Clc09G11440.2 (mRNA) Watermelon (cordophanus) v2

Overview
NameClc09G11440.2
TypemRNA
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr09: 10127209 .. 10128178 (+)
Sequence length543
RNA-Seq ExpressionClc09G11440.2
SyntenyClc09G11440.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAAAGTTTGTTGGATCCATTGCAAATGCTGTTTCTTGTTGTGTTTCAATGGGCAAGAGTTTTCTCTCCAACTTATGCAGACGGACATTTGGGGAGCTTTGATTTCAGGGTTCATCAGGTAAATTTTATCTTTTCAATGCTGTATCACAGTGATAATCGTATGTTAACATACTTTTTTAGATTGCTAGGAAAATAAGTGTTTTTTCTTTTAAATATTTTTTCAGAAAACTATTTATAATTAAAACACTTTATCAAAAGGGTTTTTGTACATTAGTTTTTTTTTTTTTGGTTTGGTTTGTTGATGTTCAACATTAAAAAGTGTTCTACTAATATCAAATCACTTTGATTTTTTTTAATATTTAATTTTTTTTTAAGTTAAAAGGTAGAGTGACTGTTAAACACTATGAATTAATAATTTTAAATTTACAGGTTTCTAAATTTGGTCACCGGGAGTGGTCCATTGTCAAAGGTCTTGATCCCTAGTCACAAACTAACAGTAGCCAGTCTCAGTCTTTGGTCATGTTCCCCGGTGTCTAGTCCCAATTGTTGCCGCCACCAATGACCAGGACCGACAACAAGTGGCCAGTGACCATGATCAGGACCGGTGACTAGCAACCTGGACTGAGGACCAGCGACCAGGTCTAGGAACCAATGATGTGGACTGAACCAATGCCCAACGACTACTCTGCCAACAGGGACCTGTTTTCAGCAAATGAGGACAAGGCTTGGGGGATCGGTCACTGGCGATTGGTCATTAGTCCTCTGCGAGGGGGACCTGTTTTGGTCGGAAGTGGTCATTGGTCATTAGTCTTCGGTCTCAATTTTTGGTCGGTGGTCGGTGGTAGTGGGTGGTTGTCACTGATCCCCCAATTGCTGGTCTCGGTCCCAGATCCTCAACCATCGGTTGCCAATCTTGGTCCATGGTCATGGTTATCGATCTCCAGTCTCAATGCCGGCCATCAGTAG

mRNA sequence

ATGATTAAAGTTTGTTGGATCCATTGCAAATGCTGTTTCTTGTTGTGTTTCAATGGGCAAGAGTTTTCTCTCCAACTTATGCAGACGGACATTTGGGGAGCTTTGATTTCAGGGTTCATCAGGTTTCTAAATTTGGTCACCGGGAGTGGTCCATTGTCAAAGGTCTTGATCCCTAGTCACAAACTAACAGTAGCCAGTCTCAGTCTTTGGTCATGTTCCCCGGAACCAATGATGTGGACTGAACCAATGCCCAACGACTACTCTGCCAACAGGGACCTGTTTTCAGCAAATGAGGACAAGGCTTGGGGGATCGGTCACTGGCGATTGGTCATTAGTCCTCTGCGAGGGGGACCTGTTTTGGTCGGAAGTGGTCATTGGTCATTAGTCTTCGGTCTCAATTTTTGGTCGGTGGTCGGTGGTAGTGGGTGGTTGTCACTGATCCCCCAATTGCTGGTCTCGGTCCCAGATCCTCAACCATCGGTTGCCAATCTTGGTCCATGGTCATGGTTATCGATCTCCAGTCTCAATGCCGGCCATCAGTAG

Coding sequence (CDS)

ATGATTAAAGTTTGTTGGATCCATTGCAAATGCTGTTTCTTGTTGTGTTTCAATGGGCAAGAGTTTTCTCTCCAACTTATGCAGACGGACATTTGGGGAGCTTTGATTTCAGGGTTCATCAGGTTTCTAAATTTGGTCACCGGGAGTGGTCCATTGTCAAAGGTCTTGATCCCTAGTCACAAACTAACAGTAGCCAGTCTCAGTCTTTGGTCATGTTCCCCGGAACCAATGATGTGGACTGAACCAATGCCCAACGACTACTCTGCCAACAGGGACCTGTTTTCAGCAAATGAGGACAAGGCTTGGGGGATCGGTCACTGGCGATTGGTCATTAGTCCTCTGCGAGGGGGACCTGTTTTGGTCGGAAGTGGTCATTGGTCATTAGTCTTCGGTCTCAATTTTTGGTCGGTGGTCGGTGGTAGTGGGTGGTTGTCACTGATCCCCCAATTGCTGGTCTCGGTCCCAGATCCTCAACCATCGGTTGCCAATCTTGGTCCATGGTCATGGTTATCGATCTCCAGTCTCAATGCCGGCCATCAGTAG

Protein sequence

MIKVCWIHCKCCFLLCFNGQEFSLQLMQTDIWGALISGFIRFLNLVTGSGPLSKVLIPSHKLTVASLSLWSCSPEPMMWTEPMPNDYSANRDLFSANEDKAWGIGHWRLVISPLRGGPVLVGSGHWSLVFGLNFWSVVGGSGWLSLIPQLLVSVPDPQPSVANLGPWSWLSISSLNAGHQ
Homology
The following BLAST results are available for this feature:
BLAST of Clc09G11440.2 vs.
Match NameE-valueIdentityDescription
BLAST of Clc09G11440.2 vs.
Match NameE-valueIdentityDescription
BLAST of Clc09G11440.2 vs.
Match NameE-valueIdentityDescription
BLAST of Clc09G11440.2 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Clc09G11440Clc09G11440gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc09G11440.2-exonClc09G11440.2-exon-ClcChr09:10127209..10127330exon
Clc09G11440.2-exonClc09G11440.2-exon-ClcChr09:10127642..10127741exon
Clc09G11440.2-exonClc09G11440.2-exon-ClcChr09:10127858..10128178exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc09G11440.2-cdsClc09G11440.2-cds-ClcChr09:10127209..10127330CDS
Clc09G11440.2-cdsClc09G11440.2-cds-ClcChr09:10127642..10127741CDS
Clc09G11440.2-cdsClc09G11440.2-cds-ClcChr09:10127858..10128178CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Clc09G11440.2Clc09G11440.2-proteinpolypeptide