=3 SV=1	[more]
A0A291EXF0	2.0e-23	100.00	Protein Ycf2 OS=Sinowilsonia henryi OX=51004 GN=ycf2 PE=3 SV=1	[more]
A0A2S1P5D2	2.0e-23	100.00	Protein Ycf2 OS=Itea chinensis OX=1009483 GN=ycf2 PE=3 SV=1	[more]
A0A6G9DWT2	2.0e-23	100.00	Protein Ycf2 OS=Liquidambar acalycina OX=63358 GN=ycf2 PE=3 SV=1	[more]

BLAST of Clc11G07715.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.3e-22	93.75	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.3e-22	93.75	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 34..82
None	No IPR available	PANTHER	PTHR33078:SF55	PROTEIN YCF2	coord: 34..82

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc11G07715	Clc11G07715	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G07715.1-exon	Clc11G07715.1-exon-ClcChr11:7736687..7736724	exon
Clc11G07715.1-exon	Clc11G07715.1-exon-ClcChr11:7736931..7737375	exon
Clc11G07715.1-exon	Clc11G07715.1-exon-ClcChr11:7737543..7737584	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G07715.1-cds	Clc11G07715.1-cds-ClcChr11:7736687..7736724	CDS
Clc11G07715.1-cds	Clc11G07715.1-cds-ClcChr11:7736931..7737375	CDS
Clc11G07715.1-cds	Clc11G07715.1-cds-ClcChr11:7737543..7737584	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc11G07715.1	Clc11G07715.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity