Clc07G02980.2 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc07G02980.2
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	E3 ubiquitin-protein ligase RMA1H1
Location	ClcChr07: 2861943 .. 2863121 (+)
Sequence length	855
RNA-Seq Expression	Clc07G02980.2
Synteny	Clc07G02980.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTGAATTGTCTAAAAAGGGAGAACCAAAACAAGTTCATCTTCTTCATGTAAACATATATTTACTAGTCTTTGTTATTCTTTTCCATTTACATTTTCTCTGTTTCATCAAGTAGTTAGTGGTTGTTTGATCTTTCTAGTCTTCTGGGTTTTGATTCAATATTATATCTAAATTTGGCAGTTTAGGCATCTCAAAAGGGTTGTGTTACAACAAAGCATATGGAAATGGAACAGTACTTCGAGGAGGCCAGCATCCAGATCAATTCATTTGGAGAGAATAAGTCTTCTCTAGAAAATTGGAAATCTGTTTTGGATGCCATGGCTGAAACTCATTGTGATGCCTCTGGGCTATTTGACTGTAATATATGTTTAGAGACAGTGAAAGACCCTGTTGTTACGCTTTGTGGCCATCTCTTTTGTTGGCCTTGCATTTATAAATGGATTCATTTCCAGGACAGCACTACCGAAAAACAATCTCGGCGACTTCCGCAGTGTCCTGTTTGTAAAGCAGAAGTTTCTGATGCTACTCTAGTTCCACTCTATGGCAAAGGCAAAACTCGAGATTCGTTTGAAAGCAAGAATTCACAGCTTGGAATCGTCATTCCTCGCAGGCCTCATGGTCCGGCTTGCTTTGAGTCGCCAAGGCCAACTTCTCAGCCAATCTCTCACACAGTTATTCCTCAATTTAGGCAAGGAAATTCTTCTGATCAATCAAACGTTTACTGTGCTGAAATGACCGGAGTGTTCGGAGAAGTGGTTTATGCAAGAATGTCGGGTGCGATAACGAATCTATATGCATATCCAAATTCGTACCCTCTTGTGTGGAGCAGTAGCCCAAGGATTAGAAGGCATATTTTGCAGACTGATGAATCACTCAACAGAATCTGTATTTTTCTTTTCTGTTGCTTAATTATCTGTCTTCTTTTGTTCTGAGCCATAGACTTTTTCCATTTACTTTCTGACACATTGTAAAAATTTAGAGTGGAAGAACAGTTATATGTAATGCGGATTGAGTCTGATGTAGGTGTGGCTGAGTGTTGGTGGCGATTGTTGCCTTTTTCTCGCCCTTGTTCTGTAGTTGGTGTAAATAAGAATTTTGGTTATAGCCTTATTATGTGGGCTTCTATTACATTCTTGACTCTTGAATTGGTTTCCCCCCGCCCTTTAGAAACATAG

mRNA sequence

ATGGCATCTCAAAAGGGTTGTGTTACAACAAAGCATATGGAAATGGAACAGTACTTCGAGGAGGCCAGCATCCAGATCAATTCATTTGGAGAGAATAAGTCTTCTCTAGAAAATTGGAAATCTGTTTTGGATGCCATGGCTGAAACTCATTGTGATGCCTCTGGGCTATTTGACTGTAATATATGTTTAGAGACAGTGAAAGACCCTGTTGTTACGCTTTGTGGCCATCTCTTTTGTTGGCCTTGCATTTATAAATGGATTCATTTCCAGGACAGCACTACCGAAAAACAATCTCGGCGACTTCCGCAGTGTCCTGTTTGTAAAGCAGAAGTTTCTGATGCTACTCTAGTTCCACTCTATGGCAAAGGCAAAACTCGAGATTCGTTTGAAAGCAAGAATTCACAGCTTGGAATCGTCATTCCTCGCAGGCCTCATGGTCCGGCTTGCTTTGAGTCGCCAAGGCCAACTTCTCAGCCAATCTCTCACACAGTTATTCCTCAATTTAGGCAAGGAAATTCTTCTGATCAATCAAACGTTTACTGTGCTGAAATGACCGGAGTGTTCGGAGAAGTGGTTTATGCAAGAATGTCGGGTGCGATAACGAATCTATATGCATATCCAAATTCGTACCCTCTTGTGTGGAGCAGTAGCCCAAGGATTAGAAGGCATATTTTGCAGACTGATGAATCACTCAACAGAATCTGTGTGGCTGAGTGTTGGTGGCGATTGTTGCCTTTTTCTCGCCCTTGTTCTGTAGTTGGTGTAAATAAGAATTTTGGTTATAGCCTTATTATGTGGGCTTCTATTACATTCTTGACTCTTGAATTGGTTTCCCCCCGCCCTTTAGAAACATAG

Coding sequence (CDS)

ATGGCATCTCAAAAGGGTTGTGTTACAACAAAGCATATGGAAATGGAACAGTACTTCGAGGAGGCCAGCATCCAGATCAATTCATTTGGAGAGAATAAGTCTTCTCTAGAAAATTGGAAATCTGTTTTGGATGCCATGGCTGAAACTCATTGTGATGCCTCTGGGCTATTTGACTGTAATATATGTTTAGAGACAGTGAAAGACCCTGTTGTTACGCTTTGTGGCCATCTCTTTTGTTGGCCTTGCATTTATAAATGGATTCATTTCCAGGACAGCACTACCGAAAAACAATCTCGGCGACTTCCGCAGTGTCCTGTTTGTAAAGCAGAAGTTTCTGATGCTACTCTAGTTCCACTCTATGGCAAAGGCAAAACTCGAGATTCGTTTGAAAGCAAGAATTCACAGCTTGGAATCGTCATTCCTCGCAGGCCTCATGGTCCGGCTTGCTTTGAGTCGCCAAGGCCAACTTCTCAGCCAATCTCTCACACAGTTATTCCTCAATTTAGGCAAGGAAATTCTTCTGATCAATCAAACGTTTACTGTGCTGAAATGACCGGAGTGTTCGGAGAAGTGGTTTATGCAAGAATGTCGGGTGCGATAACGAATCTATATGCATATCCAAATTCGTACCCTCTTGTGTGGAGCAGTAGCCCAAGGATTAGAAGGCATATTTTGCAGACTGATGAATCACTCAACAGAATCTGTGTGGCTGAGTGTTGGTGGCGATTGTTGCCTTTTTCTCGCCCTTGTTCTGTAGTTGGTGTAAATAAGAATTTTGGTTATAGCCTTATTATGTGGGCTTCTATTACATTCTTGACTCTTGAATTGGTTTCCCCCCGCCCTTTAGAAACATAG

Protein sequence

MASQKGCVTTKHMEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESKNSQLGIVIPRRPHGPACFESPRPTSQPISHTVIPQFRQGNSSDQSNVYCAEMTGVFGEVVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICVAECWWRLLPFSRPCSVVGVNKNFGYSLIMWASITFLTLELVSPRPLET

Homology

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BLAST of Clc07G02980.2 vs. NCBI nr
Match: XP_038888270.1 (E3 ubiquitin-protein ligase RMA1H1 [Benincasa hispida])

HSP 1 Score: 444.5 bits (1142), Expect = 6.8e-121
Identity = 210/226 (92.92%), Postives = 218/226 (96.46%), Query Frame = 0


Query: 13  MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 72
           MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT
Sbjct: 1   MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 60

Query: 73  LCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESK 132
           LCGHLFCWPCIYKW+H+QDS+ EKQ+RRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESK
Sbjct: 61  LCGHLFCWPCIYKWLHYQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESK 120

Query: 133 NSQLGIVIPRRPHGPACFESPRPTSQPISHTVIPQFRQGN--SSDQSNVYCAEMTGVFGE 192
           N+QLGIV+PRRPHGPACFESPRPTS P SHTV PQ+RQGN  SSDQSNVY AEMTG FGE
Sbjct: 121 NTQLGIVVPRRPHGPACFESPRPTSHPTSHTV-PQYRQGNSDSSDQSNVYYAEMTGAFGE 180

Query: 193 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICV 237
           VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRIC+
Sbjct: 181 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICI 225

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BLAST of Clc07G02980.2 vs. NCBI nr
Match: XP_011658745.1 (E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >XP_031745015.1 E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KAE8645771.1 hypothetical protein Csa_020520 [Cucumis sativus])

HSP 1 Score: 438.7 bits (1127), Expect = 3.8e-119
Identity = 206/226 (91.15%), Postives = 216/226 (95.58%), Query Frame = 0


Query: 13  MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 72
           MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT
Sbjct: 1   MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 60

Query: 73  LCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESK 132
           LCGHLFCWPCIYKWIH+QDS+ EK++RRLPQCPVCKAEVSDATLVPLYGKG+T+D FESK
Sbjct: 61  LCGHLFCWPCIYKWIHYQDSSLEKKARRLPQCPVCKAEVSDATLVPLYGKGETQDPFESK 120

