Clc08G15820.2 (mRNA) Watermelon (cordophanus) v2

Overview
NameClc08G15820.2
TypemRNA
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionSAP30_Sin3_bdg domain-containing protein
LocationClcChr08: 26552600 .. 26555248 (+)
Sequence length792
RNA-Seq ExpressionClc08G15820.2
SyntenyClc08G15820.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTTCTCCCATTTGCAGAGCTGTGGGGACAGTAGTGAGGAAGAGCTCTCCGTACTTCCTCGCCATACCAAGGTCGTCGTTACTGGAAATAATCGTACCAAATCCGTCCTCGTTGGACTTCAAGGCGTCGTCAAGAAAGCCGTTGGCCTTGGCGGGTGGCATTGGCTGGTGATTTCTCTTTTTTTACTCGAGTTGGGTTCTTTTAGAAATGGGGTTTTTAAGAGACATTGAATTTCTTTGCATTCTCATTCTGGGTCATGACTCATTTCATGTTTTTTGATCAATGTCCCCCCAATTTCCCAATTTTTCAGTTCAATTTTTTGTAGTAGATCTTAGATCGTGTCCCAAGGAATTCTGGATTCGAGTGTTTTTGCTTTAGTCGTTGTCATTAACTGAGAATACAGGGTTTTCTTTAGTGTAATTTGGGTTTTATATGGAACTAGTTTGTGGGATGGCATCTTCAATTTCTATCTTTACCCTCCTTTATTGCATGTTCATCTAATCATTGGATCTCATGATTATATTAGTTTTCCCAAATCTAAAATGAATTTGATATCCATTTTTTTAATACTTCGGCCGTTTTCTGGGCAGGATTGTTTTATTTTATTTACTTTTGTTTGCCTTAATTCAATTTGTTAAATGAAATTATGATGGGTTTTTATCATGTGAATCGAAATAGAATTTTTCCTTTTACAATTTTCCGCTTGATTTAAATTGTAATTTCGGTGTTTTTGGATGTTCTTTTTTTTTCTTCTTGGATTGTTAGGAATTAGGGTTGTTGGTTTTGATTCATTTTTCTTGGATGTGACTTGGAATGGGGAAAATTTGCAGGTTCTAACAAATGGTATAGAGGTGAAACTACAGCGGAATGCACTTAGTGTGATCGAGGCTCCGACGGGCAATGAGGAAGACGACGATCTCGAATTCGAGAACTTGCAATGGAATGGGATTGATATGGGTGGGTCTTGTAGCTGATGTTCAATGTCTTAGCTCAATTATTCTTCTTTTTCTATTTCTATTAGCTGTCTTAGAATAGAATTGAGTTTATCCCATAATTGTTGTCTGTCCGGCTGTTTTTGGATTCCTGTCCTGATTTTTTTCTTGTTAACTTGTTACTAGTAAAAACGTATAGCTCAGCCTCTTTTTTAAAACCACAGCCATAGATTTATGCTTTTTCCAAATATCAGTAGAAACACATTTTAGTCTTTTTGTCTACAGTGATTTTTAGTGCACAAGAACCTTAACCCTTACAAATATCTTCACTGCAATTCTTGAAAATGAAAGCAAGTTTTAATTCTTTGATGACGAGCAGTGGTGGCAAGAGGTTGCTGTGGTGTAGCAGGCTCTTGGCTGATTGTTTGTTGGCTCTAGATAATGTTGATGGCAGCATAGGATCCTTTGTGAATTCACTTTTTACTTTTCCTCCTTCTGAATCGTTATTCTCCACATTTTCTTTATCCTTTTTTCTGACCCTTGTCACTCATTCATGATAACGCTTTCAACTATTATTGATTCTCAGCATCTGACGACGCCCAAAAATCCCACAAATCAAGGCATAAATTACACAAATCATCTGGGTCATCTCACAAGACTATGAGCAGATCCCTTTCCTGCGACTCACAGTCGAAGAGCTCGGTTTCTGCACTGCAAGGACCCACGGTATAGCCTTTTAACGTTCTGTATTGCAAAATGTATTTAGCATTGCAATTTAAATTAATACCCCTGTTGCATTATCGTCTCCTGTGTAGAAGGTTGACCTTAGTAAATTGGAGATGGCTGCATTGTGGAGATATTGGCGACACTTCAATCTGGTAAGTTACAAAAGCTGATGCGTAGTATGTTACGAGGTTTCTTTCTTTACCTAGAGATCGATGGATTTTTGCAGGTAGATGCCATCCCGAACCCGTCAAAAGAGCAATTAGTAGACCTAGTTCAGAGGCATTTCATGTCACAGGTAGTTGGAGTCTTTCCCCCTTCGTACTGCTATCAGAAACGAATGAAACTACATTAAAAACTGTTTTACTTCTATGTTACATATAATAATTGTTTTGTTTTGACTTATTGTCGAAACCTTACTTACGTCAGTGTTGTTGTTCGTTCCTTTCTTTTTCGGTTGCGAAGCAACTGGATGAGTTGCAGGTCATAATGGGGTTTGTGAAGGCTGCAAAGAGACTGAAGACAGTGTGCAAATGAGAGGAGTAGAGAAACTGGGGAATCCATTAAGTTGATTCCCATGCTAACAGATAATTCAGTTGAATCAAAAATGTTTCGATTCTCTCTGTAACATATGTATCGATCGATCGCAAATGGTTTTTGTCTTTCGGGTTGGGATTAGAAGGGGGTTATTAGTACGATTCTATCGTAGTAGTTAATAGAGTAATATCTTGTTTTAGTGACGATGTTACTTGTAAGTTGCAATGTAGATATGTGTAAACTGCAGATATTAGAGACCTCTTAGAGAAATGCCCCAAACGACTTGCTTTCTAAACCTTTGTTTAATATAATGCTGACTAACTTTTGGGGTTTCCATTGCCCAAAAATGTACATATTTTGTTGTTTCCAAATCCCTTCTCTTTTATCTTTGCTCTCTTCTCAGAGGTCTAAATCCCCACATCTAACGCAAAATTATGTTTTCATGACTTGA

