Clc11G07470.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc11G07470.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	general transcription factor 3C polypeptide 6-like
Location	ClcChr11: 7645813 .. 7648543 (-)
Sequence length	928
RNA-Seq Expression	Clc11G07470.1
Synteny	Clc11G07470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAAAAAGAATAAAAAATAAAAAGAAAAAGAATTAGAGTAAGGTAAGGCCGTCCTTCAAACCCCTTCAACCTTTCTCTCTCTACCCACTACGAACAAAAAAGACGTCGCCGCCTTCTTCCGTCCGACCGCTGCCCGCCTCTACTCATTCCTCCGTCTAACTTTCGACCGCCGTCTCCGACCGATCATCCGCCGGTAAGGCCCTCCATCCCCATTCTTTCTCTTTCTCTTTCTGTTTCTCAATCTCATCCTGTTTGCAGCACCACTTAGCAGCCCAGCCACCACGCAACTCCTCCGCCTCCGACCTTCCGTCGTCGCCACGCTACCGCCTGAGCTCTGACTAATTTCAAATTTTTATTTGATATTGCTTAGGTATCAAATCAAATCACAACTGATTTCAAATTCCTTAGGTTTTTTTTTCTCCTTTGCATTTAAACACACTGATTTGGAATTCTACCAAAATCAGCGGTTACAAACAGGGGTTAGCCAAAAGCTTTATTTGATATTGTTGAGCCGCTGACAAATTCAATTTATTTTTCAGAGATATCTCTAAGGAACATGGAGAAAGCTACAATTGATTCTACCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGTATGTTTCTGGCCTACTCTAAATCTTGATATTTAATTACTTGCTTTCAAGTTACCGTTGTTAAATTAAAAATGAGATGTTCATTAATTTCCACTTTGAGCAGTTAAGAATACGAACATTTGTGTATTTAAGAATTAGACTTTACCAGGTAGAAGAATAATCTCCATTACTTTCAATACATGTATTATACAGAAATTTCATTGTACAATAGTCCATATATGATATATTTAATGGCATATTTAGGGATACTTATTGATATTCTTTGGAACAAATTGAACGCCATATGTTATGAGAATTAGTGGGGAGCTAAGCCAAGAAAGGGGTTGTTTTATTGATTTTCTAGAAAATGAATGCAAAAGGGAAACTCCACCTTTATAAGGAGGTTAGATTTCAGGGGAATGAGACTGAATGGCATTAGGTTCCATGAAGTTAATATGAAATAACCTTAGGTAAAAGCTGATCCTAACAACTCATCAACCAATTATTTTTTTCACACACCTCAAATTTTGCAAGGGCCAATCTCCTTTTTCTTACGCTTACCATATACTTCTACATACCCCCAGGAGGTCTGCTGTTCCTTAAGTGCACCATGGCTAATTCTCCAACGTCAGAATCCTTGTTACATTGCTTCCTGTTTGCTAATGCATATTGTACATTAGCCTTAGTGAAACAGCCATACCAAACTAAGTTGAAGGAAGGGGCATTTACTTTTTAGCACAAGGACACAGTTGTACAACCTATAGAACAGATCTTGTTCAATAAGGTCGTAGGGAGGGGCATCTAATTGGTTTAAAAAACAATGAATGCAAGTTACAATACATAAGGGCAAGCTCCACCTTCATGAATTGGTTTGATTTGAGAAAAAGAGAGCAACTTACCTTAGTTATCATGACAACTACTCAAAATAAGGTTATACTTTAACCCCGTATGCCTATATAAAGAGAAGTAATTAATTAGTAAGGTAATAACTTTATCACAATTTTTTTCCAACCATGAGTACTCCCTCTACTAGGTTTCAGTGCTAGACTGATGCACAACTTATATTTTCCTGGAGTATCGTGTAAGGGTTTAATTGGTTTTTGATTTTTACATGCAGCGAGCTTTAAGAGAAAAAGAATTATGTATGTAGTTGGGCAAGCATTCTGTTAAACTGTACTGTTTATGTGAATTTTGATTAATTTGTTTTGCAGGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGGTAAGTTGTTAATAAGATACAAACTCTATACCTAGTGTACTGCAGCAGAACCATAATATGTCGTCTCTTAGCATTAATGCTCACAATTTAAATGACATTGATCTTACTCTCTTATCTTTTGGTTTGGGGCAACTGACAAGGCTGTTGTAGACTATCTTTTGTGATTAACAGGCAATTCTATATAACTTGCATATTAAAATATTTTTTTTAAATCTCTTTTGTAGATTGGAGAATATGAAGAAACTATAGGCACATGTCTTACCTTCGCGGAAGGTGAGCAAATTTAAATGAAAAGAAGTCATTTGATTCCTAAACTTTAAAGCAAGTTTTCAATTTGTTCTTTAAGACTTTGCATATACTGTTTGAATATTTCAATAGAAATTGGAAAACCATTGTCTTACACTGAAGTGTCATGTTCCCTAATGTAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAGTCGTCGCTCGAGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAAGAGTTGAAGCCCGTTGCTTCTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGCTGCTCCAAACTCAATATCTTAGTTCACTAAAGAGACTAATGTTATCTGTATATATAACTTTAGCATGCTTCTAAATAAACCTTTTGAAAAAAGTAAATTGATAGAACTTGTGGATCGAGTTATAAGTTGTCTATAGTTAGCTGCAATGGACAGACTGCCTAAGAATTTGGATGAGCTTCAAGAACTTGTAAAATTTTATACTTGAAATCTGAATCTAGGTCCCTATCGAAATTAGTGT

mRNA sequence

AAAAGAAAAAGAATAAAAAATAAAAAGAAAAAGAATTAGAGTAAGGTAAGGCCGTCCTTCAAACCCCTTCAACCTTTCTCTCTCTACCCACTACGAACAAAAAAGACGTCGCCGCCTTCTTCCGTCCGACCGCTGCCCGCCTCTACTCATTCCTCCGTCTAACTTTCGACCGCCGTCTCCGACCGATCATCCGCCGCACCACTTAGCAGCCCAGCCACCACGCAACTCCTCCGCCTCCGACCTTCCGTCGTCGCCACGCTACCGCCTGAGCTCTGACTAATTTCAAATTTTTATTTGATATTGCTTAGAGATATCTCTAAGGAACATGGAGAAAGCTACAATTGATTCTACCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGATTGGAGAATATGAAGAAACTATAGGCACATGTCTTACCTTCGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAGTCGTCGCTCGAGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAAGAGTTGAAGCCCGTTGCTTCTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGCTGCTCCAAACTCAATATCTTAGTTCACTAAAGAGACTAATGTTATCTGTATATATAACTTTAGCATGCTTCTAAATAAACCTTTTGAAAAAAGTAAATTGATAGAACTTGTGGATCGAGTTATAAGTTGTCTATAGTTAGCTGCAATGGACAGACTGCCTAAGAATTTGGATGAGCTTCAAGAACTTGTAAAATTTTATACTTGAAATCTGAATCTAGGTCCCTATCGAAATTAGTGT

Coding sequence (CDS)

ATGGAGAAAGCTACAATTGATTCTACCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGATTGGAGAATATGAAGAAACTATAGGCACATGTCTTACCTTCGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAGTCGTCGCTCGAGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAAGAGTTGAAGCCCGTTGCTTCTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGCTGCTCCAAACTCAATATCTTAG

Protein sequence

MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLLDSAAPNSIS

Homology

[Close]

BLAST of Clc11G07470.1 vs. NCBI nr
Match: XP_038885696.1 (uncharacterized protein LOC120075999 [Benincasa hispida])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKATIDS  D EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYE
Sbjct: 1   MEKATIDSACDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLLD 120
           ETIGTCLTFAEEEVPVVEEEA PSE++RRSREA EPKQAPRKELKPVASVHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAEPSESNRRSREAAEPKQAPRKELKPVASVHKILKFKLLD 120

Query: 121 SAAPNSIS 129
           SA PNSIS
Sbjct: 121 SAVPNSIS 128

[Close]

BLAST of Clc11G07470.1 vs. NCBI nr
Match: XP_023550663.1 (uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550664.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550665.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550666.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.5 bits (545), Expect = 5.2e-52
Identity = 114/134 (85.07%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKA IDS SDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYE
Sbjct: 1   MEKAAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLL- 120
           ETIGTCLTFAEEEV +VEEEA PSET+RRS +AVEP QAPRK+LKPVASVHKILKFKLL 
Sbjct: 61  ETIGTCLTFAEEEVSMVEEEAVPSETNRRSEKAVEPNQAPRKDLKPVASVHKILKFKLLD 120

Query: 121 -----DSAAPNSIS 129
                DSA P+S S
Sbjct: 121 SVDSVDSAVPDSTS 134

[Close]

BLAST of Clc11G07470.1 vs. NCBI nr
Match: XP_004138617.3 (general transcription factor 3C polypeptide 6 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-51
Identity = 114/128 (89.06%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKATIDS SD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLLD 120
           ETIGTCLTFAEEEVPVVEEEA PSET R SRE VEPKQA +KELK VA VHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKLLD 120

Query: 121 SAAPNSIS 129
           S  P+SIS
Sbjct: 121 SDVPSSIS 128

[Close]

BLAST of Clc11G07470.1 vs. NCBI nr
Match: XP_022993830.1 (uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993831.1 uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993832.1 uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993833.1 uncharacterized protein LOC111489725 [Cucurbita maxima])

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-51
Identity = 112/131 (85.50%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKA IDS SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYE
Sbjct: 1   MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLL- 120
           ETIGTCLTFAEEEV +VEEEA PS+T+RRS +AVEP QAPRK+LKPVASVHKILKFKLL 
Sbjct: 61  ETIGTCLTFAEEEVSMVEEEAVPSKTNRRSEKAVEPHQAPRKDLKPVASVHKILKFKLLD 120

Query: 121 --DSAAPNSIS 129
             DSA P+S S
Sbjct: 121 SVDSAVPDSTS 131

[Close]

BLAST of Clc11G07470.1 vs. NCBI nr
Match: XP_022939121.1 (uncharacterized protein LOC111445121, partial [Cucurbita moschata])

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-51
Identity = 112/134 (83.58%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKA IDS SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYE
Sbjct: 143 MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 202

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLL- 120
           ETIGTCLTFAEEEV +VEEEA PSET+RRS +AVEP QAPR++LKPVASVHKILKFKLL 
Sbjct: 203 ETIGTCLTFAEEEVSMVEEEAVPSETNRRSEKAVEPNQAPRRDLKPVASVHKILKFKLLD 262

Query: 121 -----DSAAPNSIS 129
                DSA P+S S
Sbjct: 263 SVDSVDSAVPDSTS 276

[Close]

BLAST of Clc11G07470.1 vs. ExPASy TrEMBL
Match: A0A6J1JTZ1 (uncharacterized protein LOC111489725 OS=Cucurbita maxima OX=3661 GN=LOC111489725 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 7.3e-52
Identity = 112/131 (85.50%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKA IDS SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYE
Sbjct: 1   MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLL- 120
           ETIGTCLTFAEEEV +VEEEA PS+T+RRS +AVEP QAPRK+LKPVASVHKILKFKLL 
Sbjct: 61  ETIGTCLTFAEEEVSMVEEEAVPSKTNRRSEKAVEPHQAPRKDLKPVASVHKILKFKLLD 120

