Clc09G12650.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc09G12650.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	TPR_REGION domain-containing protein
Location	ClcChr09: 11637380 .. 11638942 (+)
Sequence length	1367
RNA-Seq Expression	Clc09G12650.1
Synteny	Clc09G12650.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATTGTCATTTTACAAAGAAAAATACGAAGAAGACGAAGAAGAACCGACTCCCCCGGAGTAGCCTGTTCGTTAGCACTTCACGTGCAAACATACACGTGTCCGCATCTCCAACGTTCTAAACCTGAACTCCATCACCAAATCCAACGGTGAGCACTCCCCTATATATATGCATTTACGACACATTCAAACCTCAACGAAATAATCAAAAGACAAAAGAACTCTGCCATTTCATAACCTTCGCGACTTTGCAGCAATGAAATCCGCTCTCCTCCGAACCGGCTCCGTTCCCGTCCTCTCGCCGGCTGCCGCCGCTTCTTCTTCCTTCTCCAACAACAAACCGTTGTATGGAGTTTTCTCCTGCCACAAAAGTTCCGCTTCATCTCCGAAAATCTATCTACATTTCGAAATCAATCATCGCAGAGGGAAGAATTCCGGTAGTATCCGAGGAGCAGCATCGGAGAGCGACATCACACGATCGATGCACGAGGTTTCCAATTCGTACGATCAATCCAGTGGAGTCAGATCATCTCGATCTCGTTCTCGGTCCTTTCCTTCCGGAATTCCGGAAGAGGAATTTCTGAACGAGGATGAATTCGACAGTGATTCCATGGAGAAAGGCGCTAATTTTGTTGCAGATACGTTTTCGAACGGAAGTAATAACCATAGTAAGATCGGAGCATACTACGAACAGTTGCTGCAATTGAACCCTAGCGACCCTCTGTTACTGAGAAACTACGGAAAATTCCTCCACGAGGTAATCGAAAGCTAGAATTGTAAAATTGAAAGTCTGTTTGGATCTGAAATCGTGAAATGTAATGAAACCTTACGGTTTAATTTGTTGAAAATTGATGTATGATGTAAAGGTGGAGAAAGATACAATACGAGCAGAGGAATGCTACAGCAGAGCAATATTAGCGAGTCCAACAGACGGTGAATTGCTAGCTTTGTATGGAAAATTAGTATGGGATACTCAAAGAGATAAGCGAAGAGCTCAATATTACTTTGATCGAGCTGTGTATGCCTCTCCTAACGACTGGTAATTTCGGATCTCTGAATCTAGAAATTTAAAGCCCTAATTTGATGAACTGGAAGGCTTCTGAATGTTTGAATTTTGTTTGTGAAGTTTGGTGATAGGACATTACGCTCATTTCTTGTGGCAAGTTGAAGACGATGAGGCGGCGGAGGCTCCACCGGCGGCAATGGTAGCGGCGTATTGATGCGGATGAAATTGGTTTTGGGAAATTAGGAGAGGCAGAACTAACAAAGAAGTGGGCATGTGCTTTGTGCATGGGCCATTTCAAGAGGGGAATAAGTTCAGGAAACGGGGGCTGCTGTCAGTTTTCTGTATTTATTATATTTAAAGCTCTTTTACATTTTTTTTTTCTCGTTTGTAAAAGTGTAAAATTATAATTTTTTGGGGAAGTTTAATCGATGTTTACTTAACATTCAATGCCTAGACTAATACAGTCCGAATAATATGTTATATTTGAAAACAATTATAAAAGAATATCAAATCTAATTTTATTGTAAAAAAATATAATATATATAGAAGAATTTCAC

mRNA sequence

TTGATTGTCATTTTACAAAGAAAAATACGAAGAAGACGAAGAAGAACCGACTCCCCCGGAGTAGCCTGTTCGTTAGCACTTCACGTGCAAACATACACGTGTCCGCATCTCCAACGTTCTAAACCTGAACTCCATCACCAAATCCAACGGTGAGCACTCCCCTATATATATGCATTTACGACACATTCAAACCTCAACGAAATAATCAAAAGACAAAAGAACTCTGCCATTTCATAACCTTCGCGACTTTGCAGCAATGAAATCCGCTCTCCTCCGAACCGGCTCCGTTCCCGTCCTCTCGCCGGCTGCCGCCGCTTCTTCTTCCTTCTCCAACAACAAACCGTTGTATGGAGTTTTCTCCTGCCACAAAAGTTCCGCTTCATCTCCGAAAATCTATCTACATTTCGAAATCAATCATCGCAGAGGGAAGAATTCCGGTAGTATCCGAGGAGCAGCATCGGAGAGCGACATCACACGATCGATGCACGAGGTTTCCAATTCGTACGATCAATCCAGTGGAGTCAGATCATCTCGATCTCGTTCTCGGTCCTTTCCTTCCGGAATTCCGGAAGAGGAATTTCTGAACGAGGATGAATTCGACAGTGATTCCATGGAGAAAGGCGCTAATTTTGTTGCAGATACGTTTTCGAACGGAAGTAATAACCATAGTAAGATCGGAGCATACTACGAACAGTTGCTGCAATTGAACCCTAGCGACCCTCTGTTACTGAGAAACTACGGAAAATTCCTCCACGAGGTGGAGAAAGATACAATACGAGCAGAGGAATGCTACAGCAGAGCAATATTAGCGAGTCCAACAGACGGTGAATTGCTAGCTTTGTATGGAAAATTAGTATGGGATACTCAAAGAGATAAGCGAAGAGCTCAATATTACTTTGATCGAGCTGTGTATGCCTCTCCTAACGACTGTTTGGTGATAGGACATTACGCTCATTTCTTGTGGCAAGTTGAAGACGATGAGGCGGCGGAGGCTCCACCGGCGGCAATGGTAGCGGCGTATTGATGCGGATGAAATTGGTTTTGGGAAATTAGGAGAGGCAGAACTAACAAAGAAGTGGGCATGTGCTTTGTGCATGGGCCATTTCAAGAGGGGAATAAGTTCAGGAAACGGGGGCTGCTGTCAGTTTTCTGTATTTATTATATTTAAAGCTCTTTTACATTTTTTTTTTCTCGTTTGTAAAAGTGTAAAATTATAATTTTTTGGGGAAGTTTAATCGATGTTTACTTAACATTCAATGCCTAGACTAATACAGTCCGAATAATATGTTATATTTGAAAACAATTATAAAAGAATATCAAATCTAATTTTATTGTAAAAAAATATAATATATATAGAAGAATTTCAC

Coding sequence (CDS)

ATGAAATCCGCTCTCCTCCGAACCGGCTCCGTTCCCGTCCTCTCGCCGGCTGCCGCCGCTTCTTCTTCCTTCTCCAACAACAAACCGTTGTATGGAGTTTTCTCCTGCCACAAAAGTTCCGCTTCATCTCCGAAAATCTATCTACATTTCGAAATCAATCATCGCAGAGGGAAGAATTCCGGTAGTATCCGAGGAGCAGCATCGGAGAGCGACATCACACGATCGATGCACGAGGTTTCCAATTCGTACGATCAATCCAGTGGAGTCAGATCATCTCGATCTCGTTCTCGGTCCTTTCCTTCCGGAATTCCGGAAGAGGAATTTCTGAACGAGGATGAATTCGACAGTGATTCCATGGAGAAAGGCGCTAATTTTGTTGCAGATACGTTTTCGAACGGAAGTAATAACCATAGTAAGATCGGAGCATACTACGAACAGTTGCTGCAATTGAACCCTAGCGACCCTCTGTTACTGAGAAACTACGGAAAATTCCTCCACGAGGTGGAGAAAGATACAATACGAGCAGAGGAATGCTACAGCAGAGCAATATTAGCGAGTCCAACAGACGGTGAATTGCTAGCTTTGTATGGAAAATTAGTATGGGATACTCAAAGAGATAAGCGAAGAGCTCAATATTACTTTGATCGAGCTGTGTATGCCTCTCCTAACGACTGTTTGGTGATAGGACATTACGCTCATTTCTTGTGGCAAGTTGAAGACGATGAGGCGGCGGAGGCTCCACCGGCGGCAATGGTAGCGGCGTATTGA

Protein sequence

MKSALLRTGSVPVLSPAAAASSSFSNNKPLYGVFSCHKSSASSPKIYLHFEINHRRGKNSGSIRGAASESDITRSMHEVSNSYDQSSGVRSSRSRSRSFPSGIPEEEFLNEDEFDSDSMEKGANFVADTFSNGSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHEVEKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDEAAEAPPAAMVAAY

Homology

[Close]

BLAST of Clc09G12650.1 vs. NCBI nr
Match: XP_038888361.1 (uncharacterized protein LOC120078207 [Benincasa hispida])

HSP 1 Score: 426.0 bits (1094), Expect = 2.3e-115
Identity = 225/263 (85.55%), Postives = 238/263 (90.49%), Query Frame = 0


Query: 1   MKSALLRTGSVPVLSPAAAASSSFSNNKPLYGVFSCHKSSASSPKIYLHFEINHRRGKNS 60
           MKSALLRTGSVPVLSP AAAS SFSNNKPLYGVFSC+KSS SSPKI LHFEINHRRGKNS
Sbjct: 1   MKSALLRTGSVPVLSP-AAASFSFSNNKPLYGVFSCYKSSVSSPKISLHFEINHRRGKNS 60

Query: 61  GSIRGAASESDITRSMHEVSNSYDQSSGVRS-SRSRSRSFPSGIPEEEFLNEDEFDSDSM 120
             IR AASESDIT+S+HEV N +DQSSGVRS SRSRSRSFPSGIPEEE LNEDE D DSM
Sbjct: 61  SRIRRAASESDITQSLHEVLNPHDQSSGVRSRSRSRSRSFPSGIPEEELLNEDESDGDSM 120

Query: 121 EKGANFVADTFSNGSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHEVEKDTIRAEECY 180
           + G +FV+DTFSNGSN+ SKIGAYYE+LL+LNPSD LLLRNYGKFLHEV KDTIRAEECY
Sbjct: 121 KDGVDFVSDTFSNGSNDRSKIGAYYEELLKLNPSDALLLRNYGKFLHEVVKDTIRAEECY 180

Query: 181 SRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVE 240
           SRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASP+DCLVIGHYAHFLWQVE
Sbjct: 181 SRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPSDCLVIGHYAHFLWQVE 240

Query: 241 DDE-------AAEAPPAAMVAAY 256
           DDE       AAEAPPAA+V+AY
Sbjct: 241 DDEAAAAAAAAAEAPPAAVVSAY 262

[Close]

BLAST of Clc09G12650.1 vs. NCBI nr
Match: XP_022930988.1 (uncharacterized protein LOC111437316 [Cucurbita moschata] >KAG7036203.1 hypothetical protein SDJN02_03004 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 358.6 bits (919), Expect = 4.4e-95
Identity = 190/271 (70.11%), Postives = 223/271 (82.29%), Query Frame = 0


Query: 1   MKSALLRTGSVPVLSPAAAASSSFSNNKPLYGVFSCHKSSASSPKIYLHFEINHRRGKNS 60
           MKSALLRT S+PV+ P+  ASSSFSN +PL+GVF+ HKSS SSPKI LHFE+N+ RG+NS
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  GSIRGAASESDITRSMHEVSNSYDQSSGVRSSRSRSRSFPSGIPEEEFLNEDEFDSDSME 120
             IR A+SESDI+RS+HEVSN YDQ  GV  SRSR+RS  S IPEEEFLN+DEFDSDSME
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGV-GSRSRTRSSHSEIPEEEFLNQDEFDSDSME 120

Query: 121 -------------KGANFVADTFSNGSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHE 180
                         GA F  DTF +GSN+ +KIGAYYE+LL+LNP+D LLLRNYGKFLHE
Sbjct: 121 DDSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHE 180

Query: 181 VEKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLV 240
           VEKD +R+EECYSRAILA+P+DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLV
Sbjct: 181 VEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLV 240

Query: 241 IGHYAHFLWQVEDD---EAAEAPPAAMVAAY 256
           IG+YA+FLWQ+EDD   EAAE  PAAMVAA+
Sbjct: 241 IGYYAYFLWQIEDDEEEEAAEVWPAAMVAAF 270

[Close]

BLAST of Clc09G12650.1 vs. NCBI nr
Match: KAG6606262.1 (hypothetical protein SDJN03_03579, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 356.7 bits (914), Expect = 1.7e-94
Identity = 190/271 (70.11%), Postives = 222/271 (81.92%), Query Frame = 0