Query: 133 NSQLGIVIPRRPHGPACFESPRPTSQPISHTVIPQFRQGN--SSDQSNVYCAEMTGVFGE 192
           N QLGIV+PRRP GPACFESPRPTS P SHTV PQFR+GN  S+DQSNVY AEMTGVFGE
Sbjct: 121 NPQLGIVVPRRPQGPACFESPRPTSHPTSHTVGPQFREGNSDSADQSNVYYAEMTGVFGE 180

Query: 193 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICV 237
           VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRIC+
Sbjct: 181 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICI 226

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BLAST of Clc07G02980.2 vs. NCBI nr
Match: XP_008455327.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_008455328.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_008455329.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >KAA0031578.1 E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo var. makuwa] >TYK07030.1 E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo var. makuwa])

HSP 1 Score: 432.2 bits (1110), Expect = 3.5e-117
Identity = 203/226 (89.82%), Postives = 214/226 (94.69%), Query Frame = 0


Query: 13  MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 72
           MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT
Sbjct: 1   MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 60

Query: 73  LCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESK 132
           LCGHLFCWPCIYKWIHFQDS+ EKQ+RRLPQCPVCKAEVSDATLVPLYGKG+T++  ESK
Sbjct: 61  LCGHLFCWPCIYKWIHFQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGETQNPLESK 120

Query: 133 NSQLGIVIPRRPHGPACFESPRPTSQPISHTVIPQFRQG--NSSDQSNVYCAEMTGVFGE 192
           N QLGIV+PRRP GPACFESPRPTS P SHTV PQFR+G  +SSDQSNVY A++TG FGE
Sbjct: 121 NPQLGIVVPRRPQGPACFESPRPTSHPTSHTVGPQFREGSSDSSDQSNVYYAQVTGAFGE 180

Query: 193 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICV 237
           VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRIC+
Sbjct: 181 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICI 226

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BLAST of Clc07G02980.2 vs. NCBI nr
Match: KAG6589216.1 (E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 398.3 bits (1022), Expect = 5.6e-107
Identity = 189/233 (81.12%), Postives = 208/233 (89.27%), Query Frame = 0


Query: 5   KGCVTTKHMEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLE 64
           +G  TT++M+MEQY+EE    INSFGENKSS+ENWKS LDAMAET CD+SGLFDCNICLE
Sbjct: 35  EGFFTTEYMDMEQYYEE----INSFGENKSSVENWKSALDAMAETQCDSSGLFDCNICLE 94

Query: 65  TVKDPVVTLCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGK 124
           TVKDPVVTLCGHLFCWPCIYKW+HFQDS+TEKQ +RL QCPVCKAEVSDATLVPLYGKG+
Sbjct: 95  TVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGE 154

Query: 125 TRDSFESKNSQLGIVIPRRPHGPACFESPRPTSQPISHT-VIPQFRQGNSSDQSNVYCAE 184
           T+D FESKNSQLGIV+PRRP GPACFESPR TS P  H   + QF+QGN SDQSN+Y AE
Sbjct: 155 TQDPFESKNSQLGIVVPRRPQGPACFESPRATSHPHPHPHPVLQFQQGNLSDQSNIYYAE 214

Query: 185 MTGVFGEVVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICV 237
             GVFGE+VYARM GAITNLY+YPNSYPLVWSSSPRIRRHILQTDESLNRIC+
Sbjct: 215 --GVFGEMVYARMFGAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICI 261

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BLAST of Clc07G02980.2 vs. NCBI nr
Match: XP_022147841.1 (E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022147842.1 E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia])

HSP 1 Score: 394.0 bits (1011), Expect = 1.1e-105
Identity = 185/225 (82.22%), Postives = 202/225 (89.78%), Query Frame = 0


Query: 13  MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 72
           M+MEQYFEEAS+QIN+FGENKSSLENWKSVLDAMAETHCD SGLFDCNICLETVKDPVVT
Sbjct: 1   MDMEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVT 60

Query: 73  LCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESK 132
           LCGHLFCWPCIYKW+HFQDS+TEKQ ++  QCPVCKAEVSDATLVPLYGKG+T+D FESK
Sbjct: 61  LCGHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESK 120

Query: 133 NSQLGIVIPRRPHGPACFESPRPTSQPISHTVIPQFRQGNSSDQ-SNVYCAEMTGVFGEV 192
           NSQLG+V+PRRP GP C E+ RPTS        PQFR+GNSSDQ SN Y A+MTGVFGE+
Sbjct: 121 NSQLGVVVPRRPQGPGCSETSRPTSHS-----APQFRRGNSSDQSSNNYYAQMTGVFGEM 180