Query: 121 --DSAAPNSIS 129
             DSA P+S S
Sbjct: 121 SVDSAVPDSTS 131

[Close]

BLAST of Clc11G07470.1 vs. ExPASy TrEMBL
Match: A0A6J1FF13 (uncharacterized protein LOC111445121 OS=Cucurbita moschata OX=3662 GN=LOC111445121 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.6e-52
Identity = 112/134 (83.58%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKA IDS SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYE
Sbjct: 143 MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 202

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLL- 120
           ETIGTCLTFAEEEV +VEEEA PSET+RRS +AVEP QAPR++LKPVASVHKILKFKLL 
Sbjct: 203 ETIGTCLTFAEEEVSMVEEEAVPSETNRRSEKAVEPNQAPRRDLKPVASVHKILKFKLLD 262

Query: 121 -----DSAAPNSIS 129
                DSA P+S S
Sbjct: 263 SVDSVDSAVPDSTS 276

[Close]

BLAST of Clc11G07470.1 vs. ExPASy TrEMBL
Match: A0A0A0LML8 (TFIIIC_sub6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G406680 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.1e-51
Identity = 113/128 (88.28%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKATIDS SD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLLD 120
           ETIGTCLTFAEEEVPVVEEEA PSET R SRE VEP+QA +KELK VA VHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPEQATKKELKLVACVHKILKFKLLD 120

Query: 121 SAAPNSIS 129
           S  P+SIS
Sbjct: 121 SDVPSSIS 128

[Close]

BLAST of Clc11G07470.1 vs. ExPASy TrEMBL
Match: A0A1S4DTV8 (general transcription factor 3C polypeptide 6-like OS=Cucumis melo OX=3656 GN=LOC103485483 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 8.1e-51
Identity = 111/128 (86.72%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKATIDS S+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYE
Sbjct: 1   MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLLD 120
           ETIGTCLTFAEEEVPVVEEEA PSET+  SREA EPKQA RKELK  A VHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKLLD 120

Query: 121 SAAPNSIS 129
           S  P+ IS
Sbjct: 121 SDVPSPIS 128

[Close]

BLAST of Clc11G07470.1 vs. ExPASy TrEMBL
Match: A0A6J1BZW5 (uncharacterized protein LOC111006225 OS=Momordica charantia OX=3673 GN=LOC111006225 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 112/131 (85.50%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEK TID  SDGEE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKM+GEYE
Sbjct: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60

Query: 61  ETIGTCLTFAEEEVPVV--EEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKL 120
           ETIGTCLTFAEEEV VV  EEEAGPSET  R+ EAV P +APRKELKP+ASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120

Query: 121 L-DSAAPNSIS 129
           L DSA PNS S
Sbjct: 121 LPDSAVPNSTS 131

[Close]

BLAST of Clc11G07470.1 vs. TAIR 10
Match: AT3G15420.1 (Transcription factor TFIIIC, tau55-related protein )

HSP 1 Score: 95.1 bits (235), Expect = 4.3e-20
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 13  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAE 72
           EEE+V++DL +VS  ++IP +APY LSGLDT+NPVLTI  KIK++GEY ETIGTCL F+E
Sbjct: 2   EEEFVMIDLDEVSRHIEIPSDAPYTLSGLDTLNPVLTIDGKIKLVGEYIETIGTCLAFSE 61

Query: 73  EEVPVVEEEAGPSETSRRSREAVEPKQAPRKE-LKPVASVHKILKFKL 119
                 +EE   SE            Q P K+ ++PVA +HKILKF+L
Sbjct: 62  ------KEEVSASE-----------NQMPHKKIIEPVAKLHKILKFRL 92

[Close]

BLAST of Clc11G07470.1 vs. TAIR 10
Match: AT1G80745.1 (Transcription factor TFIIIC, tau55-related protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-18
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 13  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAE 72
           E+E+V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K+K++GEY  TIGTCL F++
Sbjct: 2   EDEHVMIDLDDVSRHIDIPADAPYTLSGLDTLNPVLTIDGKMKLVGEYIATIGTCLAFSD 61

