Clc11G05240.2 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc11G05240.2
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr11: 5012619 .. 5012942 (+)
Sequence length	324
RNA-Seq Expression	Clc11G05240.2
Synteny	Clc11G05240.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGCCGTTGTTCGTTTTGGGGAGTGGCGGTGGTGGCGATGATGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCTAACGCCACCTACGGCGAGGTGACGGCGGAGTTGCTGATCCAGAGTGATATAACTCGGTATCTCATGTTTAATGAAGCCGAAGTCAAGACAGGTAATACCCCGAACCCAAACGTCAAAGCTTGTGACAACGGCGCCGGAAACCCGATGGGCGCCTGCGGTGGCAGCGCCAATAATAAAAAGCATTGCAACGCATACGACGGCGCCGCCGCTTGCAAATAA

mRNA sequence

ATGGGTGGCCGTTGTTCGTTTTGGGGAGTGGCGGTGGTGGCGATGATGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCTAACGCCACCTACGGCGAGGTGACGGCGGAGTTGCTGATCCAGAGTGATATAACTCGGTATCTCATGTTTAATGAAGCCGAAGTCAAGACAGGTAATACCCCGAACCCAAACGTCAAAGCTTGTGACAACGGCGCCGGAAACCCGATGGGCGCCTGCGGTGGCAGCGCCAATAATAAAAAGCATTGCAACGCATACGACGGCGCCGCCGCTTGCAAATAA

Coding sequence (CDS)

ATGGGTGGCCGTTGTTCGTTTTGGGGAGTGGCGGTGGTGGCGATGATGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCTAACGCCACCTACGGCGAGGTGACGGCGGAGTTGCTGATCCAGAGTGATATAACTCGGTATCTCATGTTTAATGAAGCCGAAGTCAAGACAGGTAATACCCCGAACCCAAACGTCAAAGCTTGTGACAACGGCGCCGGAAACCCGATGGGCGCCTGCGGTGGCAGCGCCAATAATAAAAAGCATTGCAACGCATACGACGGCGCCGCCGCTTGCAAATAA

Protein sequence

MGGRCSFWGVAVVAMMLTTILCSSHCCRGSVLTKANATYGEVTAELLIQSDITRYLMFNEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAACK

Homology

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BLAST of Clc11G05240.2 vs. NCBI nr
Match: KAG6578548.1 (hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-28
Identity = 67/106 (63.21%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 1   MGGRCSFWGVAVVAMMLTTILCSSHCCRGSVLTKANATYGEVTAELLIQSDITRYLMFNE 60
           MGGRCSFWGVAV A+M+T ILCSS+  R S L +ANATYGEV  ELL++ +I R+L F  
Sbjct: 1   MGGRCSFWGVAVAALMVTIILCSSNSSRASSLGRANATYGEVEVELLVRREIARFLNFKN 60

Query: 61  AEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
            +V T  T NP VK+C NG GNPMG C GS  NKKHCN+Y GA+AC
Sbjct: 61  MKVYTDKTQNPFVKSCGNGPGNPMGDCSGSPTNKKHCNSYAGASAC 106

[Close]

BLAST of Clc11G05240.2 vs. NCBI nr
Match: KAA0039430.1 (hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK00619.1 hypothetical protein E5676_scaffold169G002390 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-24
Identity = 69/108 (63.89%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLMF 60
           MG R SF G+  VV MML TI CSSH CRGSVL KANATY  V T ELLI  DI RYLMF
Sbjct: 1   MGSRSSFSGLTMVVVMMLITIFCSSHSCRGSVLIKANATYDVVMTEELLIYPDINRYLMF 60

Query: 61  NEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
           N  + KTG T + NV AC NGAGN    C GS +NKK CNAY G  AC
Sbjct: 61  NGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108

[Close]

BLAST of Clc11G05240.2 vs. NCBI nr
Match: KGN52519.1 (hypothetical protein Csa_008872 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 6.1e-22
Identity = 63/109 (57.80%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLM 60
           MGGR SF G  + VV +M  TIL SS+ CRGS+L KANAT G V T EL+I+ DITRYL+
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60

Query: 61  FNEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
           F  A   TG T +PN+  C NGAGN    CGG+ANN + CNAY G  AC
Sbjct: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

[Close]

BLAST of Clc11G05240.2 vs. NCBI nr
Match: KGN52518.1 (hypothetical protein Csa_007870 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-21
Identity = 60/98 (61.22%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 10  VAVVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLMFNEAEVKTGNT 69
           + VV MML TIL SSH CR SVL KANATYG V TAELLI  D+TRYLM++ A+ KTG T
Sbjct: 16  MVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVTRYLMYDHADSKTGKT 75

Query: 70  PNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
            +  V  CDNG GN    CGGS++NKK CNAY     C
Sbjct: 76  KDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

[Close]

BLAST of Clc11G05240.2 vs. NCBI nr
Match: KAA0039429.1 (hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK00618.1 hypothetical protein E5676_scaffold169G002380 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLM 60
           MGGR SF G  + VV +M  TIL SS+ CRGSVL KANATYG V T E++I  DITR+LM
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSVLMKANATYGGVSTTEMIIYHDITRFLM 60

Query: 61  FNEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
              ++  TGNT  PN+  C+NG GN  G CGG+ANN++ CN YD    C
Sbjct: 61  PPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

[Close]

BLAST of Clc11G05240.2 vs. ExPASy TrEMBL
Match: A0A5D3BR80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002390 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 69/108 (63.89%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLMF 60
           MG R SF G+  VV MML TI CSSH CRGSVL KANATY  V T ELLI  DI RYLMF
Sbjct: 1   MGSRSSFSGLTMVVVMMLITIFCSSHSCRGSVLIKANATYDVVMTEELLIYPDINRYLMF 60

Query: 61  NEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
           N  + KTG T + NV AC NGAGN    C GS +NKK CNAY G  AC
Sbjct: 61  NGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108

[Close]

BLAST of Clc11G05240.2 vs. ExPASy TrEMBL
Match: A0A0A0KUG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.0e-22
Identity = 63/109 (57.80%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLM 60
           MGGR SF G  + VV +M  TIL SS+ CRGS+L KANAT G V T EL+I+ DITRYL+
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60

Query: 61  FNEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
           F  A   TG T +PN+  C NGAGN    CGG+ANN + CNAY G  AC
Sbjct: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

[Close]

BLAST of Clc11G05240.2 vs. ExPASy TrEMBL
Match: A0A0A0KSJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21
Identity = 60/98 (61.22%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 10  VAVVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLMFNEAEVKTGNT 69
           + VV MML TIL SSH CR SVL KANATYG V TAELLI  D+TRYLM++ A+ KTG T
Sbjct: 16  MVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVTRYLMYDHADSKTGKT 75

Query: 70  PNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
            +  V  CDNG GN    CGGS++NKK CNAY     C
Sbjct: 76  KDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

[Close]

BLAST of Clc11G05240.2 vs. ExPASy TrEMBL
Match: A0A5D3BNE4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002380 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.5e-21
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   MGGRCSFWG--VAVVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLM 60
           MGGR SF G  + VV +M  TIL SS+ CRGSVL KANATYG V T E++I  DITR+LM
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSVLMKANATYGGVSTTEMIIYHDITRFLM 60

Query: 61  FNEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
              ++  TGNT  PN+  C+NG GN  G CGG+ANN++ CN YD    C
Sbjct: 61  PPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

[Close]

BLAST of Clc11G05240.2 vs. ExPASy TrEMBL
Match: A0A0A0KVT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 62/108 (57.41%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 1   MGGRCSFWGVA-VVAMMLTTILCSSHCCRGSVLTKANATYGEV-TAELLIQSDITRYLMF 60
           MG R SF G+  VV +ML TIL SSH CRGSVL KANATY  V T EL+I  DI R+LM 
Sbjct: 1   MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP 60

Query: 61  NEAEVKTGNTPNPNVKACDNGAGNPMGACGGSANNKKHCNAYDGAAAC 107
           + ++ KTG T   NV AC NGAGN    CGGS +N+  C+AY G  AC
Sbjct: 61  SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 108

The following BLAST results are available for this feature:

BLAST of Clc11G05240.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578548.1	1.5e-28	63.21	hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0039430.1	2.2e-24	63.89	hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK0061...	[more]
KGN52519.1	6.1e-22	57.80	hypothetical protein Csa_008872 [Cucumis sativus]	[more]
KGN52518.1	4.0e-21	61.22	hypothetical protein Csa_007870 [Cucumis sativus]	[more]
KAA0039429.1	2.0e-20	55.96	hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK0061...	[more]

BLAST of Clc11G05240.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G05240.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BR80	1.1e-24	63.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KUG7	3.0e-22	57.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1	[more]
A0A0A0KSJ4	1.9e-21	61.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1	[more]
A0A5D3BNE4	9.5e-21	55.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KVT8	1.8e-19	57.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1	[more]

BLAST of Clc11G05240.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc11G05240	Clc11G05240	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G05240.2-exon	Clc11G05240.2-exon-ClcChr11:5012619..5012942	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc11G05240.2-cds	Clc11G05240.2-cds-ClcChr11:5012619..5012942	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc11G05240.2	Clc11G05240.2-protein	polypeptide