Query: 193 VYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICV 237
           +YARM GAITN YAYPNSYPLVWSSSPRIRRHIL TDESLNRIC+
Sbjct: 181 IYARMFGAITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICI 220

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BLAST of Clc07G02980.2 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.6e-48
Identity = 103/229 (44.98%), Postives = 137/229 (59.83%), Query Frame = 0


Query: 28  SFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWI 87
           +F ++ + L  WKS+ D + E   + SG FDCNICL+ V +PV+TLCGHL+CWPCIYKWI
Sbjct: 13  TFNKHDTPLGKWKSMNDEVEE---NISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWI 72

Query: 88  HFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGK-GKTRDSFESKNSQLGIVIPRRPHG 147
           +FQ  ++E   ++ PQCPVCKAEVS+ TL+PLYG+ G++    E K   LGIVIP+RP  
Sbjct: 73  YFQSVSSENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPS 132

Query: 148 PAC---FESPRPTSQPISHTVIPQFRQGNSSDQSNVYCAEMT----------------GV 207
           P C   F  P   S P        ++Q + + Q     + M+                 +
Sbjct: 133 PRCGGHFLLPTTDSNPSQLLQRRGYQQQSQTRQPAYQGSYMSSPMLSPGGATANMLQHSM 192

Query: 208 FGEVVYARMSG-AITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRIC 236
            GEV YAR+ G + T +Y YPNSY L  SSSPR+RR + Q D SL RIC
Sbjct: 193 IGEVAYARIFGNSSTTMYTYPNSYNLAISSSPRMRRQLSQADRSLGRIC 238

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BLAST of Clc07G02980.2 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.1e-39
Identity = 99/257 (38.52%), Postives = 140/257 (54.47%), Query Frame = 0


Query: 13  MEMEQYFEEASIQINSFGENKSSLENWK--SVLDAMAETHCDASGLFDCNICLETVKDPV 72
           M ++Q FE+A++    +GE     ++ K   +  ++     D S  FDCNICL++V++PV
Sbjct: 1   MALDQSFEDAALLGELYGEGAFCFKSKKPEPITVSVPSDDTDDSN-FDCNICLDSVQEPV 60

Query: 73  VTLCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFE 132
           VTLCGHLFCWPCI+KW+  Q  +T  + +R  QCPVCK++VS +TLVPLYG+G+     E
Sbjct: 61  VTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEE 120

Query: 133 SKNSQLGIVIPRRPHGPAC---------------------FESPRPTSQPISHTVIPQFR 192
            KNS     +P+RP GP                       F SP+    P+S  +     
Sbjct: 121 GKNS-----VPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQEGYYPVSGVM----- 180

Query: 193 QGNSSDQSNVYCAEMTGVFGEVVYARMSGA-ITNLYAYPNSYPLVWSSSPRIRRHILQTD 240
             NS   S V    M  V GE+V  R+ G  + + +AYP++Y L  +S PR+RR I+Q D
Sbjct: 181 SSNSLSYSAVLDPVMVMV-GEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQAD 240

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BLAST of Clc07G02980.2 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.3e-31
Identity = 76/205 (37.07%), Postives = 108/205 (52.68%), Query Frame = 0


Query: 54  SGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSD 113
           SG FDCNICL+T  DPVVTLCGHLFCWPCIYKW+H Q S+      +   CPVCK+ ++ 
Sbjct: 39  SGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQ-NNCPVCKSNITI 98

Query: 114 ATLVPLYGKGKTRDSF---ESKNSQLGIVIPRRPHGPACFESPRPTSQPIS-----HTVI 173
            +LVPLYG+G +  S      K   L   IPRRP  P+   +P  ++  ++      T+ 
Sbjct: 99  TSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNPITSASSLNPSLQHQTLS 158

Query: 174 PQFRQ----------GNSSDQSNV----YCAEMTGVFGEVVYARMSGAITNLYAYPNSYP 233
           P F              S+D +N     +   + G+FG++VY R+ G  TN  A P    
Sbjct: 159 PSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFGTFTNTIAQPYQ-- 218

Query: 234 LVWSSSPRIRRHILQTDESLNRICV 237
                     + ++Q ++SLNR+ +
Sbjct: 219 ---------SQRMMQREKSLNRVSI 230

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BLAST of Clc07G02980.2 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.9e-30
Identity = 77/194 (39.69%), Postives = 108/194 (55.67%), Query Frame = 0


