Clc10G12090.1 (mRNA) Watermelon (cordophanus) v2

Overview
NameClc10G12090.1
TypemRNA
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr10: 25509563 .. 25514812 (+)
Sequence length468
RNA-Seq ExpressionClc10G12090.1
SyntenyClc10G12090.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTATATGCATGCCTCCTTATTTCCCTCTTATTAATCCTTCAAACTGTATGGATTTCATCCCTTTCCAATGCTTCTAATTCTTTTCAATATGAATCTCTTTCCAATTCCAACCACTCATTCAACTCTCTCCCTCCTCTTCAACCCCATCATCATCATCATCATCAACTACTTTTGGGTGAGATTTTCAAACCTTCTTTCTTTTTCTTTTCTGAAAGTACACAATTTCATATGTTTAATTAAAATTTTAGTAATTGTTGTCTCTCTTTAGAAATAGAGAGTGAATTAGAAGAAAGGAGACATCTTAAGTTGCTCTTTAACCCAAAATTTTATATCCAACTTTTTTTTTTTCTTTTCTTCCCTCCATATTGATTAGTTTTTATTTGCATTTTTTTTTAATAAAGGGTGGAACTATATTCACATAATGATGAGTATTATTATTGTTGTTATTTGACTAATTTTCATAAAATTTAATTAGTAGAAGTAAACTTAAGATAAATATAAGGATTAATATTGGACAATATCTTTGTAAATATTTTTAACAATTTTGTCATTTAAAATAATTTCTCAAAATTATATATAATTCAAATTACAGAAGTTAAAATAGGTTTTTTTTTACCTCAATTAACTAAAAATGATGTTTTTGAAAGACATTTTTTTCTCTGGTAAATCGAAAGATGACCTTAGTTTCTTCTAATTCTTTTTATTTGGTTTCCAGTGAACGGCGGAGAAGAGAATAAGACGGCGGAGAGTTGGGTTGTTTTAAAAGCTAAAGGAGGAAGGTCCGGCAGCGCGGGGGCAGGTTCCAACAACCACCGGCCGGGAAAGGCAAATCAGAAGAACGCAGCTTCCAATTTGATGAAGTCTAATAATATAATAATAATTACTACTCTGCTGCTCTCTTCCTATTTATACTTCTTCTAGTCTTCTTTTCGATTGATTTCCATATGGAATAATATGAAAGGATTATATATATGTAAGCAAAATTTTGTTATCAACCACTTATACACACGGATCTTACAATCATGAGATTTGGTTTTATCAATTAATTGGATTTCAATGTCGTGACATTTTTATCTCGGAAAAATTTTCATTGGTCGCATCAAAATACTTATGGAGTCCACTGACATTGAAAGATGTATTAATAAAGACAATTTTCTATTGTGAACAAAAGAAGTATAGTATGTCATATTGATCATGGTACGTAACTAAGGTAATTAATACCTTGTTCAATTTAAGTTATTCCATACTTGTTGCTTGAAAATTATTAGTTTGAGTTTTTGTATTATAATCTTTGTTGTTTAGGGTTTATTGTTGATCATTTTGAAGCAATTCAACCGTTTTCTAAGTTATCTATGTTTTTATAATTAATTATTGTGATTGTATTTTCATTGCATAATTAGTATGTGAATAGTGACTTCTTAGAATGTTTATAAAGTCTGAGTTGATGCATAGGTTCATTCAATAGTGACCAATGGTTTGCATTTAAAATGTGGCAAAAGGATACTAGAACTTCCATTATACGATATTACCACTTTAGACATAAGTCCTAACATACTTTATTTGGTCTCAGTCTTTTCTCGAATGAGTGTCCTCTATTTTTAAAGAAGATGGCGAATTCTAGGTGACACTTTTGTTTTGTTGTATACTTTGTTGAGCTTCTAAAAAAAAGAAAGTTGATAATAAATTTATTTTTATTTCCAACTCTCTTTTTAACATCTTTTTCTCGAGATGTTGAAAAAGATCGGAGGAATGAGAAAGAAAAATACGGGAGAGATGTGAGTTGCTTTGAATGTTTCCAAGAAAGAGAATCATTTCTTCCGCAAAGAAAAAGGATTTTCTTTCATAAAGAAGCAAAAAGGGTTTTAGGATGAGACACAAACATGATAGATAATTATATATATGCAAGCCTCTTTTTATATATATACTTTTAGAGATAATAATTAAGTGCATAACAACATTTTTTTAAAATGGTAAATGTAGCAAAATCTATTGATGATATACTGAGAGACCACGTTATTAATATGTTCTATCACTAATAGAATTTGAAACTAAAATCTAAATTTTGCTATATTTCTAATTTTTTTATATTGTGCTATATTTACAAATACTTTGAATCTAATTGTTATATTTTCAAATGCCCCTTATACTAAATGATAAGCCAAGTTCAAATGAGAAAGTGGTCCAAGTTTGTTCATCTTAGTATCAAATTTTGTCTCTTCTTTAAATATATGACCTACATGTGTGTCTTATGTTTGAAGATTTGAAAAACTTAATTGGGAGAGTCAAATGAATGACTCAAAATTTGGACCCTAAAGTAACCCTCTTTCTAAAACTTTTTGTTTGTTTTTTTTTTTTAACTATTTTGCTTACATCTTATCAAGTACTTGAAATTACTAAAATGGACCATTTTTTTTGTTGGAAATTTCTTATGGGCCCCACGTCCATTAATAAATGAGTTTTATTGTTATTTTTGCTATCTTAATTAATTAACAAGGAGTTAGATTATTACACGTCTTTGAAAGGAATATTAATTATAGACAAAACGTATAGAAATTAATAACAATATTAATTCTAATTTAATGAGGGGATGAATTAGAATTAAATTTATTGTGTTTTGATCGAATTAACGTCAGATAGATATTAGGTCGTTTTCTCTCATCCCCATTAGAGAGTTTTCCTTTATCTACAATTATCTACGTTCCCAATGTGCTTATGATGTAGCACCAGGTAGACTGTTAGCTAGTGTGTATCATTCCTAAAAAAGGAGGAGAAATTAAGGAGAATTATGTATAAGAAGAAAACACGATCTATCTAGACTTGGAAGATTATCATTTACCTAGTATTTCAGCTTTGCAATGGATTTAGGTACGATTCCGCTTTTAAACTTTAATTCTCTTGAATTTGACCTAAGAAATAGATTTGTGATTTTAAGTTTACAAATTATAGTTCCTTAATATTTCCATCATATTTTGCATATGCATTAAGATATCTCACTCTATCGCTCATTTTTGTATTTAGATTTTTCAGCTTATCGCTCTCTCTATTTTTTCTCGCTCTTGCTCCTCTCACTTCTCTCATTCCTTTGGGTTTAGAATTTTTTTTTATCCTCACTCTCATTCCTTTTGTGTATAGAATTGTATGTTCCTCACTCTCTCTATTTCAATCTTTCACTCTTGCTAATTCTCTCATTCCTTTGGTTTAAATTTTTTCTCTTCATTCTAGCTATACTCTTTGCTCCATAGTAGCGAGAGTCCAACAAGAGTGCACAAAAAATCGTTTTAGTAATTTTAATAGATTACATAAACAAAATGTTAGAAAACATAAAATTTAAAAAGTGGGGCATATTTCATTTTGGACCCAAAATTTAACTACTATGCAATCATCTCTTAAATATTCTTATTGCATGTAAGATTAAGCACACAATTATTTCTCCTCCTGTCGTTCTAAATCGTAAAACTTAATTTGAATGGAGCAAAAATGTGCTCCACCAAAATATTTTATAATATATACTAAGAAACTATATCATGAAACCTTGATTATAAGAATCTTTCATGGTGCTATTATGATTTTGTTGTCAAATGATGTTCCAAAGTTTGATTGGTGTAAGATGAATAACTTGAATTTGTATTAATTTGGTATAAGTGTAGTATAACCATTAACCTCTATTGTTTATCTTCTCAATCCTTTTTTCTTAAATGTGAACATATTTTGAAGGCTTTTTAGTTCGTTGTCAAATATAAAATTGTCTTAAGAACTTCTTTAATTTTGCTTCAATTATGAATTTGTCTCAAATCAACTTAAACTTTTTGGTGAGTCGTTAATTGATGTCTTGAAAACTCAACTCTTCAAACATATATATATATATTTTGCATCTCTAAAGAAGTCTTTTATTTTATTCTTCGAGTCTTTGACTCAAAGAATTTTAAAGAGTTTTCAGTCTCTGGGAAATTTTTATTTAATTTTTTAGGTTCTAAATCTTCTCTTTGAATTCTTCTTTTAAAAGTTTGACCCGTTGAACCCTCAAAATAAAAGATATTTTCAATTTATAGAGTTTTCTTGAGTCTTATTGTGTAGGCTTGAGCTTTGTCAAGTTTGGATCCAACCCGCTAGGCTTGAGATTTGTTGGCTTGAGCCCAACCCTTTAGACTTGGACTTTGTTGGCTTTAATCTAACTTTATCGGCTTGAACTTCAAGCCAAATTGTCATTCATTTTGAGCCTTGTAGACTTGCTCAATCTTAGACTTAGTAGCCATATTACCCAATTCGATCAGGCTAGGTTTACTTGATCAAATGACCATAAGAAGACACATGATATTATTTGGAATTTTTCCACTTCTTGTCTTCAAATTTAATTGTAGACACACATCTCAATTTATAATTTGTCTTATATTTAGCATATAATTTGTCAGTAATTTAAGAATAATGATAAGATAATTTATGATTTGCCAAAAAAAATTTTGATGCATTTTTGCATATTGTCATATATTTACATAGAATAATTAAAAATATAGGAATTCTAACTCATTAGTCATTTTTTAGTTTTGATTATAGGTTTTAAGATATATATACTTTTAACTTTGAGTTTTGAATTGAGTTTTTATTCATTATTAGTCAAAGATCTAAAATGTCAAATCTCAAATTGCAAAGGTTAAGCACTTCCTGTAGTGGATTTTCTATGATTTCATTTCATCCAGTCAAAATACTTTTCTCCGTCATATTGATATTGATCCTATGTGCCCTTTGGGTGGGGTGGCTTTGGAAACAATTGAGCATGCCTCTTTGAGTGTGTAAGAGCTAAGAGAAGTTCGAAATGTTTGCTCCCAATTTGGGGAAATTTGTCATTCAATCAGTTTTTGAATAAGGGAAGGGTTAATTAATCAGTTTATGATTTTGGTAGATTGAGAGTTTAAGTTGGCTTGTCTCGATGTCTGGGCAATCTAGGGCGACCAAAATAAACTGGTTCATAAGGAAGTTGTCCATTCGGTGGTTTTTCGATTTCAATGAGTGGGAGACTAATTGGTTTCTTTTTTGGGTAACACAGAGATTGGGCTTGATATTGATAGGAAAGAGGAGTTGCTTAGCCCTTTTAATGGTCCGAATTTCTGGATTATGTATGTCGATGCAGTTTGCCAGGTTAGGGAGGAAATAACAGGTTTTGGAGCAATCTTGTTAGATGAGAAGGCAACGATGAAAGGAGCGGAGTACTGTGAAGGCAACGATGAAAGGAGCGGAGTACTGTTTTAG