mRNA sequence

ATGGCGAGCTGTGGGGACAGTAGTGAGGAAGAGCTCTCCGTACTTCCTCGCCATACCAAGGTCGTCGTTACTGGAAATAATCGTACCAAATCCGTCCTCGTTGGACTTCAAGGCGTCGTCAAGAAAGCCGTTGGCCTTGGCGGGTGGCATTGGCTGGTGATTTCTCTTTTTTTACTCGAGTTGGGAATTAGGGTTGTTGGTTTTGATTCATTTTTCTTGGATGTGACTTGGAATGGGGAAAATTTGCAGGTTCTAACAAATGGTATAGAGGTGAAACTACAGCGGAATGCACTTAGTGTGATCGAGGCTCCGACGGGCAATGAGGAAGACGACGATCTCGAATTCGAGAACTTGCAATGGAATGGGATTGATATGGCATCTGACGACGCCCAAAAATCCCACAAATCAAGGCATAAATTACACAAATCATCTGGGTCATCTCACAAGACTATGAGCAGATCCCTTTCCTGCGACTCACAGTCGAAGAGCTCGGTTTCTGCACTGCAAGGACCCACGAAGGTTGACCTTAGTAAATTGGAGATGGCTGCATTGTGGAGATATTGGCGACACTTCAATCTGGTAGATGCCATCCCGAACCCGTCAAAAGAGCAATTAGTAGACCTAGTTCAGAGGCATTTCATGTCACAGTGTTGTTGTTCGTTCCTTTCTTTTTCGGTTGCGAAGCAACTGGATGAGTTGCAGGTCATAATGGGGTTTGTGAAGGCTGCAAAGAGACTGAAGACAAGGTCTAAATCCCCACATCTAACGCAAAATTATGTTTTCATGACTTGA