Query: 49  THCDASGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWIHFQDSTTEK-----QSRRLPQ 108
           T  D+ G FDCNICL+ V+DPVVTLCGHLFCWPCI+KW +  +++ ++       R  P+
Sbjct: 11  TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPK 70

Query: 109 CPVCKAEVSDATLVPLYGKGKTRDSFESKNSQLGIVIPRRPHGPACFESPRPTSQPISHT 168
           CPVCK++VS+ATLVP+YG+G+       K  Q G  +P RP GP      R   Q     
Sbjct: 71  CPVCKSDVSEATLVPIYGRGQ-------KAPQSGSNVPSRPTGPV--YDLRGVGQ----- 130

Query: 169 VIPQFRQGNSSDQSNVYCA--EMTGVFGEVVYARMSG-AITNLYAYPNSYPLVWSSSPRI 228
                R G    Q  +Y     + GV  E+VY R+ G + +N+  Y +        + R 
Sbjct: 131 -----RLGEGESQRYMYRMPDPVMGVVCEMVYRRLFGESSSNMAPYRD-------MNVRS 178

Query: 229 RRHILQTDESLNRI 235
           RR  +Q +ESL+R+
Sbjct: 191 RRRAMQAEESLSRV 178

[Close]

BLAST of Clc07G02980.2 vs. ExPASy Swiss-Prot
Match: Q99942 (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-17
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 53  ASGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVS 112
           A   F+CNICLET ++ VV++CGHL+CWPC+++W+   ++  E+Q     +CPVCKA +S
Sbjct: 21  AGATFECNICLETAREAVVSVCGHLYCWPCLHQWL---ETRPERQ-----ECPVCKAGIS 80

Query: 113 DATLVPLYGKGKTRDSFESKNSQLGIVIPRRPHGPACFESPRPTSQPISHT 164
              +VPLYG+G        K     +  P RP G       R   QP   T
Sbjct: 81  REKVVPLYGRG------SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDT 117

[Close]

BLAST of Clc07G02980.2 vs. ExPASy TrEMBL
Match: A0A1S3C1W7 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103495518 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.7e-117
Identity = 203/226 (89.82%), Postives = 214/226 (94.69%), Query Frame = 0


Query: 13  MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 72
           MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT
Sbjct: 1   MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 60

Query: 73  LCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESK 132
           LCGHLFCWPCIYKWIHFQDS+ EKQ+RRLPQCPVCKAEVSDATLVPLYGKG+T++  ESK
Sbjct: 61  LCGHLFCWPCIYKWIHFQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGETQNPLESK 120

Query: 133 NSQLGIVIPRRPHGPACFESPRPTSQPISHTVIPQFRQG--NSSDQSNVYCAEMTGVFGE 192
           N QLGIV+PRRP GPACFESPRPTS P SHTV PQFR+G  +SSDQSNVY A++TG FGE
Sbjct: 121 NPQLGIVVPRRPQGPACFESPRPTSHPTSHTVGPQFREGSSDSSDQSNVYYAQVTGAFGE 180

Query: 193 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICV 237
           VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRIC+
Sbjct: 181 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICI 226

[Close]

BLAST of Clc07G02980.2 vs. ExPASy TrEMBL
Match: A0A5A7SLT9 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003470 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.7e-117
Identity = 203/226 (89.82%), Postives = 214/226 (94.69%), Query Frame = 0


Query: 13  MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 72
           MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT
Sbjct: 1   MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 60

Query: 73  LCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESK 132
           LCGHLFCWPCIYKWIHFQDS+ EKQ+RRLPQCPVCKAEVSDATLVPLYGKG+T++  ESK
Sbjct: 61  LCGHLFCWPCIYKWIHFQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGETQNPLESK 120

Query: 133 NSQLGIVIPRRPHGPACFESPRPTSQPISHTVIPQFRQG--NSSDQSNVYCAEMTGVFGE 192
           N QLGIV+PRRP GPACFESPRPTS P SHTV PQFR+G  +SSDQSNVY A++TG FGE
Sbjct: 121 NPQLGIVVPRRPQGPACFESPRPTSHPTSHTVGPQFREGSSDSSDQSNVYYAQVTGAFGE 180

Query: 193 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICV 237
           VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRIC+
Sbjct: 181 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICI 226

[Close]

