Clc07G03540.2 (mRNA) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCATCTTTCATTCTTTTCTTCCCCAATTTTCCCTTGGGAAAAGAATATATATATGAGAATTTAGCGGTTGCAATTCACGAACTGATTTCTCATCCGTATTCCCTTTCCCTTTCCTTCCTGCGTCAATTGCCTCGCCCTCCGCAACCTCCGATTTCCGATCTGCCAATTTTCGCCGCGAAGATCGGAGGAGTCGCCGGAAAGTCAAACTAAGCTTTTCTCAGTCTTTCGCCAGAATTCAGTCAAGATGAGTGAGGTTTTCGAGGGTTACGAGCGCCAATATTGTGAACTCTCCGCGAATGTTTCTCGGAAATCCAACTCTTTCTCCGCCTCGGATTCAGGTACTTCCTACGCCTTTGCTGCTCCGATTTCTTTTAGAGATCTTGAGTTAAAATGAGTAGATGCTGAGGTTTCTAAACCGTTGGGGAAGGATGTGAATATGGGACTGGGATGGTAATTGATAGCCGGATTGAAATTTTAGTGTTTCTTACTAGTTCTTCATAGCTAGATTGCAAAATGACTTGCATGAGCACAATTGGATTCTACTTCGGAAATGAACTGGAAAAGGAAGTTGATTATTGAGAGACTCTTCTTTTGATGGTGAACTATTGGAATCTTTGCTAATCTTAGCTTTATGCGTATTGCAGAACAGAAACATCAATGGCTTTCGGAAATCAAAGTTAGTTTGGATGAGGCTGATGTTTTGGTACGTTTAAAGAGTCTTCTATTGGCTTTCTTTCTTTTTCTTTTCAAGTTGGTTACATTCATACTGATATGCATTCAATGTTATATCTTTATTGATTATCTAGATCCGGAAAATGGATCTTGAGGCCAGAAGTTTGCAGCCAGGGGTAAAGGCTATGCTACTTGCTAAGTTACGGGAGTACAAAGCTGATCTTGGAAAACTGAAAAAGGAGTTTAAGAGATTGACATCACCTAATGCTGATCAGGCTGCCCGTGAAGAACTATTGGAGTCTGGAATGGCAGATGCTCATTTGGTAGATTTTCATCATTCAAGTTTTACAGTTGCCTTCAAATTTTGAGTACTACATATACTCTATCTCCTTACTAACGCTCCCCCAATCGTGAGTTGGGTTCTAAGTCTGGAAACAAATTGAGGGAGCATATAATCGATTCAAATGATTTTGTCTTCATGTATTTGTATGAAATGGGCCAAAGTTCTTAGCTATTTTAGTGGCCTATGTTTTAGGCTAAGCTTAACTGGTTAAAATTAAAACAATTATTACTTCTCCTGTTGAGGTTTGAATCTTCACTCCTATGTTTAAATGGTAATATTTCCTTAAAGTCACTGCATATCTTAAGTTCTCGAGATGGTTGTAGTCGTAAAAAGTATTGCTGTAGTCAGTACGGTTATAGCTTGTGTAAATGCTCCCCTCTCTTCCATCAGGATAGCTTTTTCTCCCTCCTTTTCAATTGGGAAGATTTTTTTGGTGGTTCCCAATTTATGGGTTCTCCTCTTTAGTAATTTCAAACCGTCAATAAATTACTATTAAGTTCTCTGGATATGTTAGTTATTATACAACTTTCTATTTATTAAACCTTTGCGATATGAGCATCTTATCCAGTCTTTGTTTTTCTTCAATCACTCCTTTGACTGAAGTGATGATGGTTTCTAAGCTTTGTAGATAGACAGTAGACTCATCTTTTTCCCTCTTGATGGCTGTTGCTAGGTCTCAATAATTGAAACAGAATCTGTTTCTTGAGATATTGTCTAATTGAGTTGAGTTTCTCAATGCTTTCTATTATATGACATCATATTGAATTTCCGTCATGGATCAATCCATATCTCTTATACATCAAATATCGATATTGTTTTAGATTTGATACATAAAAGATATTTGTCTTGCATAGGTTAAATTTACCATTTCTATTATTTTTACTGACATTCTTACAGGCTTCGGCTGATCAAAGAGAGAGGATGACAATGTCCATAGAGAGAATAAATCAGTCAGGTGAAAGAATCACAGAGAGTAGAAGAACCATGCTGGAGACCGAGGAGCTCGGTGTCTCTATCCTCCAGGACTTGCATCAACAGCGCGAAACTCTTCTCCAGTCCCATAAGAGAGTAAGTTTTGTCTTTGATATTATGTTCTGGCTGAGTAGCAAGTCCTATCTTTGATGCCATCAACATTCTTAAACTTCAACTCACTCATTTTAATTTCTAGCCCTTTCTCCATCCTTGGGATAATTCAACTGTTAACAACATGCTTCATGTTACAGCTTCATGGGGTAGATAACGCCATTGATAAGAGTAAAAAAGTTTTGGCCACGATGTCTCGAAGAATCAGTCGAAATAAGTGGATCGTCGGGTCAGTTATTGGAGTTCTGGTACTTGTAATTATCCTTATACTGTATCTTAAGCTCTAACATCATTGAGATGTTTCCTTCATCACAAAATGAATTCTACTCTTATCATCTGACTTTCCAATCTTACGAATTGGTTGTCGATCATATGTTTGATGTATTTCGTTGCGGTGTATGGTGCTCATGTCTGTAATCGGTTGTAGCGGTTTGATTAATCAATACCCAGCCAGATAGTAAGCATTTCTTGATTGCTTATTTAAGTAGTTAGTTATTTGTAATTAATCAATTGATTTTCTTTCCTAATGGTTCCATTGATGGTTTTCCTTTTTTTGTACTGGAACTAACTATTTTGGAGTTGGGTTTCCCTTCATTCTAGTTAACAAACAATCATATCAGGGGCTGATTGATTT