Coding sequence (CDS)

ATGGCGAGCTGTGGGGACAGTAGTGAGGAAGAGCTCTCCGTACTTCCTCGCCATACCAAGGTCGTCGTTACTGGAAATAATCGTACCAAATCCGTCCTCGTTGGACTTCAAGGCGTCGTCAAGAAAGCCGTTGGCCTTGGCGGGTGGCATTGGCTGGTGATTTCTCTTTTTTTACTCGAGTTGGGAATTAGGGTTGTTGGTTTTGATTCATTTTTCTTGGATGTGACTTGGAATGGGGAAAATTTGCAGGTTCTAACAAATGGTATAGAGGTGAAACTACAGCGGAATGCACTTAGTGTGATCGAGGCTCCGACGGGCAATGAGGAAGACGACGATCTCGAATTCGAGAACTTGCAATGGAATGGGATTGATATGGCATCTGACGACGCCCAAAAATCCCACAAATCAAGGCATAAATTACACAAATCATCTGGGTCATCTCACAAGACTATGAGCAGATCCCTTTCCTGCGACTCACAGTCGAAGAGCTCGGTTTCTGCACTGCAAGGACCCACGAAGGTTGACCTTAGTAAATTGGAGATGGCTGCATTGTGGAGATATTGGCGACACTTCAATCTGGTAGATGCCATCCCGAACCCGTCAAAAGAGCAATTAGTAGACCTAGTTCAGAGGCATTTCATGTCACAGTGTTGTTGTTCGTTCCTTTCTTTTTCGGTTGCGAAGCAACTGGATGAGTTGCAGGTCATAATGGGGTTTGTGAAGGCTGCAAAGAGACTGAAGACAAGGTCTAAATCCCCACATCTAACGCAAAATTATGTTTTCATGACTTGA

Protein sequence

MASCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLELGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQWNGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLEMAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFVKAAKRLKTRSKSPHLTQNYVFMT
Homology
[Close]
BLAST of Clc08G15820.2 vs. NCBI nr
Match: XP_038883974.1 (uncharacterized protein LOC120074938 isoform X1 [Benincasa hispida])

HSP 1 Score: 368.2 bits (944), Expect = 5.8e-98
Identity = 202/251 (80.48%), Postives = 203/251 (80.88%), Query Frame = 0 

Query: 1   MASCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLE 60
           + SCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL        
Sbjct: 16  LQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------- 75

Query: 61  LGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 120
                                  VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW
Sbjct: 76  -----------------------VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 135

Query: 121 NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLE 180
           NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQG TKVDLSKLE
Sbjct: 136 NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGSTKVDLSKLE 195

Query: 181 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFV 240
           MAALWRYWRHFNLV AIPNPSKEQLVDLVQRHFMSQ            QLDELQVIMGFV
Sbjct: 196 MAALWRYWRHFNLVGAIPNPSKEQLVDLVQRHFMSQ------------QLDELQVIMGFV 223

Query: 241 KAAKRLKTRSK 252
           KAAKRLKT  K
Sbjct: 256 KAAKRLKTVCK 223

[Close]
BLAST of Clc08G15820.2 vs. NCBI nr
Match: XP_022144390.1 (uncharacterized protein LOC111014080 isoform X1 [Momordica charantia])

HSP 1 Score: 365.5 bits (937), Expect = 3.7e-97
Identity = 199/248 (80.24%), Postives = 201/248 (81.05%), Query Frame = 0 

Query: 1   MASCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLE 60
           + SCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL        
Sbjct: 16  LQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------- 75

Query: 61  LGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 120
                                  VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW
Sbjct: 76  -----------------------VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 135

Query: 121 NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLE 180
           NG+DMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSA QG TKVDL KLE
Sbjct: 136 NGLDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGSTKVDLGKLE 195