BLAST of Clc07G02980.2 vs. ExPASy TrEMBL
Match: A0A0A0K717 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G047460 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 1.1e-108
Identity = 198/249 (79.52%), Postives = 208/249 (83.53%), Query Frame = 0


Query: 13  MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 72
           MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT
Sbjct: 1   MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 60

Query: 73  LCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESK 132
           LCGHLFCWPCIYKWIH+QDS+ EK++RRLPQCPVCKAEVSDATLVPLYGKG+T+D FESK
Sbjct: 61  LCGHLFCWPCIYKWIHYQDSSLEKKARRLPQCPVCKAEVSDATLVPLYGKGETQDPFESK 120

Query: 133 NSQLGIVIPRRPHGPACFESPRPTSQPISHTVIPQFRQGN--SSDQSNVYCAEMTGVFGE 192
           N QLGIV+PRRP GPACFESPRPTS P SHTV PQFR+GN  S+DQSNVY AEMTGVFGE
Sbjct: 121 NPQLGIVVPRRPQGPACFESPRPTSHPTSHTVGPQFREGNSDSADQSNVYYAEMTGVFGE 180

Query: 193 VVYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICVAECWWRLLPFSRPC 252
           VVYARMSGAITNLYAYPNSYPLVWS    I R +L                         
Sbjct: 181 VVYARMSGAITNLYAYPNSYPLVWSMLVAIGRPLLAL----------------------V 227

Query: 253 SVVGVNKNF 260
           SVVGVNKNF
Sbjct: 241 SVVGVNKNF 227

[Close]

BLAST of Clc07G02980.2 vs. ExPASy TrEMBL
Match: A0A6J1D3G6 (E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111016683 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 5.1e-106
Identity = 185/225 (82.22%), Postives = 202/225 (89.78%), Query Frame = 0


Query: 13  MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 72
           M+MEQYFEEAS+QIN+FGENKSSLENWKSVLDAMAETHCD SGLFDCNICLETVKDPVVT
Sbjct: 1   MDMEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVT 60

Query: 73  LCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESK 132
           LCGHLFCWPCIYKW+HFQDS+TEKQ ++  QCPVCKAEVSDATLVPLYGKG+T+D FESK
Sbjct: 61  LCGHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESK 120

Query: 133 NSQLGIVIPRRPHGPACFESPRPTSQPISHTVIPQFRQGNSSDQ-SNVYCAEMTGVFGEV 192
           NSQLG+V+PRRP GP C E+ RPTS        PQFR+GNSSDQ SN Y A+MTGVFGE+
Sbjct: 121 NSQLGVVVPRRPQGPGCSETSRPTSHS-----APQFRRGNSSDQSSNNYYAQMTGVFGEM 180

Query: 193 VYARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICV 237
           +YARM GAITN YAYPNSYPLVWSSSPRIRRHIL TDESLNRIC+
Sbjct: 181 IYARMFGAITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICI 220

[Close]

BLAST of Clc07G02980.2 vs. ExPASy TrEMBL
Match: A0A6J1JKZ9 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111486145 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 2.0e-105
Identity = 187/224 (83.48%), Postives = 201/224 (89.73%), Query Frame = 0


Query: 13  MEMEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVT 72
           M+MEQYFEE    INSFGENKSS+ENWKS LDAMAET CD+SGLFDCNICLETVKDPVVT
Sbjct: 1   MDMEQYFEE----INSFGENKSSVENWKSALDAMAETQCDSSGLFDCNICLETVKDPVVT 60

Query: 73  LCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESK 132
           LCGHLFCWPCIYKW+HFQDS+TEKQ +RL QCPVCKAEVSDATLVPLYGKG+T+D FESK
Sbjct: 61  LCGHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESK 120

Query: 133 NSQLGIVIPRRPHGPACFESPRPTSQPISHTVIPQFRQGNSSDQSNVYCAEMTGVFGEVV 192
           NSQLGIV+PRRP GPACFESPR TS P+      QF+QGN SDQSN+Y AE  GVFGE+V
Sbjct: 121 NSQLGIVVPRRPQGPACFESPRATSHPVL-----QFQQGNLSDQSNIYYAE--GVFGEMV 180

Query: 193 YARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICV 237
           YARM GAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRIC+
Sbjct: 181 YARMFGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICI 213

[Close]

BLAST of Clc07G02980.2 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 163.7 bits (413), Expect = 2.2e-40
Identity = 99/257 (38.52%), Postives = 140/257 (54.47%), Query Frame = 0