mRNA sequence

ATGGGAGTATATGCATGCCTCCTTATTTCCCTCTTATTAATCCTTCAAACTGTATGGATTTCATCCCTTTCCAATGCTTCTAATTCTTTTCAATATGAATCTCTTTCCAATTCCAACCACTCATTCAACTCTCTCCCTCCTCTTCAACCCCATCATCATCATCATCATCAACTACTTTTGGTGAACGGCGGAGAAGAGAATAAGACGGCGGAGAGTTGGGTTGTTTTAAAAGCTAAAGGAGGAAGGTCCGGCAGCGCGGGGGCAGAGATTGGGCTTGATATTGATAGGAAAGAGGAGTTGCTTAGCCCTTTTAATGGTCCGAATTTCTGGATTATGTATGTCGATGCAGTTTGCCAGGTTAGGGAGGAAATAACAGGTTTTGGAGCAATCTTGTTAGATGAGAAGGCAACGATGAAAGGAGCGGAGTACTGTGAAGGCAACGATGAAAGGAGCGGAGTACTGTTTTAG

Coding sequence (CDS)

ATGGGAGTATATGCATGCCTCCTTATTTCCCTCTTATTAATCCTTCAAACTGTATGGATTTCATCCCTTTCCAATGCTTCTAATTCTTTTCAATATGAATCTCTTTCCAATTCCAACCACTCATTCAACTCTCTCCCTCCTCTTCAACCCCATCATCATCATCATCATCAACTACTTTTGGTGAACGGCGGAGAAGAGAATAAGACGGCGGAGAGTTGGGTTGTTTTAAAAGCTAAAGGAGGAAGGTCCGGCAGCGCGGGGGCAGAGATTGGGCTTGATATTGATAGGAAAGAGGAGTTGCTTAGCCCTTTTAATGGTCCGAATTTCTGGATTATGTATGTCGATGCAGTTTGCCAGGTTAGGGAGGAAATAACAGGTTTTGGAGCAATCTTGTTAGATGAGAAGGCAACGATGAAAGGAGCGGAGTACTGTGAAGGCAACGATGAAAGGAGCGGAGTACTGTTTTAG