Query: 73  EEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKL 119
           +         G ++T +            +K ++PVA +HKILKF+L
Sbjct: 62  K---------GDNQTPQ------------KKTVEPVAKLHKILKFRL 87

The following BLAST results are available for this feature:

BLAST of Clc11G07470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885696.1	1.6e-56	92.97	uncharacterized protein LOC120075999 [Benincasa hispida]	[more]
XP_023550663.1	5.2e-52	85.07	uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_004138617.3	1.5e-51	89.06	general transcription factor 3C polypeptide 6 [Cucumis sativus]	[more]
XP_022993830.1	1.5e-51	85.50	uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993831.1 uncharac...	[more]
XP_022939121.1	2.0e-51	83.58	uncharacterized protein LOC111445121, partial [Cucurbita moschata]	[more]

BLAST of Clc11G07470.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G07470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTZ1	7.3e-52	85.50	uncharacterized protein LOC111489725 OS=Cucurbita maxima OX=3661 GN=LOC111489725...	[more]
A0A6J1FF13	9.6e-52	83.58	uncharacterized protein LOC111445121 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A0A0LML8	2.1e-51	88.28	TFIIIC_sub6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G406680...	[more]
A0A1S4DTV8	8.1e-51	86.72	general transcription factor 3C polypeptide 6-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1BZW5	1.1e-50	85.50	uncharacterized protein LOC111006225 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of Clc11G07470.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15420.1	4.3e-20	52.78	Transcription factor TFIIIC, tau55-related protein	[more]
AT1G80745.1	1.4e-18	47.66	Transcription factor TFIIIC, tau55-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.40.4370		coord: 2..119 e-value: 1.6E-11 score: 45.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..104
IPR019481	Transcription factor TFIIIC, triple barrel domain	PFAM	PF10419	TFIIIC_sub6	coord: 13..117 e-value: 6.5E-13 score: 48.4
IPR042771	TFIIIC subunit GTF3C6-like	PANTHER	PTHR21860	TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 6-RELATED	coord: 6..120

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc11G07470	Clc11G07470	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G07470.1-exon	Clc11G07470.1-exon-ClcChr11:7645813..7646201	exon
Clc11G07470.1-exon	Clc11G07470.1-exon-ClcChr11:7646357..7646405	exon
Clc11G07470.1-exon	Clc11G07470.1-exon-ClcChr11:7646630..7646680	exon
Clc11G07470.1-exon	Clc11G07470.1-exon-ClcChr11:7647871..7648001	exon
Clc11G07470.1-exon	Clc11G07470.1-exon-ClcChr11:7648171..7648282	exon
Clc11G07470.1-exon	Clc11G07470.1-exon-ClcChr11:7648348..7648543	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G07470.1-three_prime_utr	Clc11G07470.1-three_prime_utr-ClcChr11:7645813..7646028	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G07470.1-cds	Clc11G07470.1-cds-ClcChr11:7646029..7646201	CDS
Clc11G07470.1-cds	Clc11G07470.1-cds-ClcChr11:7646357..7646405	CDS
Clc11G07470.1-cds	Clc11G07470.1-cds-ClcChr11:7646630..7646680	CDS
Clc11G07470.1-cds	Clc11G07470.1-cds-ClcChr11:7647871..7647984	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G07470.1-five_prime_utr	Clc11G07470.1-five_prime_utr-ClcChr11:7647985..7648001	five_prime_UTR
Clc11G07470.1-five_prime_utr	Clc11G07470.1-five_prime_utr-ClcChr11:7648171..7648282	five_prime_UTR
Clc11G07470.1-five_prime_utr	Clc11G07470.1-five_prime_utr-ClcChr11:7648348..7648543	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc11G07470.1	Clc11G07470.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000127	transcription factor TFIIIC complex