Clc07G10245.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc07G10245.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	HMG1/2-like protein
Location	ClcChr07: 24808666 .. 24814251 (-)
Sequence length	966
RNA-Seq Expression	Clc07G10245.1
Synteny	Clc07G10245.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACGTCTACTTAGACAACAAGGGTGTACTACAAATAACAAACCTCAAGTTTTTCATGGCCAATTCCTCACACCTTCCCCAATTGTTCTAAAAGAAACCTCCTACACCTGACTGAACTGGAACGTCCAGCTCTCTTCCACACCCTACAATAAAAAATCTCTTATCATTTTTTCCACCTTAGAACTACTAAAAGGTGATTTTTTTTTTTTTTTCTTTGGATAACAACTTTTATTGAGAAAGAAAGAAGGAAAAAAAATACAAGGGCATACGAAAAGCCAAGCCCACAGAAGGCAATCTAACTAGAGAAAGGGGCTTTAGCTGGGGGGTACCTACAGAATAATTGAAAAAGATCTTTGAAATCGACTAAAAGAGAGAGGAGAAGTACGACGAGCTCCCACTCAAGCACAGACTAGATGAGTATCAACCTAACACCTTCAAAGAAGAATGCACTTTTCATGTGCAAAGCCGTTTATAAACTTCTTTGTAATAGGATTTACAAGTAGAGACAATTGGAATAATGACTAAGAGAAAGACCAAGGCAATTAGTGAAAATGAGACCAACTTAAAACTTCATCTATCCAATTTAACGAAATCACAATTAATACCGACCAATGAAGCCTTTCTCCAATTGATCTTGAATACCATACGACTCTAAAAAGCGGCAAATTTTTCTCAACAATTAATGAATTCCTACTCATGCAAGAAAAAATTGTCCTCAACAAACTAAAAAACAAAAAGGTGAATTCATGGTATGGATGATATGGAAATTTAAGATCCCAAATAAAGTTAAGTTTTTTCTTTGGACTCTTTGGTATAGAAGTCTCGACACGGCGAATAGTTTAATAGAGTCCAAAGAAAATCCTCTAGGTGGATGTTTTCTCCCTCGATTCGATCTGCCGTCATTGTTAAATAGTAGGAGTTTTTCACCCATTGACCTTCTGCTTTGAGGGGGTGGATGAGGCTGCTCAAGGAATTTGATTTCTCAACGTGCCTTTCAAACTGAATTGAGGATTGGTTGTTGGAGTGTTTGGATAGACCTGGAGTAAGGCTGAGAAGTAGAGCTAGAGCCAAAGTCACATGGAGCTGCAACATTAGTACTTTTTTGGCTCCTTTGGAAGGAAAGGAATTAGAGGATCCTTTAGCATAGCAATACTACTCATGTCTTTTTCTTGGAATGATGTATACAGCATCTTGGTGGTGTTCCAACCACAAGAAATTTTACCCTCCTTGTGATTTCACACAATTGGAAGGTTGCACGTAGTCCTTCGTGGTTTGGACGACACAATTGGAAGGCCGTACGGAGAGGGTTTTCTCCTTCTCCTATGCTTGAGTTGCCTGCTCTTTTTTGGTTAATACAAGTGCCTAATATTTTTCAAATTATTTAAAAAAGTGGCAAATCCACTCTTCGCCCATGTGAAAACCCAAACCAAACCCTGATTCATTCTAACCTACCAAGGACATCACCAACCACTAGGAAAAGGACAGGAAATAATGTCTCTCGCCTAATCCCAGTCCCAGTAGAGGCAAAAATTCCACCCCTAGGCTTACTATTTACCAGAAATAGGATAGTTAACAAATCTAATGCAATTCCATAACCAAGATCTCCCCTTGAACCCAAAAATTTTCATTCAAACCACCTTATCCAAGAAACCCAAATCCACATTATCAGTCTCTCAAAACCAATCTCTTTTTTTTCTCCTTCTTCTTTTTCATAACAAACACAACTTTCATTATCAAAAAGAATGATACAAAAGGAGGGGGAGAACGTCTTACTCAAAATCAATCTTGAAAACAATTCTTTCTCACTAACAAGCTATATGGTTCTCAATAGCATCATTACCAACCACCCCTTCCTTCTTTCTCTCTCACACGCACCTCTGCTTCTTCCTCCCTCTTCAAACCCTAATCCTAACCTAACCTCCTCCCTTCGGATTTGAAATGAAAGGCGGTAAATTGAAGACGGAGTCAAAGAAAGCAGACACCAAGCTTGCAGTGCAAAAAGGTGCAGCCAACGTGGGCAAGAAAGGAAGTAAGAAGGCAGGGTAAGATCCTAACAAACCCAAGAGCCCTGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAAGAAGAAGTTCAATGAGGAGAATCCGAATAACAGCTTAGCAAAAAGAAGGACAATAATAACATCAACACAAAAGTTGTTGGAGGTGGGGGGAAGGTGAGAACTGCTTTACAGCCAGTGCCAAAAAACAAAATGACCATGGATGAATTGGAGAAGAGATTTTAGAAGTCTTGAGAGAATTGATTGTGCATGGTTCAAACTGTGGTTTGCCTCATGTTCTTTGTGTTCTTGAATTTGTGCTTCATTTGTGGGGGTTTTATATTCCATGATGTTTTTTGAGAGGGAAAAATGAGGTAAACAATTAGTTTGTCTGATTTTTTGTTCATCAGTTTAATAATAAAAAATGCTATGCAGTTTGTGTTTCAAAAAAAGAATAACAAAGCAGTGTCTACTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCGGATGCTGAAAAAGCACCTTACAATGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGGAACAGGCCAGTGGAGCCAATGTTGCGAAAGAAGATGAATCTGAGAAGTAAATGTCAGAGGTGAACGATGATGAGGATGGAGATGAGGGCAGCAAAGAGGAGGACAATGACAAGCGATGAAGATGTAGATGATAGTAACGGCATTTAGGCTGTCAATGTACTTGATCTTTCCATAGTATTGGTCTGACCATTTCCTGTTAACTGGTTTTTTATAGCATGAAAATATATTAGTATCTCCCTGTTATTTTGTTTGTGCATTCATTCACGACAAAGGGTAGTAATGGGGGATCACCTGTCTTGTACCTTGCAATGTTAGTTATTCCAAAAAAATGGCATCATTACCAACCAGAACTCATCCATAACCTCTCTCATCATAAAAGCATTGTGAAACTTCGAGACATTTCTCGATCAATATGTCAACACCTTGGCAATAATCAATCTCATAAGATGTTGGTAACACGGTTGATGGATATGAAGTTTTTCACTCTCCTTGCGACTGACTTTTCAGGGATATAACATATGTAGGTTTCATTGATAGAAGAATCAATAATCCCTCATAGTGTTCTCACAGAGTTTTTCAGTACCTTTCCATTGTTTTTCATTCTAAAAACTGCCGCCACTACCAGTAATTCCTTGTTTGGTTCTTGTGGGCTCCTCTACTTCAGGCTCTTGTGTCTAGTCCTTTCTTTTGAACAACTTTCAATTTTCTTGATAAATATCCTAAGCAAGCTTGTTGATGCAATTCTCAAAAATGTCAGCTTAAAAACTCCTCTAGAGAAATAGCAACTGAGACGAGCAATTAAATAATTTAATGTAAGACGTCTATATACTTTGCACACTTCCTGCATCTTTACCTGTATCAGATAAATATAATATCTAATAATAGCAAGATCGAGGAAATACCAACGTAAGTAGAGTATAGTGGATATTTTCATCAATGCTCAAAAACCACAAAAATAACTCACATATACACTTCACTCAAATGCAGAGCACAATTAACAAGTAGAAAAGACCCAAGAATAAAGGAATGAAAACATGGAGTGGTAACAGAAAATGATACCTCCCACTCTTCGTGGCTTTGGATGTTTTCATAGGCCATTAAAAATGGTTTCATCTTCTCAAGTGCATCCCGAAGAGGAATAGGTGGATTCTCATCAATATCAGGATTACTTTCAAAATCTCCCATCAAGTACTCCGGCTCACACTCTATCTGCCATACAGAAAAAAGTCAAAACGAGCGTTAGTAACCCAATCTCTACAATTTTCAGGATAAACTTAAACAAAATCAGATTTGTAATAATTCAACCAGCACACTATTCAATTCATCACTCGATCACAAACACCGAAAACAGTATACTTTCCAATCATGCGAAAACAGTTTTGTCTTTTTTTTTTTTTAATTGCTTCCTCTCCTATAGATAAGATAATTTTTCAAGCATTATAGAAGTCCAAGAGCCCAAAAAGAGTCAACATTCTGGTTTGGACTATGATTTTTGGCACTCTTAACTGTGCTGCCATGTTACAGCATAAGGTCGCTCCTATTTTTTGAGTGTCCATTTTCTACTAATTGCTGGTGAAAACTCTTCTCATATTTTAATTTGTCTTGGACTTTTGGAAATTCTTTCCAGGATAATGTATCTCAACTGTTGGCTGGCCCCTCACTCTCATCCAAAACACAAGTTTTATGGTCAAATGCAGTTAAAGCCATACTTTCAGAACTTTTGTTCTAGCTTCTTCATGGAGTTCACAATCCAAGTTCTTTGCAAATTATTTCATACAAGACATATGCCTCAATGCTTTCATTGTTACTGTTTAGCATTGTTGTTTTTGTTAGTATGTCTTAATTCTATATGATATATTAAGTAATGGGAAATGACGAGGATGCTAAGATTGTGTCAACCTAGTTGAGATAGCCTAGTGCCTCTCTTGACCCATAGTTCTATTTGAGTTGTATGATTTCTATGTCCCTTTATACTCGGAGCACTAGCCTCATATCAATGAAAATTTGTTTCCATTTCAAAAAATCATGCCAAAATAGTTTAGAGCTAATCCTAATACGCAGTCCATTTTATGTCCTTAGAGAGCAAAAACAGGGACAAAAAAGACGTAGGAAGTGCTCACCATATAATTAGTATGCACCGCATCCAAATACTCTTCCTCCAGTGGCGAAGGCAGCACTCTAACACTCATCTCTTCAAACCCTTCAACCAGTTGGTTCATATGTTCAGTCCCAATCCTCTTTGCCAGCTTTTCACCGTCTGCATTGTCGCCTAAATAAAGTCCTGCAGCATATCCATCCTCCATATCTTGAACTCTTCCTCTCTCCCATCTCTCCCCAGTTCTAAAGACCCCCCTTCCTCTCCCTCTGAATCCTCCTCTGCCTCGAAACGTTCCTCTGCCCCGGAGCCCGCTTTTCCCTCGACCACCACCATCTTCACCATCAGGCCCGATCCTTGACATCATCCCACCAGTGTTCCTCCCAGGTCCATCACGGCTCATCCTTTGGCCGCCGCCACGACCCCTTCCAGGCTCACCAACTCCACTAGGTCTGAGATGACGATTCTCCTGCTTTGGTTGAGCTTCCTGCCCTGGTTGCTTCATAGGTTTTCCTCGTCCAACACCGGGAAATCCAGAAAGTAAAGTATCAGGTAAGTTTCTTTCTCCCACACCCCTGTGTAACGCGCCAGGTCGAGTAGTTGAAGCCGAGTCGCCCGCATTATCCTTCGAGAAAAACACAGGTTTCTTAGGCTCCGAATCTGACCCCTTCGACGAACCTGGACCAGAAGGGGAACGAATCGGTGGCGGGGCATCAACTCTACCCCGACCAGCAGACGATGGGTTAACAGAGGGCGAAAAGGAAGAGAAAGATGGAAGAATTGGGGAGGAAGGAGTGGGTTTACCATGTCCAAGGCCAGGAGTAGGACGAGAACCTACGGAATCTTGTTTAGACGTATTTGAATCTTCTTGA

mRNA sequence

ATGTCACGCGGTAAATTGAAGACGGAGTCAAAGAAAGCAGACACCAAGCTTGCAGTGCAAAAAGGTGCAGCCAACGTGGGCAAGAAAGGAAGTAAGAAGGCAGGTTTAATAATAAAAAATGCTATGCAGTTTGTGTTTCAAAAAAAGAATAACAAAGCAGTGTCTACTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCGGATGCTGAAAAAGCACCTTACAATGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGGAACAGGCCAGTGGAGCCAATGTTGCGAAAGAAGATGAATCTGAGAAGATGGAGATGAGGGCAGCAAAGAGGAGGACAATGACAAGCGATGAAGATGTAGATGATATTCTAAAGACCCCCCTTCCTCTCCCTCTGAATCCTCCTCTGCCTCGAAACGTTCCTCTGCCCCGGAGCCCGCTTTTCCCTCGACCACCACCATCTTCACCATCAGGCCCGATCCTTGACATCATCCCACCAGTGTTCCTCCCAGGTCCATCACGGCTCATCCTTTGGCCGCCGCCACGACCCCTTCCAGGCTCACCAACTCCACTAGGTTTTCCTCGTCCAACACCGGGAAATCCAGAAAGTAAAGTATCAGGTAAGTTTCTTTCTCCCACACCCCTGTGTAACGCGCCAGGTCGAGTAGTTGAAGCCGAGTCGCCCGCATTATCCTTCGAGAAAAACACAGGTTTCTTAGGCTCCGAATCTGACCCCTTCGACGAACCTGGACCAGAAGGGGAACGAATCGGTGGCGGGGCATCAACTCTACCCCGACCAGCAGACGATGGGTTAACAGAGGGCGAAAAGGAAGAGAAAGATGGAAGAATTGGGGAGGAAGGAGTGGGTTTACCATGTCCAAGGCCAGGAGTAGGACGAGAACCTACGGAATCTTGTTTAGACGTATTTGAATCTTCTTGA

Coding sequence (CDS)

ATGTCACGCGGTAAATTGAAGACGGAGTCAAAGAAAGCAGACACCAAGCTTGCAGTGCAAAAAGGTGCAGCCAACGTGGGCAAGAAAGGAAGTAAGAAGGCAGGTTTAATAATAAAAAATGCTATGCAGTTTGTGTTTCAAAAAAAGAATAACAAAGCAGTGTCTACTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCGGATGCTGAAAAAGCACCTTACAATGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGGAACAGGCCAGTGGAGCCAATGTTGCGAAAGAAGATGAATCTGAGAAGATGGAGATGAGGGCAGCAAAGAGGAGGACAATGACAAGCGATGAAGATGTAGATGATATTCTAAAGACCCCCCTTCCTCTCCCTCTGAATCCTCCTCTGCCTCGAAACGTTCCTCTGCCCCGGAGCCCGCTTTTCCCTCGACCACCACCATCTTCACCATCAGGCCCGATCCTTGACATCATCCCACCAGTGTTCCTCCCAGGTCCATCACGGCTCATCCTTTGGCCGCCGCCACGACCCCTTCCAGGCTCACCAACTCCACTAGGTTTTCCTCGTCCAACACCGGGAAATCCAGAAAGTAAAGTATCAGGTAAGTTTCTTTCTCCCACACCCCTGTGTAACGCGCCAGGTCGAGTAGTTGAAGCCGAGTCGCCCGCATTATCCTTCGAGAAAAACACAGGTTTCTTAGGCTCCGAATCTGACCCCTTCGACGAACCTGGACCAGAAGGGGAACGAATCGGTGGCGGGGCATCAACTCTACCCCGACCAGCAGACGATGGGTTAACAGAGGGCGAAAAGGAAGAGAAAGATGGAAGAATTGGGGAGGAAGGAGTGGGTTTACCATGTCCAAGGCCAGGAGTAGGACGAGAACCTACGGAATCTTGTTTAGACGTATTTGAATCTTCTTGA

Protein sequence

MSRGKLKTESKKADTKLAVQKGAANVGKKGSKKAGLIIKNAMQFVFQKKNNKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVAKEDESEKMEMRAAKRRTMTSDEDVDDILKTPLPLPLNPPLPRNVPLPRSPLFPRPPPSSPSGPILDIIPPVFLPGPSRLILWPPPRPLPGSPTPLGFPRPTPGNPESKVSGKFLSPTPLCNAPGRVVEAESPALSFEKNTGFLGSESDPFDEPGPEGERIGGGASTLPRPADDGLTEGEKEEKDGRIGEEGVGLPCPRPGVGREPTESCLDVFESS

Homology

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BLAST of Clc07G10245.1 vs. NCBI nr
Match: XP_038896795.1 (HMG1/2-like protein isoform X1 [Benincasa hispida])

HSP 1 Score: 138.7 bits (348), Expect = 9.1e-29
Identity = 89/146 (60.96%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 1   MSRGKLKTESKKADTKLAVQKGAANVGKKGSKKAGLIIKNAMQ-----FVFQKK------ 60
           M  GK K++SKKAD KLAV+KGAAN GKKGSKKAG       +     FVF ++      
Sbjct: 1   MKGGKSKSDSKKADAKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  ----NNKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVA 120
               NNKAVS VGKAAGQKWKSM+DAEKAPY AKADKRK+EYEKNMKAYNK+QASGAN  
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKIEYEKNMKAYNKKQASGANAE 120

Query: 121 KEDESEKMEMRAAKRRTMTSDEDVDD 132
           +EDESEK          +  DED D+
Sbjct: 121 EEDESEK------SMSEVNDDEDGDE 140

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BLAST of Clc07G10245.1 vs. NCBI nr
Match: XP_008452973.1 (PREDICTED: HMG1/2-like protein [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-28
Identity = 93/146 (63.70%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 1   MSRGKLKTESKKADTKLAVQKGAANVGKKGSKKAGLIIKNAMQ-----FVFQKK------ 60
           M  GK K+ESKKADTKLAV+KGAA  GKKGSKKAG       +     FVF ++      
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAA--GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  ----NNKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVA 120
               NNKAVS VGKAAGQKWKSMSDAEKAPY AKADKRKVEYEKNMKAYNK+QASGAN A
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 KEDESEKMEMRAAKRRTMTSDEDVDD 132
            EDESEK          +  DED D+
Sbjct: 121 DEDESEK------SMSEVNDDEDGDE 138

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BLAST of Clc07G10245.1 vs. NCBI nr
Match: XP_022936925.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo] >KAG7024101.1 hypothetical protein SDJN02_12914, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-28
Identity = 91/148 (61.49%), Postives = 104/148 (70.27%), Query Frame = 0


Query: 1   MSRGKLKTESKKADTKLAVQKGAANVGKKGSKKAGLIIKNAMQ-----FVFQKK------ 60
           M  GK K+ESKKADTKLAV+KGAAN GKKGSKKA        +     FVF ++      
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  ----NNKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVA 120
               NNKAVS VGKAAGQKWKSMS+A+KAPY AKADKRKVEYEK MKAYNK+QASGAN A
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 KEDESEK--MEMRAAKRRTMTSDEDVDD 132
           +EDESEK   E+   +     S+E+ DD
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDD 148

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BLAST of Clc07G10245.1 vs. NCBI nr
Match: XP_022975791.1 (HMG1/2-like protein [Cucurbita maxima])

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-28
Identity = 91/148 (61.49%), Postives = 104/148 (70.27%), Query Frame = 0


Query: 1   MSRGKLKTESKKADTKLAVQKGAANVGKKGSKKAGLIIKNAMQ-----FVFQKK------ 60
           M  GK K+ESKKADTKLAV+KGAAN GKKGSKKA        +     FVF ++      
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  ----NNKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVA 120
               NNKAVS VGKAAGQKWKSMS+A+KAPY AKADKRKVEYEK MKAYNK+QASGAN A
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 KEDESEK--MEMRAAKRRTMTSDEDVDD 132
           +EDESEK   E+   +     S+E+ DD
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDD 148

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BLAST of Clc07G10245.1 vs. NCBI nr
Match: KAG6591217.1 (DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-28
Identity = 91/148 (61.49%), Postives = 104/148 (70.27%), Query Frame = 0


Query: 1   MSRGKLKTESKKADTKLAVQKGAANVGKKGSKKAGLIIKNAMQ-----FVFQKK------ 60
           M  GK K+ESKKADTKLAV+KGAAN GKKGSKKA        +     FVF ++      
Sbjct: 226 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 285

Query: 61  ----NNKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVA 120
               NNKAVS VGKAAGQKWKSMS+A+KAPY AKADKRKVEYEK MKAYNK+QASGAN A
Sbjct: 286 EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 345

Query: 121 KEDESEK--MEMRAAKRRTMTSDEDVDD 132
           +EDESEK   E+   +     S+E+ DD
Sbjct: 346 EEDESEKSVSEVNDDEEGDEGSEEEDDD 373

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BLAST of Clc07G10245.1 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.2e-21
Identity = 75/149 (50.34%), Postives = 92/149 (61.74%), Query Frame = 0


Query: 1   MSRGKLKTESKKADTKLAV-QKGAANVGKKGSKK---------------AGLIIKNAMQF 60
           M  GK KTESK+AD KLAV +KGAA   +K + K               A  +     + 
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  VFQKKN--NKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGA 120
           VF K++  NKAVS VGKAAG KWK+MSDAEKAPY AK++KRKVEYEKNM+AYNK+QA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NVAKEDESEKMEMRAAKRRTMTSDEDVDD 132
               E+ESEK         +  +DED D+
Sbjct: 121 TGGDEEESEKSV-------SEVNDEDDDE 142

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BLAST of Clc07G10245.1 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-14
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 2   SRGKLKTESKKADTKLAVQKGAANVGKKGSK---------KAGLIIKNAMQFVFQKKN-- 61
           ++ K +T S K        KGA   GK  +K          A  +     +  F+K+N  
Sbjct: 4   AKSKTETRSSKLSVTKKPAKGAGR-GKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPK 63

Query: 62  NKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVAKEDES 121
           NK+V+TVGKAAG KWKS+SD+EKAPY AKA+KRKVEYEKN+KAYNK+   G    +E + 
Sbjct: 64  NKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDK 123

Query: 122 EKMEMRAAKRRTMTSDEDVDD 132
              E+         S+E+ DD
Sbjct: 124 SVSEVNDEDDAEDGSEEEEDD 143

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BLAST of Clc07G10245.1 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-13
Identity = 61/143 (42.66%), Postives = 86/143 (60.14%), Query Frame = 0


Query: 1   MSRGKLKTESKKADTKLAVQKGAANVGK-----------KGSKKAGLIIKNAMQFVFQKK 60
           M  GK K    K+D KLAV+K AA+  K           K    A  +     +  +++K
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 61  --NNKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVAKE 120
             NNK+V+ VGKA G KWK ++ AEKAP+ +KA+KRK EYEKN++AYNK+QA+GA  A+E
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGA--AEE 120

Query: 121 DESEKMEMRAAKRRTMTSDEDVD 131
           +ES+       K R+  +D+D D
Sbjct: 121 EESD-------KSRSEVNDDDED 131

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BLAST of Clc07G10245.1 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-13
Identity = 55/137 (40.15%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 2   SRGKLKTESKKADTKLAVQKGAANVGKKGSK-----KAGLIIKNAMQFVFQKKN--NKAV 61
           ++ K +T S K        KGA    K  +K      A  +     +  +++++  NK+V
Sbjct: 4   AKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSV 63

Query: 62  STVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVAKEDESEKME 121
           + VGKA G+KWKS+SD+EKAPY AKADKRKVEYEKNMKAYNK+   G    +E +    E
Sbjct: 64  AAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSVSE 123

Query: 122 MRAAKRRTMTSDEDVDD 132
           +         S+E+ DD
Sbjct: 124 VNDEDDAEDGSEEEEDD 140

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BLAST of Clc07G10245.1 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-11
Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 3   RGKLKTESKKADTKLAVQKGAANVGKKGSK-KAG-------------LIIKNAMQFVFQK 62
           +G     + KAD KLAV+   A    KG K KAG              +     +  F++
Sbjct: 2   KGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKE 61

Query: 63  KN--NKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVA- 122
           KN  NK+V+ VGKAAG +WKS+S+++KAPY AKA+K K+EY K + AYNK +++ A  A 
Sbjct: 62  KNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAP 121

Query: 123 KEDESEKMEMRAAKRRTMTSDEDVDD 132
            ++E E+ E  + K ++  +DED ++
Sbjct: 122 AKEEEEEDEEESDKSKSEVNDEDDEE 147

[Close]

BLAST of Clc07G10245.1 vs. ExPASy TrEMBL
Match: A0A1S3BW96 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-28
Identity = 93/146 (63.70%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 1   MSRGKLKTESKKADTKLAVQKGAANVGKKGSKKAGLIIKNAMQ-----FVFQKK------ 60
           M  GK K+ESKKADTKLAV+KGAA  GKKGSKKAG       +     FVF ++      
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAA--GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  ----NNKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVA 120
               NNKAVS VGKAAGQKWKSMSDAEKAPY AKADKRKVEYEKNMKAYNK+QASGAN A
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 KEDESEKMEMRAAKRRTMTSDEDVDD 132
            EDESEK          +  DED D+
Sbjct: 121 DEDESEK------SMSEVNDDEDGDE 138

[Close]

BLAST of Clc07G10245.1 vs. ExPASy TrEMBL
Match: A0A6J1IF57 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-28
Identity = 91/148 (61.49%), Postives = 104/148 (70.27%), Query Frame = 0


Query: 1   MSRGKLKTESKKADTKLAVQKGAANVGKKGSKKAGLIIKNAMQ-----FVFQKK------ 60
           M  GK K+ESKKADTKLAV+KGAAN GKKGSKKA        +     FVF ++      
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  ----NNKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVA 120
               NNKAVS VGKAAGQKWKSMS+A+KAPY AKADKRKVEYEK MKAYNK+QASGAN A
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 KEDESEK--MEMRAAKRRTMTSDEDVDD 132
           +EDESEK   E+   +     S+E+ DD
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDD 148

[Close]

BLAST of Clc07G10245.1 vs. ExPASy TrEMBL
Match: A0A6J1FF34 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-28
Identity = 91/148 (61.49%), Postives = 104/148 (70.27%), Query Frame = 0


Query: 1   MSRGKLKTESKKADTKLAVQKGAANVGKKGSKKAGLIIKNAMQ-----FVFQKK------ 60
           M  GK K+ESKKADTKLAV+KGAAN GKKGSKKA        +     FVF ++      
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  ----NNKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVA 120
               NNKAVS VGKAAGQKWKSMS+A+KAPY AKADKRKVEYEK MKAYNK+QASGAN A
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 KEDESEK--MEMRAAKRRTMTSDEDVDD 132
           +EDESEK   E+   +     S+E+ DD
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDD 148

[Close]

BLAST of Clc07G10245.1 vs. ExPASy TrEMBL
Match: A0A6J1CNM1 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-26
Identity = 86/146 (58.90%), Postives = 97/146 (66.44%), Query Frame = 0


Query: 1   MSRGKLKTESKKADTKLAVQKGAANVGKKGSKKAGLIIKNAMQ-----FVFQKK------ 60
           M  GK K+ESKKAD KL+V+KGAA  G    KKAG       +     FVF ++      
Sbjct: 1   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  ----NNKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVA 120
               NNKAVS VGKAAGQKWKS+SDAEKAPY AKADKRKVEYEKNMKAYNK+QASGAN A
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 KEDESEKMEMRAAKRRTMTSDEDVDD 132
           +EDESEK          +  DED D+
Sbjct: 121 EEDESEK------SMSEVNDDEDGDE 140

[Close]

BLAST of Clc07G10245.1 vs. ExPASy TrEMBL
Match: A0A6J1IV01 (HMG1/2-like protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-24
Identity = 83/127 (65.35%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 1   MSRGKLKTESKKADTKLAVQKGAANVGKKGSKKAGLIIKNAMQ-----FVFQKK------ 60
           M  GK KTES K   KLAV+KGAA   KKGSKKAG       +     FVF ++      
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAA---KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFS 60

Query: 61  ----NNKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVA 113
               NNKAVS VGKAAG KWKSMSDAEKAPY AKADKRKVEYEKNMKAYNK+QASGAN A
Sbjct: 61  EENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAA 120

[Close]

BLAST of Clc07G10245.1 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-15
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 2   SRGKLKTESKKADTKLAVQKGAANVGKKGSK---------KAGLIIKNAMQFVFQKKN-- 61
           ++ K +T S K        KGA   GK  +K          A  +     +  F+K+N  
Sbjct: 4   AKSKTETRSSKLSVTKKPAKGAGR-GKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPK 63

Query: 62  NKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVAKEDES 121
           NK+V+TVGKAAG KWKS+SD+EKAPY AKA+KRKVEYEKN+KAYNK+   G    +E + 
Sbjct: 64  NKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDK 123

Query: 122 EKMEMRAAKRRTMTSDEDVDD 132
              E+         S+E+ DD
Sbjct: 124 SVSEVNDEDDAEDGSEEEEDD 143

[Close]

BLAST of Clc07G10245.1 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 79.3 bits (194), Expect = 6.1e-15
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 2   SRGKLKTESKKADTKLAVQKGAANVGKKGSK---------KAGLIIKNAMQFVFQKKN-- 61
           ++ K +T S K        KGA   GK  +K          A  +     +  F+K+N  
Sbjct: 4   AKSKTETRSSKLSVTKKPAKGAGR-GKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPK 63

Query: 62  NKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVAKEDES 121
           NK+V+TVGKAAG KWKS+SD+EKAPY AKA+KRKVEYEKN+KAYNK+   G    +E + 
Sbjct: 64  NKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDK 123

Query: 122 EKMEMRAAKRRTMTSDEDVDD 132
              E+         S+E+ DD
Sbjct: 124 SVSEVNDEDDAEDGSEEEDDD 143

[Close]

BLAST of Clc07G10245.1 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-14
Identity = 55/137 (40.15%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 2   SRGKLKTESKKADTKLAVQKGAANVGKKGSK-----KAGLIIKNAMQFVFQKKN--NKAV 61
           ++ K +T S K        KGA    K  +K      A  +     +  +++++  NK+V
Sbjct: 4   AKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSV 63

Query: 62  STVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVAKEDESEKME 121
           + VGKA G+KWKS+SD+EKAPY AKADKRKVEYEKNMKAYNK+   G    +E +    E
Sbjct: 64  AAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSVSE 123

Query: 122 MRAAKRRTMTSDEDVDD 132
           +         S+E+ DD
Sbjct: 124 VNDEDDAEDGSEEEEDD 140

[Close]

BLAST of Clc07G10245.1 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-14
Identity = 59/140 (42.14%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 2   SRGKLKTESKKADTKLAVQKGAANVGKKGSK---------KAGLIIKNAMQFVFQKKN-- 61
           ++ K +T S K        KGA   GK  +K          A  +     +  F+K+N  
Sbjct: 4   AKSKTETRSSKLSVTKKPAKGAGR-GKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPK 63