Protein sequence

MGVYACLLISLLLILQTVWISSLSNASNSFQYESLSNSNHSFNSLPPLQPHHHHHHQLLLVNGGEENKTAESWVVLKAKGGRSGSAGAEIGLDIDRKEELLSPFNGPNFWIMYVDAVCQVREEITGFGAILLDEKATMKGAEYCEGNDERSGVLF
Homology
[Close]
BLAST of Clc10G12090.1 vs. NCBI nr
Match: KGN58897.2 (hypothetical protein Csa_001334 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-15
Identity = 63/92 (68.48%), Postives = 64/92 (69.57%), Query Frame = 0 

Query: 1  MGVYACLLISLLLILQTVWISSLSNAS-NSFQYESLSNSNHSFNSLPPLQPHHHHHHQLL 60
          MGVYACLLISLLLILQTVWISSLSNAS NSF YESLSN        PPLQ HH H    L
Sbjct: 1  MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSN--------PPLQTHHLHQQPRL 60

Query: 61 LVNGGEENK--TAESWVVLKAK-GGRSGSAGA 89
             G EEN    AESW V KAK GGRSG+ GA
Sbjct: 61 GGGGKEENNKTAAESWTVSKAKGGGRSGAGGA 84

[Close]
BLAST of Clc10G12090.1 vs. NCBI nr
Match: KAG6581619.1 (hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-12
Identity = 60/90 (66.67%), Postives = 62/90 (68.89%), Query Frame = 0 

Query: 1  MGVYACLLISLLLILQTVWISSLSNASNSFQYESLSNSNHSFNSLPPLQPHHHHHHQLLL 60
          MGVYACLLISLLLI QT  ISSLSN        SL  SNHSFNS  PLQ    HHHQLL+
Sbjct: 1  MGVYACLLISLLLIFQTHSISSLSNG-------SLPISNHSFNS-QPLQ----HHHQLLV 60

Query: 61 V--NGGEENKTAESWVVLKAKGGRSGSAGA 89
             + GEEN T    VVLKAKGGRSGSAGA
Sbjct: 61 SGRDDGEENTTTVKLVVLKAKGGRSGSAGA 78

[Close]
BLAST of Clc10G12090.1 vs. ExPASy TrEMBL
Match: A0A0A0LCI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16
Identity = 65/94 (69.15%), Postives = 67/94 (71.28%), Query Frame = 0 

Query: 1  MGVYACLLISLLLILQTVWISSLSNAS-NSFQYESLSNSNHSFNSLPPLQPHHHHHHQLL 60
          MGVYACLLISLLLILQTVWISSLSNAS NSF YESLSN        PPLQ HH H    L
Sbjct: 1  MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSN--------PPLQTHHLHQQPRL 60

Query: 61 LVNGG---EENKT-AESWVVLKAK-GGRSGSAGA 89
          +  GG   E NKT AESW V KAK GGRSG+ GA
Sbjct: 61 VKGGGGKEENNKTAAESWTVSKAKGGGRSGAGGA 86

The following BLAST results are available for this feature:
BLAST of Clc10G12090.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58897.22.1e-1568.48hypothetical protein Csa_001334 [Cucumis sativus][more]
KAG6581619.13.7e-1266.67hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc10G12090.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc10G12090.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCI52.1e-1669.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1[more]
BLAST of Clc10G12090.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Clc10G12090Clc10G12090gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc10G12090.1-exonClc10G12090.1-exon-ClcChr10:25509563..25509743exon
Clc10G12090.1-exonClc10G12090.1-exon-ClcChr10:25510284..25510367exon
Clc10G12090.1-exonClc10G12090.1-exon-ClcChr10:25514610..25514812exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc10G12090.1-cdsClc10G12090.1-cds-ClcChr10:25509563..25509743CDS
Clc10G12090.1-cdsClc10G12090.1-cds-ClcChr10:25510284..25510367CDS
Clc10G12090.1-cdsClc10G12090.1-cds-ClcChr10:25514610..25514812CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Clc10G12090.1Clc10G12090.1-proteinpolypeptide