Clc07G16350.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc07G16350.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr07: 30830345 .. 30831128 (+)
Sequence length	784
RNA-Seq Expression	Clc07G16350.1
Synteny	Clc07G16350.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAGTAATGTAGCCTAACTATTTTTCTATCCCAATCCCTCTACCAAGTAAAAGTAAACAAATCATACACCCAATAAAGATTCTTCCACACCGAACTCTTCCCTCTCTTCTAATTATTGTTCACATGGGAGTTTCCTCAAACACCATGGCTACAACATTTCTGATACCAACCATGGGCATTCTGATTCTGATTCTGCTGTTCTACCCAGCGGGCTGCAACAAGACAGCATCGGAGTGGTGCGACGGGTCCGAGAATTGCCTCGTTGGCGACGAGAGCTCGGATTCGGAGTTTCTGATGGAGACAGAGAGCAGCCGGAGGATGCTGCTGGACTTTCAGAAATTACAAACTCCGAACACTAACAACGCTAACAAACAATCGGTTCCGGAATGTGGGCGGCCGCCACGGTATGACAGCTGCACCGGCGACAAAAGAAGTATATCCAACCCTGAAAATTGCGATGCCCGAAATCGCGTCAATCCATGTCAGTAAAAATGTTGTTTAAATATGTATTCTGGAATTCGATTGCCTTCAATGTTGAAGGAACATCCACTTATTTAACATTGGAATAATGAATTGCAATGTCTGTTTTAATCACAATCAGCTGTATTGTAAATCTTCGTATAGGTTTTTAATTACTTCCATCACTCATGCTACAATTCATAATCATTAACACAATTTACAAAATCTACTTTTACTTGATATGGTAAATGAAAAATAGCACCTATCTTTGTAGGAGCTATCCAGTAAAAAACTGCCATGTGGCAGTTTTTGGATTTTTT

mRNA sequence

AAAAAAAAGTAATGTAGCCTAACTATTTTTCTATCCCAATCCCTCTACCAAGTAAAAGTAAACAAATCATACACCCAATAAAGATTCTTCCACACCGAACTCTTCCCTCTCTTCTAATTATTGTTCACATGGGAGTTTCCTCAAACACCATGGCTACAACATTTCTGATACCAACCATGGGCATTCTGATTCTGATTCTGCTGTTCTACCCAGCGGGCTGCAACAAGACAGCATCGGAGTGGTGCGACGGGTCCGAGAATTGCCTCGTTGGCGACGAGAGCTCGGATTCGGAGTTTCTGATGGAGACAGAGAGCAGCCGGAGGATGCTGCTGGACTTTCAGAAATTACAAACTCCGAACACTAACAACGCTAACAAACAATCGGTTCCGGAATGTGGGCGGCCGCCACGGTATGACAGCTGCACCGGCGACAAAAGAAGTATATCCAACCCTGAAAATTGCGATGCCCGAAATCGCGTCAATCCATGTCAGTAAAAATGTTGTTTAAATATGTATTCTGGAATTCGATTGCCTTCAATGTTGAAGGAACATCCACTTATTTAACATTGGAATAATGAATTGCAATGTCTGTTTTAATCACAATCAGCTGTATTGTAAATCTTCGTATAGGTTTTTAATTACTTCCATCACTCATGCTACAATTCATAATCATTAACACAATTTACAAAATCTACTTTTACTTGATATGGTAAATGAAAAATAGCACCTATCTTTGTAGGAGCTATCCAGTAAAAAACTGCCATGTGGCAGTTTTTGGATTTTTT

Coding sequence (CDS)

ATGGGAGTTTCCTCAAACACCATGGCTACAACATTTCTGATACCAACCATGGGCATTCTGATTCTGATTCTGCTGTTCTACCCAGCGGGCTGCAACAAGACAGCATCGGAGTGGTGCGACGGGTCCGAGAATTGCCTCGTTGGCGACGAGAGCTCGGATTCGGAGTTTCTGATGGAGACAGAGAGCAGCCGGAGGATGCTGCTGGACTTTCAGAAATTACAAACTCCGAACACTAACAACGCTAACAAACAATCGGTTCCGGAATGTGGGCGGCCGCCACGGTATGACAGCTGCACCGGCGACAAAAGAAGTATATCCAACCCTGAAAATTGCGATGCCCGAAATCGCGTCAATCCATGTCAGTAA

Protein sequence

MGVSSNTMATTFLIPTMGILILILLFYPAGCNKTASEWCDGSENCLVGDESSDSEFLMETESSRRMLLDFQKLQTPNTNNANKQSVPECGRPPRYDSCTGDKRSISNPENCDARNRVNPCQ

Homology

[Close]

BLAST of Clc07G16350.1 vs. NCBI nr
Match: KAA0042447.1 (hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK03509.1 hypothetical protein E5676_scaffold121G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 184.1 bits (466), Expect = 7.1e-43
Identity = 92/117 (78.63%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 8   MATTFLIPTMGILILILLFYPAGC----NKTASEWCDGSENCLVGDESSDSEFLMETESS 67
           MATTF IPTM I+ILILLF   GC    N+TA EWC GSENCL+GDESSDSEFLMET++S
Sbjct: 1   MATTFSIPTMAIIILILLFNTIGCNTTVNETAPEWCYGSENCLIGDESSDSEFLMETDTS 60