Query: 62  NKAVSTVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVAKEDES 121
           NK+V+TVGKAAG KWKS+SD+EKAPY AKA+KRKVEYEKN+KAYNK+   G    +E + 
Sbjct: 64  NKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDK 123

Query: 122 EKMEMRAAKRRTMTSDEDVD 131
              E+         S+ED D
Sbjct: 124 SVSEVNDEDDAEDGSEEDDD 142

[Close]

BLAST of Clc07G10245.1 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 76.6 bits (187), Expect = 3.9e-14
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 2   SRGKLKTESKKADTKLAVQKGAANVGKKGSK-----KAGLIIKNAMQFVFQKKN--NKAV 61
           ++ K +T S K        KGA    K  +K      A  +     +  +++++  NK+V
Sbjct: 4   AKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSV 63

Query: 62  STVGKAAGQKWKSMSDAEKAPYNAKADKRKVEYEKNMKAYNKEQASGANVAKEDESEK 113
           + VGKA G+KWKS+SD+EKAPY AKADKRKVEYEKNMKAYNK+   G    +++ES+K
Sbjct: 64  AAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDEESDK 119

The following BLAST results are available for this feature:

BLAST of Clc07G10245.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896795.1	9.1e-29	60.96	HMG1/2-like protein isoform X1 [Benincasa hispida]	[more]
XP_008452973.1	2.6e-28	63.70	PREDICTED: HMG1/2-like protein [Cucumis melo]	[more]
XP_022936925.1	3.4e-28	61.49	HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cu...	[more]
XP_022975791.1	3.4e-28	61.49	HMG1/2-like protein [Cucurbita maxima]	[more]
KAG6591217.1	3.4e-28	61.49	DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma ...	[more]

BLAST of Clc07G10245.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26585	7.2e-21	50.34	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
O49596	6.6e-14	41.84	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P40619	1.1e-13	42.66	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P93047	1.5e-13	40.15	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P27347	2.3e-11	38.36	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]

BLAST of Clc07G10245.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BW96	1.3e-28	63.70	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1	[more]
A0A6J1IF57	1.7e-28	61.49	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1	[more]
A0A6J1FF34	1.7e-28	61.49	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1	[more]
A0A6J1CNM1	2.7e-26	58.90	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1	[more]
A0A6J1IV01	1.9e-24	65.35	HMG1/2-like protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 ...	[more]

BLAST of Clc07G10245.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20693.1	4.7e-15	41.84	high mobility group B2	[more]
AT1G20693.3	6.1e-15	41.84	high mobility group B2	[more]
AT1G20696.1	1.0e-14	40.15	high mobility group B3	[more]
AT1G20693.2	1.0e-14	42.14	high mobility group B2	[more]
AT1G20696.3	3.9e-14	44.07	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..294
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..321
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..206
None	No IPR available	PANTHER	PTHR46261:SF22	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 1..115
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 46..92 e-value: 7.83697E-10 score: 52.245
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 27..96 e-value: 2.5E-6 score: 37.0
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 50..95 e-value: 2.4E-10 score: 40.7
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 28..95 score: 11.72483
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 31..119 e-value: 4.6E-12 score: 48.2
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 48..100
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..115

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc07G10245	Clc07G10245	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc07G10245.1-exon	Clc07G10245.1-exon-ClcChr07:24808666..24809030	exon
Clc07G10245.1-exon	Clc07G10245.1-exon-ClcChr07:24809088..24809294	exon
Clc07G10245.1-exon	Clc07G10245.1-exon-ClcChr07:24811500..24811558	exon
Clc07G10245.1-exon	Clc07G10245.1-exon-ClcChr07:24811587..24811817	exon
Clc07G10245.1-exon	Clc07G10245.1-exon-ClcChr07:24812207..24812303	exon
Clc07G10245.1-exon	Clc07G10245.1-exon-ClcChr07:24814245..24814251	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc07G10245.1-cds	Clc07G10245.1-cds-ClcChr07:24808666..24809030	CDS
Clc07G10245.1-cds	Clc07G10245.1-cds-ClcChr07:24809088..24809294	CDS
Clc07G10245.1-cds	Clc07G10245.1-cds-ClcChr07:24811500..24811558	CDS
Clc07G10245.1-cds	Clc07G10245.1-cds-ClcChr07:24811587..24811817	CDS
Clc07G10245.1-cds	Clc07G10245.1-cds-ClcChr07:24812207..24812303	CDS
Clc07G10245.1-cds	Clc07G10245.1-cds-ClcChr07:24814245..24814251	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc07G10245.1	Clc07G10245.1-protein	polypeptide