TCCATCTTTCATTCTTTTCTTCCCCAATTTTCCCTTGGGAAAAGAATATATATATGAGAATTTAGCGGTTGCAATTCACGAACTGATTTCTCATCCGTATTCCCTTTCCCTTTCCTTCCTGCGTCAATTGCCTCGCCCTCCGCAACCTCCGATTTCCGATCTGCCAATTTTCGCCGCGAAGATCGGAGGAGTCGCCGGAAAGTCAAACTAAGCTTTTCTCAGTCTTTCGCCAGAATTCAGTCAAGATGAGTGAGGTTTTCGAGGGTTACGAGCGCCAATATTGTGAACTCTCCGCGAATGTTTCTCGGAAATCCAACTCTTTCTCCGCCTCGGATTCAGATGCTGAGGTTTCTAAACCGTTGGGGAAGGATGTGAATATGGGACTGGGATGCTTTATGCGTATTGCAGAACAGAAACATCAATGGCTTTCGGAAATCAAAGTTAGTTTGGATGAGGCTGATGTTTTGATCCGGAAAATGGATCTTGAGGCCAGAAGTTTGCAGCCAGGGGTAAAGGCTATGCTACTTGCTAAGTTACGGGAGTACAAAGCTGATCTTGGAAAACTGAAAAAGGAGTTTAAGAGATTGACATCACCTAATGCTGATCAGGCTGCCCGTGAAGAACTATTGGAGTCTGGAATGGCAGATGCTCATTTGGTAGATTTTCATCATTCAAGTTTTACAGCTTCGGCTGATCAAAGAGAGAGGATGACAATGTCCATAGAGAGAATAAATCAGTCAGGTGAAAGAATCACAGAGAGTAGAAGAACCATGCTGGAGACCGAGGAGCTCGGTGTCTCTATCCTCCAGGACTTGCATCAACAGCGCGAAACTCTTCTCCAGTCCCATAAGAGACTTCATGGGGTAGATAACGCCATTGATAAGAGTAAAAAAGTTTTGGCCACGATGTCTCGAAGAATCAGTCGAAATAAGTGGATCGTCGGGTCAGTTATTGGAGTTCTGGTACTTGTAATTATCCTTATACTGTATCTTAAGCTCTAACATCATTGAGATGTTTCCTTCATCACAAAATGAATTCTACTCTTATCATCTGACTTTCCAATCTTACGAATTGGTTGTCGATCATATGTTTGATGTATTTCGTTGCGGTGTATGGTGCTCATGTCTGTAATCGGTTGTAGCGGTTTGATTAATCAATACCCAGCCAGATAGTAAGCATTTCTTGATTGCTTATTTAAGTAGTTAGTTATTTGTAATTAATCAATTGATTTTCTTTCCTAATGGTTCCATTGATGGTTTTCCTTTTTTTGTACTGGAACTAACTATTTTGGAGTTGGGTTTCCCTTCATTCTAGTTAACAAACAATCATATCAGGGGCTGATTGATTT ATGAGTGAGGTTTTCGAGGGTTACGAGCGCCAATATTGTGAACTCTCCGCGAATGTTTCTCGGAAATCCAACTCTTTCTCCGCCTCGGATTCAGATGCTGAGGTTTCTAAACCGTTGGGGAAGGATGTGAATATGGGACTGGGATGCTTTATGCGTATTGCAGAACAGAAACATCAATGGCTTTCGGAAATCAAAGTTAGTTTGGATGAGGCTGATGTTTTGATCCGGAAAATGGATCTTGAGGCCAGAAGTTTGCAGCCAGGGGTAAAGGCTATGCTACTTGCTAAGTTACGGGAGTACAAAGCTGATCTTGGAAAACTGAAAAAGGAGTTTAAGAGATTGACATCACCTAATGCTGATCAGGCTGCCCGTGAAGAACTATTGGAGTCTGGAATGGCAGATGCTCATTTGGTAGATTTTCATCATTCAAGTTTTACAGCTTCGGCTGATCAAAGAGAGAGGATGACAATGTCCATAGAGAGAATAAATCAGTCAGGTGAAAGAATCACAGAGAGTAGAAGAACCATGCTGGAGACCGAGGAGCTCGGTGTCTCTATCCTCCAGGACTTGCATCAACAGCGCGAAACTCTTCTCCAGTCCCATAAGAGACTTCATGGGGTAGATAACGCCATTGATAAGAGTAAAAAAGTTTTGGCCACGATGTCTCGAAGAATCAGTCGAAATAAGTGGATCGTCGGGTCAGTTATTGGAGTTCTGGTACTTGTAATTATCCTTATACTGTATCTTAAGCTCTAA MSEVFEGYERQYCELSANVSRKSNSFSASDSDAEVSKPLGKDVNMGLGCFMRIAEQKHQWLSEIKVSLDEADVLIRKMDLEARSLQPGVKAMLLAKLREYKADLGKLKKEFKRLTSPNADQAAREELLESGMADAHLVDFHHSSFTASADQRERMTMSIERINQSGERITESRRTMLETEELGVSILQDLHQQRETLLQSHKRLHGVDNAIDKSKKVLATMSRRISRNKWIVGSVIGVLVLVIILILYLKL Homology
BLAST of Clc07G03540.2 vs. NCBI nr
Match: XP_038889496.1 (vesicle transport v-SNARE 12-like [Benincasa hispida]) HSP 1 Score: 375.2 bits (962), Expect = 4.5e-100 Identity = 217/251 (86.45%), Postives = 218/251 (86.85%), Query Frame = 0
BLAST of Clc07G03540.2 vs. NCBI nr
Match: XP_008461698.1 (PREDICTED: vesicle transport v-SNARE 12-like [Cucumis melo]) HSP 1 Score: 367.9 bits (943), Expect = 7.2e-98 Identity = 212/251 (84.46%), Postives = 215/251 (85.66%), Query Frame = 0
BLAST of Clc07G03540.2 vs. NCBI nr
Match: XP_004147677.1 (vesicle transport v-SNARE 12 [Cucumis sativus] >KGN50573.1 hypothetical protein Csa_021465 [Cucumis sativus]) HSP 1 Score: 362.8 bits (930), Expect = 2.3e-96 Identity = 209/251 (83.27%), Postives = 214/251 (85.26%), Query Frame = 0
BLAST of Clc07G03540.2 vs. NCBI nr
Match: XP_022996461.1 (vesicle transport v-SNARE 12-like [Cucurbita maxima]) HSP 1 Score: 360.1 bits (923), Expect = 1.5e-95 Identity = 208/251 (82.87%), Postives = 213/251 (84.86%), Query Frame = 0
BLAST of Clc07G03540.2 vs. NCBI nr
Match: XP_023528822.1 (vesicle transport v-SNARE 12-like [Cucurbita pepo subsp. pepo] >KAG7030705.1 Vesicle transport v-SNARE 12 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 357.8 bits (917), Expect = 7.4e-95 Identity = 207/251 (82.47%), Postives = 212/251 (84.46%), Query Frame = 0
BLAST of Clc07G03540.2 vs. ExPASy Swiss-Prot
Match: Q9SEL5 (Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana OX=3702 GN=VTI12 PE=1 SV=3) HSP 1 Score: 256.1 bits (653), Expect = 4.0e-67 Identity = 149/251 (59.36%), Postives = 183/251 (72.91%), Query Frame = 0
BLAST of Clc07G03540.2 vs. ExPASy Swiss-Prot
Match: Q9LVP9 (Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=VTI13 PE=2 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 1.2e-60 Identity = 136/251 (54.18%), Postives = 175/251 (69.72%), Query Frame = 0
BLAST of Clc07G03540.2 vs. ExPASy Swiss-Prot
Match: Q9SEL6 (Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana OX=3702 GN=VTI11 PE=1 SV=2) HSP 1 Score: 229.2 bits (583), Expect = 5.2e-59 Identity = 132/251 (52.59%), Postives = 175/251 (69.72%), Query Frame = 0
BLAST of Clc07G03540.2 vs. ExPASy Swiss-Prot
Match: Q96AJ9 (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens OX=9606 GN=VTI1A PE=1 SV=2) HSP 1 Score: 92.4 bits (228), Expect = 7.6e-18 Identity = 68/246 (27.64%), Postives = 123/246 (50.00%), Query Frame = 0
BLAST of Clc07G03540.2 vs. ExPASy Swiss-Prot
Match: O89116 (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus OX=10090 GN=Vti1a PE=1 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 7.6e-18 Identity = 68/245 (27.76%), Postives = 122/245 (49.80%), Query Frame = 0
BLAST of Clc07G03540.2 vs. ExPASy TrEMBL
Match: A0A1S3CFT2 (vesicle transport v-SNARE 12-like OS=Cucumis melo OX=3656 GN=LOC103500237 PE=3 SV=1) HSP 1 Score: 367.9 bits (943), Expect = 3.5e-98 Identity = 212/251 (84.46%), Postives = 215/251 (85.66%), Query Frame = 0
BLAST of Clc07G03540.2 vs. ExPASy TrEMBL
Match: A0A0A0KLX2 (PH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182770 PE=3 SV=1) HSP 1 Score: 362.8 bits (930), Expect = 1.1e-96 Identity = 209/251 (83.27%), Postives = 214/251 (85.26%), Query Frame = 0
BLAST of Clc07G03540.2 vs. ExPASy TrEMBL
Match: A0A6J1K4T5 (vesicle transport v-SNARE 12-like OS=Cucurbita maxima OX=3661 GN=LOC111491702 PE=3 SV=1) HSP 1 Score: 360.1 bits (923), Expect = 7.3e-96 Identity = 208/251 (82.87%), Postives = 213/251 (84.86%), Query Frame = 0
BLAST of Clc07G03540.2 vs. ExPASy TrEMBL
Match: A0A6J1FWM6 (vesicle transport v-SNARE 12-like OS=Cucurbita moschata OX=3662 GN=LOC111448046 PE=3 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 8.0e-95 Identity = 206/251 (82.07%), Postives = 212/251 (84.46%), Query Frame = 0
BLAST of Clc07G03540.2 vs. ExPASy TrEMBL
Match: A0A6J1CB35 (vesicle transport v-SNARE 12-like OS=Momordica charantia OX=3673 GN=LOC111009979 PE=3 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 4.1e-91 Identity = 200/251 (79.68%), Postives = 209/251 (83.27%), Query Frame = 0
BLAST of Clc07G03540.2 vs. TAIR 10
Match: AT1G26670.1 (Vesicle transport v-SNARE family protein ) HSP 1 Score: 256.1 bits (653), Expect = 2.8e-68 Identity = 149/251 (59.36%), Postives = 183/251 (72.91%), Query Frame = 0
BLAST of Clc07G03540.2 vs. TAIR 10
Match: AT5G39510.1 (Vesicle transport v-SNARE family protein ) HSP 1 Score: 229.2 bits (583), Expect = 3.7e-60 Identity = 132/251 (52.59%), Postives = 175/251 (69.72%), Query Frame = 0
BLAST of Clc07G03540.2 vs. TAIR 10
Match: AT3G29100.1 (vesicle transport V-snare 13 ) HSP 1 Score: 191.8 bits (486), Expect = 6.6e-49 Identity = 105/177 (59.32%), Postives = 137/177 (77.40%), Query Frame = 0
BLAST of Clc07G03540.2 vs. TAIR 10
Match: AT3G29100.2 (vesicle transport V-snare 13 ) HSP 1 Score: 188.3 bits (477), Expect = 7.3e-48 Identity = 104/174 (59.77%), Postives = 134/174 (77.01%), Query Frame = 0
BLAST of Clc07G03540.2 vs. TAIR 10
Match: AT5G39630.1 (Vesicle transport v-SNARE family protein ) HSP 1 Score: 119.0 bits (297), Expect = 5.4e-27 Identity = 81/222 (36.49%), Postives = 123/222 (55.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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