Query: 181 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFV 240
           MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ            QLDELQVIMGFV
Sbjct: 196 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ------------QLDELQVIMGFV 220

Query: 241 KAAKRLKT 249
           KAAKRLKT
Sbjct: 256 KAAKRLKT 220

[Close]
BLAST of Clc08G15820.2 vs. NCBI nr
Match: XP_004152712.1 (uncharacterized protein LOC101220556 isoform X1 [Cucumis sativus] >XP_008444684.1 PREDICTED: uncharacterized protein LOC103487947 isoform X1 [Cucumis melo] >KAA0065256.1 Histone deacetylase complex subunit SAP30/SAP30-like protein [Cucumis melo var. makuwa] >KGN62574.1 hypothetical protein Csa_022223 [Cucumis sativus])

HSP 1 Score: 365.2 bits (936), Expect = 4.9e-97
Identity = 201/251 (80.08%), Postives = 202/251 (80.48%), Query Frame = 0 

Query: 1   MASCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLE 60
           + SCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL        
Sbjct: 16  LQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------- 75

Query: 61  LGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 120
                                  VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW
Sbjct: 76  -----------------------VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 135

Query: 121 NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLE 180
           N IDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSA QG TKVDLSKLE
Sbjct: 136 NRIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGSTKVDLSKLE 195

Query: 181 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFV 240
           MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ            QLDELQVIMGFV
Sbjct: 196 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ------------QLDELQVIMGFV 223

Query: 241 KAAKRLKTRSK 252
           KAAKRLKT  K
Sbjct: 256 KAAKRLKTVCK 223

[Close]
BLAST of Clc08G15820.2 vs. NCBI nr
Match: XP_038883975.1 (uncharacterized protein LOC120074938 isoform X2 [Benincasa hispida])

HSP 1 Score: 361.7 bits (927), Expect = 5.4e-96
Identity = 201/251 (80.08%), Postives = 202/251 (80.48%), Query Frame = 0 

Query: 1   MASCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLE 60
           + SCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL        
Sbjct: 16  LQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------- 75

Query: 61  LGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 120
                                  VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW
Sbjct: 76  -----------------------VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 135

Query: 121 NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLE 180
           NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQG T VDLSKLE
Sbjct: 136 NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGST-VDLSKLE 195

Query: 181 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFV 240
           MAALWRYWRHFNLV AIPNPSKEQLVDLVQRHFMSQ            QLDELQVIMGFV
Sbjct: 196 MAALWRYWRHFNLVGAIPNPSKEQLVDLVQRHFMSQ------------QLDELQVIMGFV 222

Query: 241 KAAKRLKTRSK 252
           KAAKRLKT  K
Sbjct: 256 KAAKRLKTVCK 222

[Close]
BLAST of Clc08G15820.2 vs. NCBI nr
Match: XP_022144391.1 (uncharacterized protein LOC111014080 isoform X2 [Momordica charantia])

HSP 1 Score: 359.0 bits (920), Expect = 3.5e-95
Identity = 198/248 (79.84%), Postives = 200/248 (80.65%), Query Frame = 0 

Query: 1   MASCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLE 60
           + SCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL        
Sbjct: 16  LQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------- 75

Query: 61  LGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 120
                                  VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW
Sbjct: 76  -----------------------VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 135

Query: 121 NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLE 180
           NG+DMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSA QG T VDL KLE
Sbjct: 136 NGLDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGST-VDLGKLE 195

Query: 181 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFV 240
           MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ            QLDELQVIMGFV
Sbjct: 196 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ------------QLDELQVIMGFV 219

Query: 241 KAAKRLKT 249
           KAAKRLKT
Sbjct: 256 KAAKRLKT 219

[Close]
BLAST of Clc08G15820.2 vs. ExPASy TrEMBL
Match: A0A6J1CRH4 (uncharacterized protein LOC111014080 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014080 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.8e-97
Identity = 199/248 (80.24%), Postives = 201/248 (81.05%), Query Frame = 0 

Query: 1   MASCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLE 60
           + SCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL        
Sbjct: 16  LQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------- 75

Query: 61  LGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 120
                                  VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW
Sbjct: 76  -----------------------VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 135

Query: 121 NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLE 180
           NG+DMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSA QG TKVDL KLE
Sbjct: 136 NGLDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGSTKVDLGKLE 195

Query: 181 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFV 240
           MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ            QLDELQVIMGFV
Sbjct: 196 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ------------QLDELQVIMGFV 220

Query: 241 KAAKRLKT 249
           KAAKRLKT
Sbjct: 256 KAAKRLKT 220

[Close]
BLAST of Clc08G15820.2 vs. ExPASy TrEMBL
Match: A0A5A7VFZ9 (Histone deacetylase complex subunit SAP30/SAP30-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005970 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 2.4e-97
Identity = 201/251 (80.08%), Postives = 202/251 (80.48%), Query Frame = 0 

Query: 1   MASCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLE 60
           + SCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL        
Sbjct: 16  LQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------- 75

Query: 61  LGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 120
                                  VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW
Sbjct: 76  -----------------------VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 135

Query: 121 NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLE 180
           N IDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSA QG TKVDLSKLE
Sbjct: 136 NRIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGSTKVDLSKLE 195

Query: 181 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFV 240
           MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ            QLDELQVIMGFV
Sbjct: 196 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ------------QLDELQVIMGFV 223

Query: 241 KAAKRLKTRSK 252
           KAAKRLKT  K
Sbjct: 256 KAAKRLKTVCK 223

[Close]
BLAST of Clc08G15820.2 vs. ExPASy TrEMBL
Match: A0A0A0LNK2 (SAP30_Sin3_bdg domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361400 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 2.4e-97
Identity = 201/251 (80.08%), Postives = 202/251 (80.48%), Query Frame = 0 

Query: 1   MASCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLE 60
           + SCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL        
Sbjct: 16  LQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------- 75

Query: 61  LGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 120
                                  VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW
Sbjct: 76  -----------------------VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 135

Query: 121 NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLE 180
           N IDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSA QG TKVDLSKLE
Sbjct: 136 NRIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGSTKVDLSKLE 195

Query: 181 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFV 240
           MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ            QLDELQVIMGFV
Sbjct: 196 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ------------QLDELQVIMGFV 223

Query: 241 KAAKRLKTRSK 252
           KAAKRLKT  K
Sbjct: 256 KAAKRLKTVCK 223

[Close]
BLAST of Clc08G15820.2 vs. ExPASy TrEMBL
Match: A0A1S3BAV7 (uncharacterized protein LOC103487947 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487947 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 2.4e-97
Identity = 201/251 (80.08%), Postives = 202/251 (80.48%), Query Frame = 0 

Query: 1   MASCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLE 60
           + SCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL        
Sbjct: 16  LQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------- 75

Query: 61  LGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 120
                                  VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW
Sbjct: 76  -----------------------VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 135

Query: 121 NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLE 180
           N IDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSA QG TKVDLSKLE
Sbjct: 136 NRIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGSTKVDLSKLE 195

Query: 181 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFV 240
           MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ            QLDELQVIMGFV
Sbjct: 196 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ------------QLDELQVIMGFV 223

Query: 241 KAAKRLKTRSK 252
           KAAKRLKT  K
Sbjct: 256 KAAKRLKTVCK 223

[Close]
BLAST of Clc08G15820.2 vs. ExPASy TrEMBL
Match: A0A6J1CT98 (uncharacterized protein LOC111014080 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014080 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.7e-95
Identity = 198/248 (79.84%), Postives = 200/248 (80.65%), Query Frame = 0 

Query: 1   MASCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLE 60
           + SCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL        
Sbjct: 16  LQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------- 75

Query: 61  LGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 120
                                  VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW
Sbjct: 76  -----------------------VLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQW 135

Query: 121 NGIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLE 180
           NG+DMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSA QG T VDL KLE
Sbjct: 136 NGLDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSAPQGST-VDLGKLE 195

Query: 181 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFV 240
           MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ            QLDELQVIMGFV
Sbjct: 196 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQ------------QLDELQVIMGFV 219

Query: 241 KAAKRLKT 249
           KAAKRLKT
Sbjct: 256 KAAKRLKT 219

[Close]
BLAST of Clc08G15820.2 vs. TAIR 10
Match: AT1G19330.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 283.9 bits (725), Expect = 1.3e-76
Identity = 163/245 (66.53%), Postives = 175/245 (71.43%), Query Frame = 0 

Query: 7   SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLELGIRVV 66
           SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL              
Sbjct: 26  SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------------- 85

Query: 67  GFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQWNGIDMA 126
                            VLTNGIEVKLQRNALSV+E PTGNEEDDDL+FEN Q NG DM 
Sbjct: 86  -----------------VLTNGIEVKLQRNALSVLEPPTGNEEDDDLDFENTQRNGSDMT 145

Query: 127 SDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLEMAALWR 186
           S+D  K HKS+ +  +SS SSHKTMSRSLS DSQSKSS        KVDLSKLEM AL  
Sbjct: 146 SEDTLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMKVDLSKLEMPALLN 205

Query: 187 YWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFVKAAKRL 246
           YWRHFNLVDAIPNPSKEQL+D+VQRHFMSQ            Q+DELQVI+GFV+AAKR+
Sbjct: 206 YWRHFNLVDAIPNPSKEQLIDIVQRHFMSQ------------QMDELQVIVGFVQAAKRM 227

Query: 247 KTRSK 252
           K   K
Sbjct: 266 KKACK 227

[Close]
BLAST of Clc08G15820.2 vs. TAIR 10
Match: AT1G19330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 279.3 bits (713), Expect = 3.3e-75
Identity = 164/250 (65.60%), Postives = 176/250 (70.40%), Query Frame = 0 

Query: 7   SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLELGIRVV 66
           SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL              
Sbjct: 26  SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------------- 85

Query: 67  GFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQWNGIDM- 126
                            VLTNGIEVKLQRNALSV+E PTGNEEDDDL+FEN Q NG DM 
Sbjct: 86  -----------------VLTNGIEVKLQRNALSVLEPPTGNEEDDDLDFENTQRNGSDMI 145

Query: 127 ----ASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDLSKLEM 186
               AS+D  K HKS+ +  +SS SSHKTMSRSLS DSQSKSS        KVDLSKLEM
Sbjct: 146 VSFPASEDTLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMKVDLSKLEM 205

Query: 187 AALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFVK 246
            AL  YWRHFNLVDAIPNPSKEQL+D+VQRHFMSQ            Q+DELQVI+GFV+
Sbjct: 206 PALLNYWRHFNLVDAIPNPSKEQLIDIVQRHFMSQ------------QMDELQVIVGFVQ 232

Query: 247 AAKRLKTRSK 252
           AAKR+K   K
Sbjct: 266 AAKRMKKACK 232

[Close]
BLAST of Clc08G15820.2 vs. TAIR 10
Match: AT1G19330.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1). )

HSP 1 Score: 278.1 bits (710), Expect = 7.3e-75
Identity = 164/251 (65.34%), Postives = 178/251 (70.92%), Query Frame = 0 

Query: 7   SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFLLELGIRVV 66
           SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL              
Sbjct: 26  SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL-------------- 85

Query: 67  GFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENLQWNGIDM- 126
                            VLTNGIEVKLQRNALSV+E PTGNEEDDDL+FEN Q NG DM 
Sbjct: 86  -----------------VLTNGIEVKLQRNALSVLEPPTGNEEDDDLDFENTQRNGSDMI 145

Query: 127 ----ASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSS-VSALQGPTKVDLSKLE 186
               AS+D  K HKS+ +  +SS SSHKTMSRSLS DSQSKSS  +  +   KVDLSKLE
Sbjct: 146 VSFPASEDTLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMQKVDLSKLE 205

Query: 187 MAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVIMGFV 246
           M AL  YWRHFNLVDAIPNPSKEQL+D+VQRHFMSQ            Q+DELQVI+GFV
Sbjct: 206 MPALLNYWRHFNLVDAIPNPSKEQLIDIVQRHFMSQ------------QMDELQVIVGFV 233

Query: 247 KAAKRLKTRSK 252
           +AAKR+K   K
Sbjct: 266 QAAKRMKKACK 233

[Close]
BLAST of Clc08G15820.2 vs. TAIR 10
Match: AT1G75060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 253.4 bits (646), Expect = 1.9e-67
Identity = 150/251 (59.76%), Postives = 174/251 (69.32%), Query Frame = 0 

Query: 1   MASC-GD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFL 60
           + SC GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL      
Sbjct: 22  LQSCFGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL------ 81

Query: 61  LELGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFE-N 120
                                    VLTNGIEVKLQRNALSV+E PTGNEED+DLE + +
Sbjct: 82  -------------------------VLTNGIEVKLQRNALSVLEHPTGNEEDNDLEVDHS 141

Query: 121 LQWN-GIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDL 180
            QWN   DM ++D  K HKS+ + H+SS  S K + R +SCDS SK S    +   KVDL
Sbjct: 142 TQWNHPSDMTTEDTLKPHKSKKRGHRSSRLSQKALYREVSCDSHSKISSITPRLNMKVDL 201

Query: 181 SKLEMAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVI 240
           +KL+MAAL RYWRHFNLVDA+PNP+KEQL+D++QRHFMSQ            Q+DELQVI
Sbjct: 202 TKLDMAALLRYWRHFNLVDALPNPTKEQLIDIIQRHFMSQ------------QMDELQVI 229

Query: 241 MGFVKAAKRLK 248
           +GFV+AA  +K
Sbjct: 262 VGFVQAATGMK 229

[Close]
BLAST of Clc08G15820.2 vs. TAIR 10
Match: AT1G75060.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-66
Identity = 150/251 (59.76%), Postives = 173/251 (68.92%), Query Frame = 0 

Query: 1   MASC-GD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVISLFL 60
           + SC GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL      
Sbjct: 22  LQSCFGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWL------ 81

Query: 61  LELGIRVVGFDSFFLDVTWNGENLQVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFE-N 120
                                    VLTNGIEVKLQRNALSV+E PTGNEED+DLE + +
Sbjct: 82  -------------------------VLTNGIEVKLQRNALSVLEHPTGNEEDNDLEVDHS 141

Query: 121 LQWN-GIDMASDDAQKSHKSRHKLHKSSGSSHKTMSRSLSCDSQSKSSVSALQGPTKVDL 180
            QWN   DM ++D  K HKS+ + H+SS  S K + R +SCDS SK S S       VDL
Sbjct: 142 TQWNHPSDMTTEDTLKPHKSKKRGHRSSRLSQKALYREVSCDSHSKIS-SITPRLNMVDL 201

Query: 181 SKLEMAALWRYWRHFNLVDAIPNPSKEQLVDLVQRHFMSQCCCSFLSFSVAKQLDELQVI 240
           +KL+MAAL RYWRHFNLVDA+PNP+KEQL+D++QRHFMSQ            Q+DELQVI
Sbjct: 202 TKLDMAALLRYWRHFNLVDALPNPTKEQLIDIIQRHFMSQ------------QMDELQVI 228

Query: 241 MGFVKAAKRLK 248
           +GFV+AA  +K
Sbjct: 262 VGFVQAATGMK 228

The following BLAST results are available for this feature:
BLAST of Clc08G15820.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038883974.15.8e-9880.48uncharacterized protein LOC120074938 isoform X1 [Benincasa hispida][more]
XP_022144390.13.7e-9780.24uncharacterized protein LOC111014080 isoform X1 [Momordica charantia][more]
XP_004152712.14.9e-9780.08uncharacterized protein LOC101220556 isoform X1 [Cucumis sativus] >XP_008444684.... [more]
XP_038883975.15.4e-9680.08uncharacterized protein LOC120074938 isoform X2 [Benincasa hispida][more]
XP_022144391.13.5e-9579.84uncharacterized protein LOC111014080 isoform X2 [Momordica charantia][more]
BLAST of Clc08G15820.2 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G15820.2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CRH41.8e-9780.24uncharacterized protein LOC111014080 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A5A7VFZ92.4e-9780.08Histone deacetylase complex subunit SAP30/SAP30-like protein OS=Cucumis melo var... [more]
A0A0A0LNK22.4e-9780.08SAP30_Sin3_bdg domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361... [more]
A0A1S3BAV72.4e-9780.08uncharacterized protein LOC103487947 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1CT981.7e-9579.84uncharacterized protein LOC111014080 isoform X2 OS=Momordica charantia OX=3673 G... [more]
BLAST of Clc08G15820.2 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G19330.21.3e-7666.53unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G19330.13.3e-7565.60unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G19330.37.3e-7565.34unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G75060.11.9e-6759.76unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G75060.22.1e-6659.76unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025718Histone deacetylase complex subunit SAP30, Sin3 binding domainPFAMPF13867SAP30_Sin3_bdgcoord: 179..216
e-value: 1.3E-13
score: 51.0
IPR038291SAP30, C-terminal domain superfamilyGENE3D6.10.160.20coord: 154..254
e-value: 7.3E-24
score: 85.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..165
NoneNo IPR availablePANTHERPTHR13286:SF11SUBFAMILY NOT NAMEDcoord: 3..55
coord: 78..250
IPR024145Histone deacetylase complex subunit SAP30/SAP30-likePANTHERPTHR13286SAP30coord: 3..55
coord: 78..250

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Clc08G15820Clc08G15820gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc08G15820.2-exonClc08G15820.2-exon-ClcChr08:26552600..26552605exon
Clc08G15820.2-exonClc08G15820.2-exon-ClcChr08:26552623..26552800exon
Clc08G15820.2-exonClc08G15820.2-exon-ClcChr08:26553371..26553562exon
Clc08G15820.2-exonClc08G15820.2-exon-ClcChr08:26554124..26554263exon
Clc08G15820.2-exonClc08G15820.2-exon-ClcChr08:26554353..26554415exon
Clc08G15820.2-exonClc08G15820.2-exon-ClcChr08:26554490..26554558exon
Clc08G15820.2-exonClc08G15820.2-exon-ClcChr08:26554690..26554785exon
Clc08G15820.2-exonClc08G15820.2-exon-ClcChr08:26555201..26555248exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc08G15820.2-cdsClc08G15820.2-cds-ClcChr08:26552600..26552605CDS
Clc08G15820.2-cdsClc08G15820.2-cds-ClcChr08:26552623..26552800CDS
Clc08G15820.2-cdsClc08G15820.2-cds-ClcChr08:26553371..26553562CDS
Clc08G15820.2-cdsClc08G15820.2-cds-ClcChr08:26554124..26554263CDS
Clc08G15820.2-cdsClc08G15820.2-cds-ClcChr08:26554353..26554415CDS
Clc08G15820.2-cdsClc08G15820.2-cds-ClcChr08:26554490..26554558CDS
Clc08G15820.2-cdsClc08G15820.2-cds-ClcChr08:26554690..26554785CDS
Clc08G15820.2-cdsClc08G15820.2-cds-ClcChr08:26555201..26555248CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Clc08G15820.2Clc08G15820.2-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0000118 histone deacetylase complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0003712 transcription coregulator activity