Query: 1   MKSALLRTGSVPVLSPAAAASSSFSNNKPLYGVFSCHKSSASSPKIYLHFEINHRRGKNS 60
           MKSALLRT S+PV+ P+  ASSSFSN +PL+GVF+ HKSS SSPKI LHFE+N+ RG+NS
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  GSIRGAASESDITRSMHEVSNSYDQSSGVRSSRSRSRSFPSGIPEEEFLNEDEFDSDSME 120
             IR A+SESDI+RS+HEVSN YDQ  GV  SRSR+RS  S IPEEEFLN DEFDSDSME
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGV-GSRSRTRSSHSEIPEEEFLNLDEFDSDSME 120

Query: 121 -------------KGANFVADTFSNGSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHE 180
                         GA F  DTF +GSN+ +KIGAYYE+LL+LNP+D LLLRNYGKFLHE
Sbjct: 121 DDSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHE 180

Query: 181 VEKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLV 240
           VEKD +R+EECYSRAILA+P+DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLV
Sbjct: 181 VEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLV 240

Query: 241 IGHYAHFLWQVEDD---EAAEAPPAAMVAAY 256
           IG+YA+FLWQ+EDD   EAAE  PAAMVAA+
Sbjct: 241 IGYYAYFLWQIEDDEEEEAAEVWPAAMVAAF 270

[Close]

BLAST of Clc09G12650.1 vs. NCBI nr
Match: XP_023532088.1 (uncharacterized protein LOC111794359 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 356.3 bits (913), Expect = 2.2e-94
Identity = 189/271 (69.74%), Postives = 222/271 (81.92%), Query Frame = 0


Query: 1   MKSALLRTGSVPVLSPAAAASSSFSNNKPLYGVFSCHKSSASSPKIYLHFEINHRRGKNS 60
           MKSALLRT S+PV+ P+  ASSSFSN +PL+GVF+ HKSS SSPKI LHFE+N+ RG+NS
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  GSIRGAASESDITRSMHEVSNSYDQSSGVRSSRSRSRSFPSGIPEEEFLNEDEFDSDSME 120
             IR A+SESDI+RS+HEVSN YDQ  GV  SRSR+RS  S IPEEEFLN+DEFDSDSME
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGV-GSRSRTRSSHSEIPEEEFLNQDEFDSDSME 120

Query: 121 -------------KGANFVADTFSNGSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHE 180
                         GA F  D F +GSN+ +KIGAYYE+LL+LNP+D LLLRNYGKFLHE
Sbjct: 121 DDSGCLDNGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHE 180

Query: 181 VEKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLV 240
           VEKD +R+EECYSRAILA+P+DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLV
Sbjct: 181 VEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLV 240

Query: 241 IGHYAHFLWQVEDD---EAAEAPPAAMVAAY 256
           IG+YA+FLWQ+EDD   EAAE  PAAMVAA+
Sbjct: 241 IGYYAYFLWQIEDDEEQEAAEVWPAAMVAAF 270

[Close]

BLAST of Clc09G12650.1 vs. NCBI nr
Match: XP_022995940.1 (uncharacterized protein LOC111491305 [Cucurbita maxima])

HSP 1 Score: 352.8 bits (904), Expect = 2.4e-93
Identity = 188/271 (69.37%), Postives = 221/271 (81.55%), Query Frame = 0


Query: 1   MKSALLRTGSVPVLSPAAAASSSFSNNKPLYGVFSCHKSSASSPKIYLHFEINHRRGKNS 60
           MKSAL RT S+PV+SP+  ASSSFSN +PL+GVF+ HKSS SSPKI L FE+N+ RG+NS
Sbjct: 1   MKSALFRTVSIPVISPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLLFEMNNPRGRNS 60

Query: 61  GSIRGAASESDITRSMHEVSNSYDQSSGVRSSRSRSRSFPSGIPEEEFLNEDEFDSDSME 120
             IR  +SESDI+RS+HEVSN YDQ  GV  SRSR+RS  S IPEEEFLN+DEFDSDSME
Sbjct: 61  SGIRRVSSESDISRSLHEVSNPYDQFGGV-GSRSRTRSSHSEIPEEEFLNQDEFDSDSME 120