Query: 68  RRMLLDFQKLQTPNTNNANKQSVPECGRPPRYDSCTGDKRSISNPENCDARNRVNPC 121
            RMLLDFQ LQTP+TNN N+QSVPECGRPPRYDSC G+KRSISNPENCD RNR NPC
Sbjct: 61  -RMLLDFQNLQTPSTNNPNRQSVPECGRPPRYDSCIGEKRSISNPENCDVRNRENPC 116

[Close]

BLAST of Clc07G16350.1 vs. NCBI nr
Match: KAG7011063.1 (hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.4 bits (433), Expect = 4.8e-39
Identity = 88/126 (69.84%), Postives = 97/126 (76.98%), Query Frame = 0


Query: 1   MGVSSNTMATTFLIPTMGILILILLFYP-----AGCNKTASEWCDGS-ENCLVGDESSDS 60
           MG++SNTMA T L P+M IL +ILL  P     A  NKTA+EWCDG  ENCL+GD +SDS
Sbjct: 1   MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDS 60

Query: 61  EFLMETESSRRMLLDFQKLQTPNTNNANKQSVPECGRPPRYDSCTGDKRSISNPENCDAR 120
           EFLMETE+S RMLLDF   QTPNTNN +KQS PEC RPPRYDSC G K SI NPENCD R
Sbjct: 61  EFLMETETS-RMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQKTSIPNPENCDTR 120

[Close]

BLAST of Clc07G16350.1 vs. NCBI nr
Match: KAE8649335.1 (hypothetical protein Csa_014907 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-38
Identity = 87/116 (75.00%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 8   MATTFLIPTMGILILILLFYPAGC----NKTASEWCDGSENCLVGDESSDSEFLMETESS 67
           MATTF IPTM ILIL LLF P  C    N+T SEWC GSENCLVGDES DSEFLMETE+S
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60

Query: 68  RRMLLDFQKLQTPNTNNANKQSVPECGRPPRYDSCTGDKRSISNPENCDARNRVNP 120
            RMLLDFQ LQTP T + N+QSV ECGRPPRYDSCTG++R I NPENCD RNR NP
Sbjct: 61  -RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANP 115

[Close]

BLAST of Clc07G16350.1 vs. NCBI nr
Match: KAG6607065.1 (hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.9 bits (424), Expect = 5.3e-38
Identity = 86/126 (68.25%), Postives = 95/126 (75.40%), Query Frame = 0


Query: 1   MGVSSNTMATTFLIPTMGILILILLFYP-----AGCNKTASEWCDGS-ENCLVGDESSDS 60
           MG++SNTMA T L P+M IL +ILL  P     A  NKTA+EWCDG  ENCL+GD +SDS
Sbjct: 1   MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDS 60

Query: 61  EFLMETESSRRMLLDFQKLQTPNTNNANKQSVPECGRPPRYDSCTGDKRSISNPENCDAR 120
           EFLMETE+S RMLLDF   QTPNTNN +KQS PEC RPPRYD C G K  I NPENCD R
Sbjct: 61  EFLMETETS-RMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDGCLGQKNIIPNPENCDTR 120

[Close]

BLAST of Clc07G16350.1 vs. NCBI nr
Match: KGN53798.1 (hypothetical protein Csa_014747 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-29
Identity = 74/122 (60.66%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 5   SNTMATTFLIPTMGILILILLFYP----AGCNKTASEWCD--GSENCLVGDESSDSEFLM 64
           SN+MA T  +P+M  LI ILL  P    AG N T S+WCD  G ENCLVGD +S SEFLM
Sbjct: 6   SNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLM 65

Query: 65  ETESSRRMLLDFQKLQTPNTNNANKQSVPECGRPPRYDSCTGDKRSISNPENCDARNRVN 121
            TESS  ++  F   QTP  N+ANK+SVP+C RPPRYDSC G KRSI NPE C   NRVN
Sbjct: 66  LTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVN 125

[Close]

BLAST of Clc07G16350.1 vs. ExPASy TrEMBL
Match: A0A5D3BZL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G001310 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.4e-43
Identity = 92/117 (78.63%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 8   MATTFLIPTMGILILILLFYPAGC----NKTASEWCDGSENCLVGDESSDSEFLMETESS 67
           MATTF IPTM I+ILILLF   GC    N+TA EWC GSENCL+GDESSDSEFLMET++S
Sbjct: 1   MATTFSIPTMAIIILILLFNTIGCNTTVNETAPEWCYGSENCLIGDESSDSEFLMETDTS 60

Query: 68  RRMLLDFQKLQTPNTNNANKQSVPECGRPPRYDSCTGDKRSISNPENCDARNRVNPC 121
            RMLLDFQ LQTP+TNN N+QSVPECGRPPRYDSC G+KRSISNPENCD RNR NPC
Sbjct: 61  -RMLLDFQNLQTPSTNNPNRQSVPECGRPPRYDSCIGEKRSISNPENCDVRNRENPC 116

[Close]

BLAST of Clc07G16350.1 vs. ExPASy TrEMBL
Match: A0A0A0KVZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.4e-39
Identity = 88/117 (75.21%), Postives = 94/117 (80.34%), Query Frame = 0


Query: 8   MATTFLIPTMGILILILLFYPAGC----NKTASEWCDGSENCLVGDESSDSEFLMETESS 67
           MATTF IPTM ILIL LLF P  C    N+T SEWC GSENCLVGDES DSEFLMETE+S
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60

Query: 68  RRMLLDFQKLQTPNTNNANKQSVPECGRPPRYDSCTGDKRSISNPENCDARNRVNPC 121
            RMLLDFQ LQTP T + N+QSV ECGRPPRYDSCTG++R I NPENCD RNR NPC
Sbjct: 61  -RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of Clc07G16350.1 vs. ExPASy TrEMBL
Match: A0A0A0KW62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 7.4e-30
Identity = 74/122 (60.66%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 5   SNTMATTFLIPTMGILILILLFYP----AGCNKTASEWCD--GSENCLVGDESSDSEFLM 64
           SN+MA T  +P+M  LI ILL  P    AG N T S+WCD  G ENCLVGD +S SEFLM
Sbjct: 6   SNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLM 65

Query: 65  ETESSRRMLLDFQKLQTPNTNNANKQSVPECGRPPRYDSCTGDKRSISNPENCDARNRVN 121
            TESS  ++  F   QTP  N+ANK+SVP+C RPPRYDSC G KRSI NPE C   NRVN
Sbjct: 66  LTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVN 125

[Close]

BLAST of Clc07G16350.1 vs. ExPASy TrEMBL
Match: A0A5D3BS53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002320 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-13
Identity = 49/118 (41.53%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 9   ATTFLIPTMGILILILLFYPAGCNKTA------SEWCDGSENCLVGDESSDSEFLMETES 68
           A+  +IP   + +++LL  P+ C          S      E  +VG+E  D EF+ME+  
Sbjct: 3   ASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMESHI 62

Query: 69  SRRMLLDFQKLQTPNTNNANKQSVPECGRPPRYDSCTGDKRSISNPENCDARNRVNPC 121
           S R+L   Q  QT +T +ANK S   CGRPPRYDSC G KR+   P NC   NR NPC
Sbjct: 63  S-RILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 119

[Close]

BLAST of Clc07G16350.1 vs. ExPASy TrEMBL
Match: A0A6J1CNY1 (uncharacterized protein LOC111013208 OS=Momordica charantia OX=3673 GN=LOC111013208 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.7e-13
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 9   ATTFLIPTMGILILILLFYPAGC-NKTASEWCDGSENCLVGDESSDSEFLMETESSRRML 68
           A   +IPT  + I+ LL  P GC    +S     +   LVGD+  DSEFLME+  SR + 
Sbjct: 5   AAALMIPT-AVAIVFLLLSPTGCIALISSNDTSNTIKHLVGDKDLDSEFLMESHLSRILA 64

Query: 69  LDFQKLQTPNTNNANKQSVPECGRPPRYDSCTGDKRSISNPENCDARNRVNP 120
            + Q  QT +TNNAN+ +V +C R PRYDSC G K  +  PENC   NRV P
Sbjct: 65  SNSQNFQTSSTNNANRAAV-DCSRQPRYDSCLGQKNGVPPPENCATYNRVCP 114

The following BLAST results are available for this feature:

BLAST of Clc07G16350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042447.1	7.1e-43	78.63	hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK0350...	[more]
KAG7011063.1	4.8e-39	69.84	hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8649335.1	3.1e-38	75.00	hypothetical protein Csa_014907 [Cucumis sativus]	[more]
KAG6607065.1	5.3e-38	68.25	hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN53798.1	1.5e-29	60.66	hypothetical protein Csa_014747 [Cucumis sativus]	[more]

BLAST of Clc07G16350.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc07G16350.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZL1	3.4e-43	78.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KVZ2	1.4e-39	75.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1	[more]
A0A0A0KW62	7.4e-30	60.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1	[more]
A0A5D3BS53	2.8e-13	41.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CNY1	3.7e-13	45.54	uncharacterized protein LOC111013208 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Clc07G16350.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc07G16350	Clc07G16350	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc07G16350.1-exon	Clc07G16350.1-exon-ClcChr07:30830345..30831128	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc07G16350.1-five_prime_utr	Clc07G16350.1-five_prime_utr-ClcChr07:30830345..30830472	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc07G16350.1-cds	Clc07G16350.1-cds-ClcChr07:30830473..30830838	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc07G16350.1-three_prime_utr	Clc07G16350.1-three_prime_utr-ClcChr07:30830839..30831128	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc07G16350.1	Clc07G16350.1-protein	polypeptide