Query: 13  MEMEQYFEEASIQINSFGENKSSLENWK--SVLDAMAETHCDASGLFDCNICLETVKDPV 72
           M ++Q FE+A++    +GE     ++ K   +  ++     D S  FDCNICL++V++PV
Sbjct: 1   MALDQSFEDAALLGELYGEGAFCFKSKKPEPITVSVPSDDTDDSN-FDCNICLDSVQEPV 60

Query: 73  VTLCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFE 132
           VTLCGHLFCWPCI+KW+  Q  +T  + +R  QCPVCK++VS +TLVPLYG+G+     E
Sbjct: 61  VTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEE 120

Query: 133 SKNSQLGIVIPRRPHGPAC---------------------FESPRPTSQPISHTVIPQFR 192
            KNS     +P+RP GP                       F SP+    P+S  +     
Sbjct: 121 GKNS-----VPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQEGYYPVSGVM----- 180

Query: 193 QGNSSDQSNVYCAEMTGVFGEVVYARMSGA-ITNLYAYPNSYPLVWSSSPRIRRHILQTD 240
             NS   S V    M  V GE+V  R+ G  + + +AYP++Y L  +S PR+RR I+Q D
Sbjct: 181 SSNSLSYSAVLDPVMVMV-GEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQAD 240

[Close]

BLAST of Clc07G02980.2 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 163.7 bits (413), Expect = 2.2e-40
Identity = 99/257 (38.52%), Postives = 140/257 (54.47%), Query Frame = 0


Query: 13  MEMEQYFEEASIQINSFGENKSSLENWK--SVLDAMAETHCDASGLFDCNICLETVKDPV 72
           M ++Q FE+A++    +GE     ++ K   +  ++     D S  FDCNICL++V++PV
Sbjct: 1   MALDQSFEDAALLGELYGEGAFCFKSKKPEPITVSVPSDDTDDSN-FDCNICLDSVQEPV 60

Query: 73  VTLCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSDATLVPLYGKGKTRDSFE 132
           VTLCGHLFCWPCI+KW+  Q  +T  + +R  QCPVCK++VS +TLVPLYG+G+     E
Sbjct: 61  VTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEE 120

Query: 133 SKNSQLGIVIPRRPHGPAC---------------------FESPRPTSQPISHTVIPQFR 192
            KNS     +P+RP GP                       F SP+    P+S  +     
Sbjct: 121 GKNS-----VPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQEGYYPVSGVM----- 180

Query: 193 QGNSSDQSNVYCAEMTGVFGEVVYARMSGA-ITNLYAYPNSYPLVWSSSPRIRRHILQTD 240
             NS   S V    M  V GE+V  R+ G  + + +AYP++Y L  +S PR+RR I+Q D
Sbjct: 181 SSNSLSYSAVLDPVMVMV-GEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQAD 240

[Close]

BLAST of Clc07G02980.2 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-32
Identity = 76/205 (37.07%), Postives = 108/205 (52.68%), Query Frame = 0


Query: 54  SGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEVSD 113
           SG FDCNICL+T  DPVVTLCGHLFCWPCIYKW+H Q S+      +   CPVCK+ ++ 
Sbjct: 39  SGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQ-NNCPVCKSNITI 98

Query: 114 ATLVPLYGKGKTRDSF---ESKNSQLGIVIPRRPHGPACFESPRPTSQPIS-----HTVI 173
            +LVPLYG+G +  S      K   L   IPRRP  P+   +P  ++  ++      T+ 
Sbjct: 99  TSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNPITSASSLNPSLQHQTLS 158

Query: 174 PQFRQ----------GNSSDQSNV----YCAEMTGVFGEVVYARMSGAITNLYAYPNSYP 233
           P F              S+D +N     +   + G+FG++VY R+ G  TN  A P    
Sbjct: 159 PSFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFGTFTNTIAQPYQ-- 218

Query: 234 LVWSSSPRIRRHILQTDESLNRICV 237
                     + ++Q ++SLNR+ +
Sbjct: 219 ---------SQRMMQREKSLNRVSI 230

[Close]

BLAST of Clc07G02980.2 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 132.1 bits (331), Expect = 7.0e-31
Identity = 77/194 (39.69%), Postives = 108/194 (55.67%), Query Frame = 0


Query: 49  THCDASGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWIHFQDSTTEK-----QSRRLPQ 108
           T  D+ G FDCNICL+ V+DPVVTLCGHLFCWPCI+KW +  +++ ++       R  P+
Sbjct: 11  TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPK 70

Query: 109 CPVCKAEVSDATLVPLYGKGKTRDSFESKNSQLGIVIPRRPHGPACFESPRPTSQPISHT 168
           CPVCK++VS+ATLVP+YG+G+       K  Q G  +P RP GP      R   Q     
Sbjct: 71  CPVCKSDVSEATLVPIYGRGQ-------KAPQSGSNVPSRPTGPV--YDLRGVGQ----- 130

Query: 169 VIPQFRQGNSSDQSNVYCA--EMTGVFGEVVYARMSG-AITNLYAYPNSYPLVWSSSPRI 228
                R G    Q  +Y     + GV  E+VY R+ G + +N+  Y +        + R 
Sbjct: 131 -----RLGEGESQRYMYRMPDPVMGVVCEMVYRRLFGESSSNMAPYRD-------MNVRS 178

Query: 229 RRHILQTDESLNRI 235
           RR  +Q +ESL+R+
Sbjct: 191 RRRAMQAEESLSRV 178

[Close]

BLAST of Clc07G02980.2 vs. TAIR 10
Match: AT1G74990.1 (RING/U-box superfamily protein )

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-25
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 52  DASGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWIHFQDSTTEKQSRRLPQCPVCKAEV 111
           DAS  F CNICLE  ++P+VTLCGHLFCWPC+YKW+H+   +          CPVCKA V
Sbjct: 12  DASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSN--------HCPVCKALV 71

Query: 112 SDATLVPLYGKGKTRDSFESKNSQLGIVIPRRPHGPACFESPRPTSQPISH 163
            + TLVPLYG GK      SK +  G+ +P RP      E+ RP  +   H
Sbjct: 72  KEDTLVPLYGMGKPSSDPRSKLNS-GVTVPNRPAATRT-ETARPRLEQRHH 112

The following BLAST results are available for this feature:

BLAST of Clc07G02980.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888270.1	6.8e-121	92.92	E3 ubiquitin-protein ligase RMA1H1 [Benincasa hispida]	[more]
XP_011658745.1	3.8e-119	91.15	E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >XP_031745015.1 E3 ubiquiti...	[more]
XP_008455327.1	3.5e-117	89.82	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_008455328.1 PRE...	[more]
KAG6589216.1	5.6e-107	81.12	E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022147841.1	1.1e-105	82.22	E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022147842.1 E3...	[more]

BLAST of Clc07G02980.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R567	1.6e-48	44.98	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
O64425	3.1e-39	38.52	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
Q8GUK7	2.3e-31	37.07	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
P93030	9.9e-30	39.69	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
Q99942	1.9e-17	39.64	E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1	[more]

BLAST of Clc07G02980.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C1W7	1.7e-117	89.82	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103495518 PE=4 ...	[more]
A0A5A7SLT9	1.7e-117	89.82	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0K717	1.1e-108	79.52	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G047460 P...	[more]
A0A6J1D3G6	5.1e-106	82.22	E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1JKZ9	2.0e-105	83.48	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111486...	[more]

BLAST of Clc07G02980.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03510.1	2.2e-40	38.52	RING membrane-anchor 1	[more]
AT4G03510.2	2.2e-40	38.52	RING membrane-anchor 1	[more]
AT4G27470.1	1.7e-32	37.07	RING membrane-anchor 3	[more]
AT4G28270.1	7.0e-31	39.69	RING membrane-anchor 2	[more]
AT1G74990.1	4.4e-25	47.75	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 59..107 e-value: 2.5E-10 score: 50.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..108 score: 13.241681
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 8..127 e-value: 8.1E-18 score: 66.2
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 59..107 e-value: 2.7E-9 score: 36.7
None	No IPR available	PANTHER	PTHR12313:SF59	E3 UBIQUITIN-PROTEIN LIGASE RMA1	coord: 15..238
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 57..109 e-value: 9.38959E-24 score: 88.9003
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 58..113
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 15..238
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 74..83

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc07G02980	Clc07G02980	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc07G02980.2-exon	Clc07G02980.2-exon-ClcChr07:2861943..2861945	exon
Clc07G02980.2-exon	Clc07G02980.2-exon-ClcChr07:2862132..2862831	exon
Clc07G02980.2-exon	Clc07G02980.2-exon-ClcChr07:2862970..2863121	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc07G02980.2-cds	Clc07G02980.2-cds-ClcChr07:2861943..2861945	CDS
Clc07G02980.2-cds	Clc07G02980.2-cds-ClcChr07:2862132..2862831	CDS
Clc07G02980.2-cds	Clc07G02980.2-cds-ClcChr07:2862970..2863121	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc07G02980.2	Clc07G02980.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity