Clc05G22040.1 (mRNA) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAGAAAGAAAAAATAAATAAATAAATAAAATTAAAGCCTATAAATATAAAGCAACCTTTAATTTTTGGTGTCTAAATATTTGTCACCTTGACCGAACAATTCTGACGTTTGAGGAATGTAAAGCCTAAAGTAAGAGAAAGGAAAATGAGGAAAACCAAATAAATATTAGCACGTGGCAATTAAGGTTGTATTATATATAAACACAACACGAGAGAGAGAGATGGCATAAAACAGAAGCAAATTAGAAAGAAAAAAGGGATTGGAGTGAGATGGCGAGGAAAAGCAAAACGTACCATCCCAGGGCGAAGCTATCAAGAGAGCAGTTACTTGTAATCTTCAGAAACCACGACAGCGACAAGGACGGCCGCCTCAGCACCACCGAACTCACCGAAGCCTTCCGATATATCGGCGCCTTTCTCCCGTCCTACAGAGCTCGCCACGCTCTTTTTCATTCCGATTCCGACAGAGATGGATTTATCGGAGAGAAGGATTTCGAGTTGCTCCTCAATTATGCCGAGCAACGCCAATATACCATCATTTGAATTTTTACGTTTTTTCTCTTCTTTTCTTTTCTGTTTCAACTATTTAATGATCTCGACTATAATCTGTTGAAATGT AAAGAAAGAAAAAATAAATAAATAAATAAAATTAAAGCCTATAAATATAAAGCAACCTTTAATTTTTGGTGTCTAAATATTTGTCACCTTGACCGAACAATTCTGACGTTTGAGGAATGTAAAGCCTAAAGTAAGAGAAAGGAAAATGAGGAAAACCAAATAAATATTAGCACGTGGCAATTAAGGTTGTATTATATATAAACACAACACGAGAGAGAGAGATGGCATAAAACAGAAGCAAATTAGAAAGAAAAAAGGGATTGGAGTGAGATGGCGAGGAAAAGCAAAACGTACCATCCCAGGGCGAAGCTATCAAGAGAGCAGTTACTTGTAATCTTCAGAAACCACGACAGCGACAAGGACGGCCGCCTCAGCACCACCGAACTCACCGAAGCCTTCCGATATATCGGCGCCTTTCTCCCGTCCTACAGAGCTCGCCACGCTCTTTTTCATTCCGATTCCGACAGAGATGGATTTATCGGAGAGAAGGATTTCGAGTTGCTCCTCAATTATGCCGAGCAACGCCAATATACCATCATTTGAATTTTTACGTTTTTTCTCTTCTTTTCTTTTCTGTTTCAACTATTTAATGATCTCGACTATAATCTGTTGAAATGT ATGGCGAGGAAAAGCAAAACGTACCATCCCAGGGCGAAGCTATCAAGAGAGCAGTTACTTGTAATCTTCAGAAACCACGACAGCGACAAGGACGGCCGCCTCAGCACCACCGAACTCACCGAAGCCTTCCGATATATCGGCGCCTTTCTCCCGTCCTACAGAGCTCGCCACGCTCTTTTTCATTCCGATTCCGACAGAGATGGATTTATCGGAGAGAAGGATTTCGAGTTGCTCCTCAATTATGCCGAGCAACGCCAATATACCATCATTTGA MARKSKTYHPRAKLSREQLLVIFRNHDSDKDGRLSTTELTEAFRYIGAFLPSYRARHALFHSDSDRDGFIGEKDFELLLNYAEQRQYTII Homology
BLAST of Clc05G22040.1 vs. NCBI nr
Match: KAA0064376.1 (putative calcium-binding protein CML27 [Cucumis melo var. makuwa] >TYK20211.1 putative calcium-binding protein CML27 [Cucumis melo var. makuwa]) HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39 Identity = 81/90 (90.00%), Postives = 88/90 (97.78%), Query Frame = 0
BLAST of Clc05G22040.1 vs. NCBI nr
Match: KGN55185.1 (hypothetical protein Csa_012915 [Cucumis sativus]) HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38 Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0
BLAST of Clc05G22040.1 vs. NCBI nr
Match: KAG7024248.1 (Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34 Identity = 76/90 (84.44%), Postives = 81/90 (90.00%), Query Frame = 0
BLAST of Clc05G22040.1 vs. NCBI nr
Match: KAG6591370.1 (Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 154.1 bits (388), Expect = 5.9e-34 Identity = 75/88 (85.23%), Postives = 79/88 (89.77%), Query Frame = 0
BLAST of Clc05G22040.1 vs. NCBI nr
Match: KAG6608481.1 (Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037808.1 putative calcium-binding protein CML41, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 145.6 bits (366), Expect = 2.1e-31 Identity = 71/90 (78.89%), Postives = 77/90 (85.56%), Query Frame = 0
BLAST of Clc05G22040.1 vs. ExPASy Swiss-Prot
Match: Q39419 (Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 2.0e-05 Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 0
BLAST of Clc05G22040.1 vs. ExPASy Swiss-Prot
Match: Q8L3R2 (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 PE=2 SV=2) HSP 1 Score: 49.3 bits (116), Expect = 2.7e-05 Identity = 23/61 (37.70%), Postives = 37/61 (60.66%), Query Frame = 0
BLAST of Clc05G22040.1 vs. ExPASy TrEMBL
Match: A0A5A7VDB9 (Putative calcium-binding protein CML27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003480 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39 Identity = 81/90 (90.00%), Postives = 88/90 (97.78%), Query Frame = 0
BLAST of Clc05G22040.1 vs. ExPASy TrEMBL
Match: A0A0A0KZR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639730 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 8.5e-39 Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0
BLAST of Clc05G22040.1 vs. ExPASy TrEMBL
Match: A0A5C7H618 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021566 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 5.2e-12 Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 0
BLAST of Clc05G22040.1 vs. ExPASy TrEMBL
Match: A0A5N6RQV2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018544 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 5.2e-12 Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 0
BLAST of Clc05G22040.1 vs. ExPASy TrEMBL
Match: A5AWP8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023174 PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 8.9e-12 Identity = 37/84 (44.05%), Postives = 57/84 (67.86%), Query Frame = 0
BLAST of Clc05G22040.1 vs. TAIR 10
Match: AT3G50770.1 (calmodulin-like 41 ) HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06 Identity = 23/61 (37.70%), Postives = 37/61 (60.66%), Query Frame = 0
BLAST of Clc05G22040.1 vs. TAIR 10
Match: AT1G76640.1 (Calcium-binding EF-hand family protein ) HSP 1 Score: 42.7 bits (99), Expect = 1.8e-04 Identity = 21/61 (34.43%), Postives = 35/61 (57.38%), Query Frame = 0
BLAST of Clc05G22040.1 vs. TAIR 10
Match: AT1G76650.1 (calmodulin-like 38 ) HSP 1 Score: 42.4 bits (98), Expect = 2.3e-04 Identity = 21/69 (30.43%), Postives = 39/69 (56.52%), Query Frame = 0
BLAST of Clc05G22040.1 vs. TAIR 10
Match: AT1G76650.3 (calmodulin-like 38 ) HSP 1 Score: 42.4 bits (98), Expect = 2.3e-04 Identity = 21/69 (30.43%), Postives = 39/69 (56.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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