Clc09G11220.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc09G11220.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr09: 9917558 .. 9918315 (-)
Sequence length	540
RNA-Seq Expression	Clc09G11220.1
Synteny	Clc09G11220.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAATCTCAACCCAACGAGTTCTCGATCTTATCTCTAAATAAGTTTCTTCAACTAGATGTCCACCGGACTGCATCCCGCTTCCCATTTCATTTCCTATCATCAAAGTATAAGGTCCATTGCTCATCTTCTAATGTTGCAATCTGTTCGAGATCACCAGAAATTTCTGAAGAAAGCTCGATAGGGTCTTTTGATGGGCCAGTTACATATACACCTTTTGAATTTGAATAGAAATTACTAAATTTTTCTTCCCATTTCGTCTTTGTTTCCCTCCTAAATGAGAGATCCTTGCCCAGGCCGGTCTCCACGGGTTCATCTTGAAGTAAAAATGAACACCTCTATCCTCAACCGCTCAAGGGTGTCGTGAACCATTGTCACTCAAGGCTTTATTTTATTTTATTTTATTTATTTTATTATTATTTTTATATTTCCCTTTTTTTCCATCCCAGCTTTCTTGTTTACTCTAAAACCCTACTACAGGTCCAGGCATCCCCTCCCTCCCATTACCACCCAACTGAACCCCGACACGCCGTTCCTGCCCCGACGCTGTCTCACCGGCTGCCGGCGCACTCAGCTGCCGGAGTACCCCAGCCTTCCCTCTCGGCCTCGCCGATTTTCTGCTATCTCCAACGCTGGCATCTCTCTGTTCTTCTCATAATTGTCGGTTCTTTTAACCTATCTTCCTCATTATACTTTTAGAAATTTTGTTTTCTGTTACCAAAATGATCTTAGGGCACATGAAATAAATTCTTGCAGTGA

mRNA sequence

ATTAATCTCAACCCAACGAGTTCTCGATCTTATCTCTAAATAAGTTTCTTCAACTAGATGTCCACCGGACTGCATCCCGCTTCCCATTTCATTTCCTATCATCAAAGTATAAGGTCCATTGCTCATCTTCTAATGTTGCAATCTGTTCGAGATCACCAGAAATTTCTGAAGAAAGCTCGATAGGGTCTTTTGATGGGCCAGTTACATATACACCTTTTGAATTTGAATAGAAATTACTAAATTTTTCTTCCCATTTCGTCTTTGTTTCCCTCCTAAATGAGAGATCCTTGCCCAGGCCGGTCTCCACGGGTTCATCTTGAAGTAAAAATGAACACCTCTATCCTCAACCGCTCAAGGGTCCAGGCATCCCCTCCCTCCCATTACCACCCAACTGAACCCCGACACGCCGTTCCTGCCCCGACGCTGTCTCACCGGCTGCCGGCGCACTCAGCTGCCGGAGTACCCCAGCCTTCCCTCTCGGCCTCGCCGATTTTCTGCTATCTCCAACGCTGGCATCTCTCTGTTCTTCTCATAATTTGA

Coding sequence (CDS)

ATGAGAGATCCTTGCCCAGGCCGGTCTCCACGGGTTCATCTTGAAGTAAAAATGAACACCTCTATCCTCAACCGCTCAAGGGTCCAGGCATCCCCTCCCTCCCATTACCACCCAACTGAACCCCGACACGCCGTTCCTGCCCCGACGCTGTCTCACCGGCTGCCGGCGCACTCAGCTGCCGGAGTACCCCAGCCTTCCCTCTCGGCCTCGCCGATTTTCTGCTATCTCCAACGCTGGCATCTCTCTGTTCTTCTCATAATTTGA

Protein sequence

MRDPCPGRSPRVHLEVKMNTSILNRSRVQASPPSHYHPTEPRHAVPAPTLSHRLPAHSAAGVPQPSLSASPIFCYLQRWHLSVLLII

Homology

The following BLAST results are available for this feature:

BLAST of Clc09G11220.1 vs.


Match Name	E-value	Identity	Description

BLAST of Clc09G11220.1 vs.


Match Name	E-value	Identity	Description

BLAST of Clc09G11220.1 vs.


Match Name	E-value	Identity	Description

BLAST of Clc09G11220.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..64

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc09G11220	Clc09G11220	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc09G11220.1-exon	Clc09G11220.1-exon-ClcChr09:9917558..9917560	exon
Clc09G11220.1-exon	Clc09G11220.1-exon-ClcChr09:9917657..9917836	exon
Clc09G11220.1-exon	Clc09G11220.1-exon-ClcChr09:9917959..9918315	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc09G11220.1-cds	Clc09G11220.1-cds-ClcChr09:9917558..9917560	CDS
Clc09G11220.1-cds	Clc09G11220.1-cds-ClcChr09:9917657..9917836	CDS
Clc09G11220.1-cds	Clc09G11220.1-cds-ClcChr09:9917959..9918039	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc09G11220.1-five_prime_utr	Clc09G11220.1-five_prime_utr-ClcChr09:9918040..9918315	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc09G11220.1	Clc09G11220.1-protein	polypeptide