Clc09G01700.2 (mRNA) Watermelon (cordophanus) v2

Overview
NameClc09G01700.2
TypemRNA
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr09: 1418084 .. 1422489 (+)
Sequence length582
RNA-Seq ExpressionClc09G01700.2
SyntenyClc09G01700.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAGATTGAAGCGTCTAGGGATAATGGAAATGATTATAATAGTAAGGATCTCTTTGTAGATGCAGAGCTCGAAGGTGCGTTTCTGAGTTTGGAAGAAAACTGGAGAATGGAAATGGGAGACACGCTGAAGGATGGTATTAAACGAAGATCGGAGAGAAGAAAATGGGAATTTTCAGTAATGTGGAAAACTTTTTATTGTTTGTTTTAGAAAATTAAAAATGGGGAGAGAGGTTCTGATTTTCTTTACTGACCAGTAGGGTACCTTGGCCAATGAGAATTTGAAACGTATTGAGAGTTGGTAAACGTCAGCGTATACTTGTTAACTTTAATAAACACCGTAATCTAACGGAAATAACAATCAAAAGAGTCCTCTTCAATCCGAACTGAGTTTTTTTTTTTTTTTTTTTGACAAATTATAATAATAAATCTAAAGTATGGTAGTAGTTGCAATTACGATTTTAAACTTTTCCTGACCAGCATGGATTTAACCATTAACCTGTTAGTCATTTTTTGAGACTATATCTCCTCTTTATCACTAGGTCAACCCATGATGGTTATTTATCATTAAATCTTTAGTTTTCGGATTCTCTACCAAACATGCCTAAACTTCTACTAGTGCTAAAATTTGACCCTCAAATTTACAATAGCTATAAAAATTAAGTCTACAAATGATAAAATTTGAACCTCAAACTTATACCAATGTTAAAATTTATTCAATTACGTAAGTTTGAAGGTCTAATTTGACCTAATTTAAAAGCTCGTTTTATTTTGAGGATTTAACTTTTAAAAATAAAAATTTAAGGGTATACTTGCAACTATTACCATATTTTAGAGTTGATGATTTTGCAATTTATCCCTTTTTCATTTTCTTTTAAAAATCAATCTAGAGTTGTATTAATTAAAACCCTAAATAAATTGATTGAGATCGTTAATTAAAATTCTCTTTATTAATACATCTTTTTCCCACCATATAATGGATGTACAAATTAATGAAGTGATATAAAAAAAATATAATAATTAAATTCATAATTGTACATGTCATTTTTCTTAGTATGATATAGACAAGAAGATTGCACATGTCGTTCTTCTTAGTATAATATAGGCAAGAAGATTTCAAACTAGGGACGTTTTAGTCCAAACACTTTATGTCATTTGCTCATTTTGGCATAATTGCGGATACCATTGATATAAGCGGCTTTTCATACTTCATTCTTTCTCTATTTTTATACGTAAATGAGAAGAATCGTGTGACTATGCTTTCTTCCTATCTTTATAAGATTTTGATAGGATGGTAAATTTCTTAAGGTAATTTTAGGTCGCTTTAAATGACCAAATTAAGATGGTCAAAAATCGCAAATATATTTTATAAATTGATTCAGTTGTAAAAGTTTAGAGAAATTGGTATGATTATTAGTTTGAGTATTTAATTGATACAAACTCGAAGTTCATAGTTATAAATTGGTTTCTACCAAAATTTTAGTAGGTTGAAATTTATATATATATTAATGAAGAAAAAATAAACTTAATGTATATGTTATAATTTTTTACTTGTTTCATAACGACCCTTTCGATTGACTTTTTTATTATACACATTTTTGATGTGATAGTGATTTGTAAATTGGATAGGTTAACTGTTTTAATATCGTTTCAAATTTTATATTTATAATTTTAACCATTAATGTCTACAAACTTTGTTAGTTTTTTCGTTCAAATGAGTTGTTAATTACTCCTAGATTATTTGAACATAGGTCGTCCACTTTCATCTTCAACATTTTTTCTTATCGTTTAACTTATTTCGTTAGGTCCAATTTATCCAAAATATTTGCCCCAAACTACCAAGTTGGGATTATGAGTAAGTTTTTTAATTGTTAAGTTCAATACTTAGAGTTTTTTTTTTCTTTTTTTTAATAAGAAACATTTTATTGATATATGAAATATCCAAAGAGTTATAAGAGAGACCAATATGATAGATACAAAGATGCCAAAGAAAAAGGAGACCAAGATAAACAAAAGACGAGAAAAAAGAAAAAAAAATTGACACTTGGAGGTTAATTTAAGAGTATTGTTTTATAGAGCCCACAATTTTACAAAAGGACAAATGATTATAACAAATTGGCTATCAATTTTCAATGTGCATTAGAAATATTCGAGTTTGAATAAAACTTATCAGAATTTTTGCAATTTGGTATATATCTTATAGGTCGAAAGTCGATTTAATTTATTTTATTTTTTGAGCCCCTAATATTATTTGATGTTCAGTTGATTGTAGCCCTTAGGGTTTGCACTTTCATCGGTTTTTTTTACTGTAGGTTGAAACAATCCAATAATATTTTCACAGTAAGATTTTTATACTTCCTATGGTTTATCTTTTCTTTGTGCTTGTGGCTGTATATGCACAATTTTGTTAATTTTTTTTACCACGAGAATTTCATATTAGCTAGATTGCAAATAAGTTCAACTTGATTTCGATATTTTTAATTTTAAAATACAGTAATCTCATCCTCATCGACAATATTAATTATTGACCTAAATTTATATTTTGAAGGAAAATATGTCTTGCAAAATATAGGGAAAAAGTTTTGATGCAAAAGTAAGAAATAGAAAAACTTACGTAGAAGGAATAAGTCAAAACTTAGATTCTATCCAGTTAATGTATTCATACAAAAAATGAAAGTTTACTGCTCTCTCTTAAGAGTATGGCAAGGTAGGATTTTTCCTTATCATACACAAATTAGGATTTACTGGCCATATCGTTGGACCATGTCTTATTTAAGTTAGGTTAACTTTGATCTTAGACGTCATAGCTCCTCCAAGAAAAAAAAAAAATCATATGTGAAACCCCAAATCTCATGTAGTTTGTATTTTTAAATTAAACAAAAAATAAAAATTGATGCATCATCTTAATTTTGTTGTACGAATAGATTCTTTGCTTCCCAACCATGCAAAGTTATTCTAACATGTTTACATAAAAGGTCATTATATAATATACTTAAATAGTTGCTCTTAAACTTGTAAAATTGTTGCAATTAGTCATGAGTAGAGACGGTAAAGTTATTATTTCATACAACGGTAAGGATTTTGTAGTTTAAACGAAAAATCTTGTTCTAACTTTGACTACTAAAAGAGGAAGATAACGAAGAGAAAAAAGTTAAAGTGAGTTGAGTTCAATGATAATTGGCATGACCATTTCTATAGATCTAAGTTTCAATCCCCCATCATCATCACTTTTTTCTCTCTTTAAAACATTGTTCAAATCTCAATGCTTTTTGCAAAATTGAAAATAAAGACATTTATAAAAAAAATAAAGTTGTTTTCAAATATAGCAAAATAATCAAACTTATTTACAAATATAACAAATGTCATGATCTATCATTAACAGATAGTGATAGACACTAATAAACATCTATTAGTGACACAATAACATTTAACAGTATTTAAAATCGTTATTTTATAAAGATATTTTAGTTTTTTGTTATTTTAAAATAGGAAACACAATTTTTTTTATTTTTATTTTTTATTTTTAAGTATACGACCATTTGACATATAATTGCTTTTGATTTTTAGTTTTTGCAAAAATAATCAATTTAGCATAAGTTGGATTTTGTGTTTTTTCACTATAAAAATGTTGAGAAATTATTATTTTCGGTAGGAAACTTACTATAAATAAAAAATATAAAACTATTGTAAATATAGAATCTTTATCCCAAAGTAATAAAAGTTTATTATGGTTAGGCAGATTTTTTTTTATATATTTATAAATAATTTAAAAAATAAATAATAAATAAAATTAAAAACCAAAAACAAAAAACGCAATACGGGTAGAAAAACGTTATAAAATCACATGGTATAAAAATCCATAAACAAAAAACGCAATACGGGTAGAAAAACGTTATAAAATCGCATAGTATAAAAATCCCGAATCAAAATATGTGTTAAACGGCAAGCGGGGGACATACAGAGGCACGTCTGTCGCTGGTTTCTAGAACCTTCTCTCTTCTCTCTTCTCTCCGAGCTCAATCCGCCGTTGATCCCAATTGGTTTAGATCGCATCTTCAACCCTCCCCTTCCCGAGGAGAGATCATCCACCTGAAAAGCAATGTGATCGTCGATCGTCTTCTTTTCAAAGCTACTTTGCATCAGAACAAGGAGATTTCATCATCGTGTTGCGGATTTCGTGTTCGTCTGTTGGATTATCCACTCTCTTTGATGGTAATTTCAACAAAATCTCAAATCTTCTTCTTATACCACCGTTCTCTTCTGATCACTCCCTCTCCCTCTCTCTCCCCGAGCTTATTTTTTCCGCAAATGGAGGAAATTGACTTCTTCAACTCACTACACATTGCCATTGTGTTAGGCATAAAGAACTTTGAACTATCAACTCGATATCCTCGTACGCACTGA

mRNA sequence

ATGGCAGAGATTGAAGCGTCTAGGGATAATGGAAATGATTATAATAGTAAGGATCTCTTTGTAGATGCAGAGCTCGAAGGTGCGTTTCTGAGTTTGGAAGAAAACTGGAGAATGGAAATGGGAGACACGCTGAAGGATGAGGCACGTCTGTCGCTGGTTTCTAGAACCTTCTCTCTTCTCTCTTCTCTCCGAGCTCAATCCGCCGTTGATCCCAATTGGTTTAGATCGCATCTTCAACCCTCCCCTTCCCGAGGAGAGATCATCCACCTGAAAAGCAATGTGATCGTCGATCGTCTTCTTTTCAAAGCTACTTTGCATCAGAACAAGGAGATTTCATCATCGTGTTGCGGATTTCGTGTTCGTCTGTTGGATTATCCACTCTCTTTGATGGTAATTTCAACAAAATCTCAAATCTTCTTCTTATACCACCGTTCTCTTCTGATCACTCCCTCTCCCTCTCTCTCCCCGAGCTTATTTTTTCCGCAAATGGAGGAAATTGACTTCTTCAACTCACTACACATTGCCATTGTGTTAGGCATAAAGAACTTTGAACTATCAACTCGATATCCTCGTACGCACTGA

Coding sequence (CDS)

ATGGCAGAGATTGAAGCGTCTAGGGATAATGGAAATGATTATAATAGTAAGGATCTCTTTGTAGATGCAGAGCTCGAAGGTGCGTTTCTGAGTTTGGAAGAAAACTGGAGAATGGAAATGGGAGACACGCTGAAGGATGAGGCACGTCTGTCGCTGGTTTCTAGAACCTTCTCTCTTCTCTCTTCTCTCCGAGCTCAATCCGCCGTTGATCCCAATTGGTTTAGATCGCATCTTCAACCCTCCCCTTCCCGAGGAGAGATCATCCACCTGAAAAGCAATGTGATCGTCGATCGTCTTCTTTTCAAAGCTACTTTGCATCAGAACAAGGAGATTTCATCATCGTGTTGCGGATTTCGTGTTCGTCTGTTGGATTATCCACTCTCTTTGATGGTAATTTCAACAAAATCTCAAATCTTCTTCTTATACCACCGTTCTCTTCTGATCACTCCCTCTCCCTCTCTCTCCCCGAGCTTATTTTTTCCGCAAATGGAGGAAATTGACTTCTTCAACTCACTACACATTGCCATTGTGTTAGGCATAAAGAACTTTGAACTATCAACTCGATATCCTCGTACGCACTGA

Protein sequence

MAEIEASRDNGNDYNSKDLFVDAELEGAFLSLEENWRMEMGDTLKDEARLSLVSRTFSLLSSLRAQSAVDPNWFRSHLQPSPSRGEIIHLKSNVIVDRLLFKATLHQNKEISSSCCGFRVRLLDYPLSLMVISTKSQIFFLYHRSLLITPSPSLSPSLFFPQMEEIDFFNSLHIAIVLGIKNFELSTRYPRTH
Homology
[Close]
BLAST of Clc09G01700.2 vs. NCBI nr
Match: KAG6575397.1 (hypothetical protein SDJN03_26036, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-10
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0 

Query: 64  RAQSAVDPNWFRSHLQPS-PSRGEIIHLKSNVIVDRLLFKATLHQNKEISSSCCGFRVRL 123
           + +SAVDPNWFRS+LQPS PSRGEIIHLK+NVIVD LLF   L+Q+KEI+     F    
Sbjct: 11  KTKSAVDPNWFRSYLQPSPPSRGEIIHLKTNVIVDPLLFNPALYQSKEIAFIALRFSCSS 70

Query: 124 LDYPLSLM 131
           +   L LM
Sbjct: 71  VGSSLYLM 78

The following BLAST results are available for this feature:
BLAST of Clc09G01700.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6575397.11.1e-1060.29hypothetical protein SDJN03_26036, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc09G01700.2 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G01700.2 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G01700.2 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Clc09G01700Clc09G01700gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc09G01700.2-exonClc09G01700.2-exon-ClcChr09:1418084..1418222exon
Clc09G01700.2-exonClc09G01700.2-exon-ClcChr09:1422047..1422489exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc09G01700.2-cdsClc09G01700.2-cds-ClcChr09:1418084..1418222CDS
Clc09G01700.2-cdsClc09G01700.2-cds-ClcChr09:1422047..1422489CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Clc09G01700.2Clc09G01700.2-proteinpolypeptide