Query: 121 K-------------GANFVADTFSNGSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHE 180
           +             GA F  DTF +GSN+ +KIGAYYE+LL+LNP+D LLLRNYGKFLHE
Sbjct: 121 EDSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHE 180

Query: 181 VEKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLV 240
           VEKD +R+EECYSRAILA+P+DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLV
Sbjct: 181 VEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLV 240

Query: 241 IGHYAHFLWQVEDD---EAAEAPPAAMVAAY 256
           IG YA+FLWQ+EDD   EAAE  PAAMVAA+
Sbjct: 241 IGCYAYFLWQIEDDEEQEAAEVWPAAMVAAF 270

[Close]

BLAST of Clc09G12650.1 vs. ExPASy TrEMBL
Match: A0A6J1EX26 (uncharacterized protein LOC111437316 OS=Cucurbita moschata OX=3662 GN=LOC111437316 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 2.1e-95
Identity = 190/271 (70.11%), Postives = 223/271 (82.29%), Query Frame = 0


Query: 1   MKSALLRTGSVPVLSPAAAASSSFSNNKPLYGVFSCHKSSASSPKIYLHFEINHRRGKNS 60
           MKSALLRT S+PV+ P+  ASSSFSN +PL+GVF+ HKSS SSPKI LHFE+N+ RG+NS
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  GSIRGAASESDITRSMHEVSNSYDQSSGVRSSRSRSRSFPSGIPEEEFLNEDEFDSDSME 120
             IR A+SESDI+RS+HEVSN YDQ  GV  SRSR+RS  S IPEEEFLN+DEFDSDSME
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGV-GSRSRTRSSHSEIPEEEFLNQDEFDSDSME 120

Query: 121 -------------KGANFVADTFSNGSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHE 180
                         GA F  DTF +GSN+ +KIGAYYE+LL+LNP+D LLLRNYGKFLHE
Sbjct: 121 DDSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHE 180

Query: 181 VEKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLV 240
           VEKD +R+EECYSRAILA+P+DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLV
Sbjct: 181 VEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLV 240

Query: 241 IGHYAHFLWQVEDD---EAAEAPPAAMVAAY 256
           IG+YA+FLWQ+EDD   EAAE  PAAMVAA+
Sbjct: 241 IGYYAYFLWQIEDDEEEEAAEVWPAAMVAAF 270

[Close]

BLAST of Clc09G12650.1 vs. ExPASy TrEMBL
Match: A0A6J1K5B2 (uncharacterized protein LOC111491305 OS=Cucurbita maxima OX=3661 GN=LOC111491305 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.2e-93
Identity = 188/271 (69.37%), Postives = 221/271 (81.55%), Query Frame = 0


Query: 1   MKSALLRTGSVPVLSPAAAASSSFSNNKPLYGVFSCHKSSASSPKIYLHFEINHRRGKNS 60
           MKSAL RT S+PV+SP+  ASSSFSN +PL+GVF+ HKSS SSPKI L FE+N+ RG+NS
Sbjct: 1   MKSALFRTVSIPVISPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLLFEMNNPRGRNS 60

Query: 61  GSIRGAASESDITRSMHEVSNSYDQSSGVRSSRSRSRSFPSGIPEEEFLNEDEFDSDSME 120
             IR  +SESDI+RS+HEVSN YDQ  GV  SRSR+RS  S IPEEEFLN+DEFDSDSME
Sbjct: 61  SGIRRVSSESDISRSLHEVSNPYDQFGGV-GSRSRTRSSHSEIPEEEFLNQDEFDSDSME 120

Query: 121 K-------------GANFVADTFSNGSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHE 180
           +             GA F  DTF +GSN+ +KIGAYYE+LL+LNP+D LLLRNYGKFLHE
Sbjct: 121 EDSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHE 180

Query: 181 VEKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLV 240
           VEKD +R+EECYSRAILA+P+DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLV
Sbjct: 181 VEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLV 240

Query: 241 IGHYAHFLWQVEDD---EAAEAPPAAMVAAY 256
           IG YA+FLWQ+EDD   EAAE  PAAMVAA+
Sbjct: 241 IGCYAYFLWQIEDDEEQEAAEVWPAAMVAAF 270

[Close]

BLAST of Clc09G12650.1 vs. ExPASy TrEMBL
Match: A0A6J1HRN2 (uncharacterized protein LOC111466874 OS=Cucurbita maxima OX=3661 GN=LOC111466874 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.9e-92
Identity = 194/273 (71.06%), Postives = 212/273 (77.66%), Query Frame = 0


Query: 1   MKSALLRTGSVPVLSPAAAASSSFSNNKPLYGVFSCHKSSASSPKIYLHFEINHRRGKNS 60
           M+SAL+RT SVPVLS A AASSSFSN KPLYG  S   SS SSPKI LHFEINHRRGKN 
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  GSIRGAASESDITRSMHEVSNSYDQSSGVRSSRSRSRSFPSGIPEEEFLNEDEFDSDSME 120
             IR AASESDI+RS+HEVS+ YDQ  G    RSR  S PSGIPEEEFLN+DEF  DS+ 
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGF---RSRYWSVPSGIPEEEFLNQDEFHRDSVA 120

Query: 121 ------------KGANFVA-DTFSNGSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHE 180
                        G +FVA D F++GS+  SKI AYYE++L+ NPSDPL+LRNYGKFLHE
Sbjct: 121 DTEFLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHE 180

Query: 181 VEKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLV 240
           VEKDT RAEECYSRAILASP DGELLALYGKLVWDTQRDKRRAQYYFDRAV ASPNDCLV
Sbjct: 181 VEKDTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLV 240

Query: 241 IGHYAHFLWQVEDDE-----AAEAPPAAMVAAY 256
           IG+YAHFLW VEDDE      A AP  A+VAA+
Sbjct: 241 IGYYAHFLWLVEDDEEEATAVALAPAPALVAAF 270

[Close]

BLAST of Clc09G12650.1 vs. ExPASy TrEMBL
Match: A0A6J1HIV3 (uncharacterized protein LOC111463957 OS=Cucurbita moschata OX=3662 GN=LOC111463957 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 3.2e-91
Identity = 191/272 (70.22%), Postives = 209/272 (76.84%), Query Frame = 0


Query: 1   MKSALLRTGSVPVLSPAAAASSSFSNNKPLYGVFSCHKSSASSPKIYLHFEINHRRGKNS 60
           M+SAL+RT SVPVLS A AASSSFSN KPLYG  S   SS SSPKI LHFEINHRRGKN 
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  GSIRGAASESDITRSMHEVSNSYDQSSGVRSSRSRSRSFPSGIPEEEFLNEDEFDSDSME 120
             IR AASESDI+RS+HEVS+ YDQ  G    RSR  S PS IPE+EFLN+DEF  DS  
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGF---RSRYWSVPSEIPEDEFLNQDEFHRDSFA 120

Query: 121 ------------KGANFVADTFSNGSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHEV 180
                        G +FVAD FS+GS+  SKI AYYE++L+ NPSD L+LRNYGKFLHEV
Sbjct: 121 DTEFLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEV 180

Query: 181 EKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVI 240
           EKD+ RAEECYSRAILASP DGELLALYGKLVWDTQRDKRRAQYYFDRAV ASPNDCLVI
Sbjct: 181 EKDSKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVI 240

Query: 241 GHYAHFLWQVEDDE-----AAEAPPAAMVAAY 256
           G+YAHFLW VEDDE      A AP  A+VAA+
Sbjct: 241 GYYAHFLWLVEDDEEEATAVAPAPAPALVAAF 269

[Close]

BLAST of Clc09G12650.1 vs. ExPASy TrEMBL
Match: A0A5D3E5U4 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004600 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.1e-88
Identity = 186/257 (72.37%), Postives = 207/257 (80.54%), Query Frame = 0


Query: 1   MKSALLRTGSVPVLSPAAAASSSFSNNKPLYGVFSCHKSSASSPKIYLHFEINHRRGKNS 60
           MKSALLRTGSVP+LSP   AS   +N +PLYGV SCH SSASSP+I LH   N     NS
Sbjct: 1   MKSALLRTGSVPLLSPTTTAS---NNKQPLYGVLSCHNSSASSPRISLHCTRN-----NS 60

Query: 61  GSIRGAASESDITRSMHEVSNSYDQSSGVRSSRSRSRSFPSGIPEEEFLNE-DEFDSDSM 120
             IR AASESDI RS+HEVSN+ DQ SG+ +SRS SRSFPS IPEEEF++E D+FDSDSM
Sbjct: 61  NRIRRAASESDIVRSLHEVSNTSDQFSGL-ASRSLSRSFPSKIPEEEFIDEDDQFDSDSM 120

Query: 121 EKGANFVADTFSNGSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHEVEKDTIRAEECY 180
           E+   ++   +  G N+ SKIGAYYE +L+LNPSD LLLRNYGKFLHEV  DT RAEECY
Sbjct: 121 EEDKEYL--NYRVGVNDRSKIGAYYEHMLKLNPSDALLLRNYGKFLHEVVNDTKRAEECY 180

Query: 181 SRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVE 240
           SRAILASPTDGELLALYGKLVWDT+RDK+RAQYYFDRAVYASPNDCLV GHYAHF+WQVE
Sbjct: 181 SRAILASPTDGELLALYGKLVWDTERDKQRAQYYFDRAVYASPNDCLVTGHYAHFMWQVE 240

Query: 241 DDEA--AEAPPAAMVAA 255
           DDEA  AE  PA MV A
Sbjct: 241 DDEAALAEDSPAGMVTA 246

[Close]

BLAST of Clc09G12650.1 vs. TAIR 10
Match: AT4G17940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 159.5 bits (402), Expect = 3.7e-39
Identity = 103/266 (38.72%), Postives = 147/266 (55.26%), Query Frame = 0


Query: 1   MKSALLRTGSVPVLSPAAAASSSFSNNKPLYGVFSCHKSSASSPKIYLHFEINHRRGKNS 60
           MKS L+RTGS+PVL     +  S     P+    S  +S +S  + +   +I+     N 
Sbjct: 1   MKSLLMRTGSMPVLQNRLISGGSSRKMTPISRTNSV-ESLSSYGERFAGGKISIEVKANV 60

Query: 61  GSIRGAASESDITRSMHEVSNSYDQSSGVRSSRSRSRSFPSGIPEEEFLNEDE------- 120
           G +R   SESD+ RS   +             R  S+  P+ IPE++   E+E       
Sbjct: 61  G-MRRVLSESDVIRSERML------------KRVGSKPSPARIPEDDEAGEEEIRFADGW 120

Query: 121 --------------FDSDSMEKGANFVADTFSNGSNNH---SKIGAYYEQLLQLNPSDPL 180
                         F    +  G+ +     + G   +   SKIG YY ++L+ NP++ L
Sbjct: 121 GSMISGGLPVEEKCFTGGGVGGGSGYSGGYGNGGGGGYEDKSKIGDYYREMLRSNPNNSL 180

Query: 181 LLRNYGKFLHEVEKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDR 240
           LL NYGKFL+EVEKD   AEE Y RAIL +P DGE L++YG+L+W+T+RD++RAQ YFD+
Sbjct: 181 LLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQGYFDQ 240

Query: 241 AVYASPNDCLVIGHYAHFLWQVEDDE 243
           AV ASPNDC+V+G YA F+W+ EDD+
Sbjct: 241 AVNASPNDCMVLGSYARFMWEAEDDD 252

[Close]

BLAST of Clc09G12650.1 vs. TAIR 10
Match: AT5G20190.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 6.1e-26
Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 133 GSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHEVEKDTIRAEECYSRAILASPTDGEL 192
           G         +Y ++++ NP + + L NY KFL EV KD ++AEE   RAIL SP DG +
Sbjct: 149 GDGGDDNTDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNV 208

Query: 193 LALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDEAAE 246
           LA+Y +LVW   +D  RA+ YF++AV A+P DC V   YA FLW  E++E  E
Sbjct: 209 LAMYAELVWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWDAEEEEEEE 261

[Close]

BLAST of Clc09G12650.1 vs. TAIR 10
Match: AT4G32340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 2.6e-24
Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 133 GSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHEVEKDTIRAEECYSRAILA-SPTDGE 192
           G      +  YYE+++Q  P D LLL NY +FL EV+ D  +AEE   RA+L+ S  DGE
Sbjct: 103 GGGGGGSVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGE 162

Query: 193 LLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDEAAE 246
           LL++YG L+W    D  RAQ Y+D+AV +SP+DC V+  YA FLW  E++   E
Sbjct: 163 LLSMYGDLIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDAEEEVEEE 216

[Close]

BLAST of Clc09G12650.1 vs. TAIR 10
Match: AT1G80130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-22
Identity = 51/125 (40.80%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 122 GANFVADTFSNGSNNHSKIGAYYEQLLQLNPSDPLLLRNYGKFLHEVEKDTIRAEECYSR 181
           G   V  +  +G  +      YY +++  NP + LL  NY KFL EV+ D  +AEE   R
Sbjct: 147 GGGGVGGSGVDGGRSEDATDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCER 206

Query: 182 AILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDD 241
           AIL +  DG +L+LY  L+    +D++RA  Y+ +AV  SP DC V   YA FLW V++D
Sbjct: 207 AILGNTNDGNVLSLYADLILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDED 266

Query: 242 EAAEA 247
           E  EA
Sbjct: 267 EEDEA 271

[Close]

BLAST of Clc09G12650.1 vs. TAIR 10
Match: AT1G04530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-20
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 141 GAYYEQLLQLNPSDPLLLRNYGKFLHEVEKDTIRAEECYSRAILASPTDGELLALYGKLV 200
           G YY+ +L+  P  PLLL+NY KFL E + D   AEE Y +  +  P+DG  LA YG+LV
Sbjct: 122 GDYYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLV 181

Query: 201 WDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDEAAE 246
               +D+ +A  YF+RAV ASP+D +V+  YA FLW++  D+  E
Sbjct: 182 MKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINADDDDE 225

The following BLAST results are available for this feature:

BLAST of Clc09G12650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888361.1	2.3e-115	85.55	uncharacterized protein LOC120078207 [Benincasa hispida]	[more]
XP_022930988.1	4.4e-95	70.11	uncharacterized protein LOC111437316 [Cucurbita moschata] >KAG7036203.1 hypothet...	[more]
KAG6606262.1	1.7e-94	70.11	hypothetical protein SDJN03_03579, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023532088.1	2.2e-94	69.74	uncharacterized protein LOC111794359 [Cucurbita pepo subsp. pepo]	[more]
XP_022995940.1	2.4e-93	69.37	uncharacterized protein LOC111491305 [Cucurbita maxima]	[more]

BLAST of Clc09G12650.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G12650.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EX26	2.1e-95	70.11	uncharacterized protein LOC111437316 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]
A0A6J1K5B2	1.2e-93	69.37	uncharacterized protein LOC111491305 OS=Cucurbita maxima OX=3661 GN=LOC111491305...	[more]
A0A6J1HRN2	4.9e-92	71.06	uncharacterized protein LOC111466874 OS=Cucurbita maxima OX=3661 GN=LOC111466874...	[more]
A0A6J1HIV3	3.2e-91	70.22	uncharacterized protein LOC111463957 OS=Cucurbita moschata OX=3662 GN=LOC1114639...	[more]
A0A5D3E5U4	1.1e-88	72.37	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Clc09G12650.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17940.1	3.7e-39	38.72	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G20190.1	6.1e-26	45.13	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G32340.1	2.6e-24	46.49	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G80130.1	1.4e-22	40.80	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G04530.1	1.3e-20	45.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 123..247 e-value: 4.3E-13 score: 51.1
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 136..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..99
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 1..244
None	No IPR available	PANTHER	PTHR26312:SF123	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 1..244

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc09G12650	Clc09G12650	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc09G12650.1-exon	Clc09G12650.1-exon-ClcChr09:11637380..11638136	exon
Clc09G12650.1-exon	Clc09G12650.1-exon-ClcChr09:11638246..11638418	exon
Clc09G12650.1-exon	Clc09G12650.1-exon-ClcChr09:11638506..11638942	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc09G12650.1-five_prime_utr	Clc09G12650.1-five_prime_utr-ClcChr09:11637380..11637635	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc09G12650.1-cds	Clc09G12650.1-cds-ClcChr09:11637636..11638136	CDS
Clc09G12650.1-cds	Clc09G12650.1-cds-ClcChr09:11638246..11638418	CDS
Clc09G12650.1-cds	Clc09G12650.1-cds-ClcChr09:11638506..11638599	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc09G12650.1-three_prime_utr	Clc09G12650.1-three_prime_utr-ClcChr09:11638600..11638942	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc09G12650.1	Clc09G12650.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding