Clc05G09420.2 (mRNA) Watermelon (cordophanus) v2

Overview
NameClc05G09420.2
TypemRNA
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S20
LocationClcChr05: 7484288 .. 7494663 (-)
Sequence length1444
RNA-Seq ExpressionClc05G09420.2
SyntenyClc05G09420.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCGGGAACAACGCGCAGCTAATGGTGGTGGCATACGAAAGGTCTGCTGACCACAAGATCCTAGCACTGGCGGCGGCTGCCGGGCAAACCGGCGGTCGGGTTGTCTGCATAATTGGACGGCAAGAAGATCTTCATGTATCACAAGCAATTATCGGGGTGGAATCATATGATCACCGAATAGAGTTCGTGGTGGGAGAAGCCGAGAAGCTTATAAAAACTCAATACAGAGAAGTAGATTTTGTTCTGATAGACTGCAATCTGGAGGGCCACGTGGCGGTGCTGGAGGCCGTTAGATCGAGAAGGGACAACCAAAGCGCCACCGTGGTGGTGGGTTTTAACGCGATGAGCAAAAGATGTGGAGGAGGAGCAGGATGGTCGGGGGGATCGACCACGCATCTTTTGCCAATCGGAAAAGGGTTGATGGTGACGAAAGTGGCGGCGGAGGTGTCAAATTCCGGCGATTATGGGAGGAGGATGAGGAGGAGGAGCCAAAGCCAGTGGGTTGTGAAGGTGGATAAATGCACCGGAGAAGAACATGTTTTTAGGGTTAGGCTTCCACAGGGGAAAGTCATTCAAGCCTGATTTTTTTTTTTCTCTTTTTGGAAGTATTAGGGTTTATTGAGAGAAGTAGTAAAATTCTTCAAATGTATATATAGCAACTGGGGGAGAATTTATATTAGAAGTTAACTAATTTTTCTTTTAATTATAATCAATATAATTATTAAGTCGATTTGTATACTATGTTCTTGAAAATTGTTTATTCTATTTAATATCTCTGAAGAAGTCTGAGGTATTTTTTTTCAAAAAAAAAAATAAATGAATATGATTTTAGTGTCATTTTAGTGTGTATCCAATATAATTATTAAGTCGATTTGTATACCATGTTTGAGCTTGAATGGTACAAACTCAAGACTGAAATATCCGACCCAATACCCATATGCCTAGGTGAATCACAAGTTCGAGCCATAAGTCAATTGACTTATACATCACTAAAACTCAAGATAGGGTTGGCAACGAGAGCGGGCGAAGCAGATGTGGTTCTCCATCCTCGCTCCCGTGGGGGGAATTTATCCCATCACCGCCACGGTAGGGAGGGATGTGGGCGGGGATTCTCCAACAACCACGCGCGCACACACACACACACATATATATATAAACTGGTGGTCATGAATAAATCAGGGCAGGGCGGGGATACCCTCCCCATCCTTGGTCGGCTACCCGACGAATGTCAAACTAGGGATTCCCGACCCAATCGAATTAAGGCTCGCGAGTTTTTCTACCAACCCTAACTCAAGAAGAATGAAATAAAATTTAATATCTACCAAGCTCTTACTGCAACCAAATGCCTTTAACTCATTGTTGAGCACATACAAATTGAGGTGAGATTTTTTATACGTTCAGATTTGCTCATCGACTACTACCCTTCAAAAAAACATCATATATTATAATTTTGTGGAATAAGTTGATCCTAAAGTGATAGAGTGAGCATGAGTCAATTATAAAGTGCTAAAGTGAGCATATAGCTAACTGACATAGAACTTGTATTTCAATTTTTCACCCTACAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTGATTATAAAGTTTGATGAGGTAGTTGTAAATATAGTAATGAGGTCGAAATTATTCACAAATATAGCACAATGCAATTTTTTTTTTTTTTTTTTTATAGATATAGCAAAATTTAGATTATGTTTTAAAAGTAGTGATATTCTATATCAATAATAGAAGTCAATTAGTGATAGACTATATCACTAGTAGGAGTTTATCAATGGTAAATTTTATTATATTTATAATTTTTAAAATATAATTATCATTTTTAAAAGTGTTATTCAACACAACTACTTAAATTTAAATGTGTTTGAAGACTTGTCTAGACGTGACTCAAAAACTATAGCTAGGATAACGGGACAACCATTATAAGATTTAAGGAATCACATGGACATTGTTTTTTGGGTTCCACTCCAAGGCCCACTTTAGACGCTAAATGGTCGGCGTGATTTTTAACTATTGTATGGCTCCCGTAATTATTGAAAAAAAAAAAAAAAAAAAAAAAGGGCCATATGATTTGTACTGTACCAATAATCTTGTGATAAAGAGGATAGGTATATATTCCCACCTCATATATATTGTAACAAAAAAAAAAAAATCATTAATCTTCATCCAGATTCTATCCTTATTTATTCTTAGTTTCTTAATACAAATTTTAATTGAAAAATTATTTTAAATGATAAAATTGTTAAAAATATTTACAAATGATAGCAAAATATCACAGTCTATTTGCGATAGACTATAAATTATCTGTGTCTATCATGACACAAATAATAGTCTATCGCAGATAGACAATAAGATTTTACTATATTTGTAAATATTTTGATTCATTTTCCTATATTTAAAAACAACATTTTTTTTATTTCAACTATATTAATAGAGATTCAAACTTTACACATTTGAGCTTATTTATATACAGATCTGCTCACATTTTAGCTGGTTTCTTAATAAGAGATTTGCAATCTTTACACATTTTGGAAACTATACTTATATCCTTTATAAAGTCTAGGATTCTCTCTACCCTTTTATTCATTCAAAGTGGATGATATTTTTGATAAGAGTACCTAAAATATTATAACTAATTATATTGCCGAAGGAGCTTTCGAGTGGAAAATCTTCCCTTTCCCCGTTGAGTATCTGTGTGTGCTTTTCTTTTTAATCAAGATCACCTACCCATTTTAAGGAATAGATTTATACTTTTAAGATAAAATAGAATCCCCCGAAAATCTAATAGACAAGAGTCACAAGACATATAATGCTGTGGTGTTTCTACTTGCGAAGACATGATCCTTATGCATCCATGAAGTCGATGTGTCATAGAGATATTTCTTCAAAAGTATAAAAATTATTGAGTTTTAGTAATTATGGATGAAAAATGACGTGCCCTATATATTTTTCTCTACAACATACTCTATTATTAATCCTATGTTATCTAATATGGTATTAGGCCCGTAAAATCTAAATATAGATATTTGAAATAACTAGCTTTTACTAATTGAGTTTGAAAAATAACTATAATTTAGTTTTTTTTTTCTTTTTTTTCTTTTTTTTTTTTTTTAAAGAAAAGACTAAAAACTTTTTTTTTAAGGAGATTTGTCGTGACAAAAATATCCCAACTAAGATTATGATATTTTAAATATAAAATAACTAACGTAAACAAAATTACTAGGTTAGTCCAAAACGTAATTAAAATATAACAACTATTAATTTCGCCCCATACCATATCCCCAAACTAATGGACATTCATGTTTTATATATACACAATTAAAATGATACTAATATGGAATGAGTGTGTGTTACCAAGTATATAAAGGGATCCTATGGGACTTAGCTTGTAAAAGTGTGTTGTATATATGCACGTTTATGTATAAATGTGTATACATGTATCTATAATATATTAAAAAACAACCATCTTTGTAAAACTTTTTTAGTTATCAATTTTAAAATTTACACAATATGCCACTTGCAATTAATTCTACCAATAATTAATAAATAGTGGATTGATTGACAATAATAGTAAATAGTGAGAATACAAAAAGGTTCTCTACAACTTAAGACTTTATTTTCATTTAATTATAAGCAATTATTGAATTTCAAAAAGTTTAGAAAGTCAAAAATCTTGTAACTTTTTATCATCTACTACTATAAAAATAACATTTTTTTCATCATTCTTTCAACACTTTCACCAAATATTTAGGTAAGATTCTACTTTCTTTCTCTTCTTTTTTTTTTTATTTTCGTTATTTCAACTAATTGTTATCATACACATATCTAACCAATGAGAATAGGTGGATGTAAGTTCTAATTGTTTGTGAAGCTTTTGCATTTGCTCACCATCAAAAGCCACTAAACTTTTAAAAAGATGTTAAAGTAATTGAACTTGCATCTTTTGTTGAAAGATTCAATGACTAGCCTTATTATATTCTCATATCAAATGTTTTAAAAAGGTACTCCCATGTGGATTTTGGACATGAATCATGCTAATATTTTTAAAGCATTAAGCCAAAGTGGGGGCTCTTGTCCCACCTTATATGAAATTTGATTTTATGAGTGTTATTTTCTTTAAATAAAATATAAAAAGAAGAAGCAATGTTCACAATGTCTCTTCAATCTCAAAAGAATAGTTAACTCAATAATTACAATGTTATTTTAATCTTTATATAAAAAAAATTACAATCTTAACTAAATTTTCATAGATTATTTCATCTCATTTCAAAATTTAAATATATAAAATATCTCATTTATAAAACGTTATAATTAATTGTCAACATGGGCACAGTTGAACTAACATAATTTTTTTTCAATGATAAATAGTTAACTCAATAATTATTACATATTTCTTTAAAAAAAATAATAATTATTACATGTTTAATCATATTTAATGTAAAAAATATCAAAAGTCTTGTATTCTCATAAGTTTTGCTTCTTCAATTATGTGTAATTTAAACCATTTAAAATCTTAGAATATGAATAGTTTTGTTTTTTTTGTTATATTTTTAATTACATAAGTTAATTTAATAGTTATTGCACCCTTAATCATTTTTAATGATAAAAAAATATCAAAAGTCTTGTAATCTCATAAGTTTTGTTTTGTTTAATACTAAATCTCACAAGTTTTACTTCTTCATTTACGTGTAATTTAAATTATTTAAAATTAAAAGTGTTAGAATTAGGATATGAAAAGTTTTCATTTTATTTATGTAAAATAATACAACAAATTATTACATTTATAGTTGGGATGTTTTCAAAAATAAAAAAAAAAATTGTTCAAAATTATTACAAATATAGCAAAATTTTACTTTTTAGACTACGATAGACATCTATCACTCTACCAGATAGATATGGATAGATGTCTATCTGGGTCTATCGCTGTCTATCACAATAGAAAGTGAAATTTTGTTATATTTGTAAATAATTTGATATTTTTTTCTATTTATAATAATTTGCCTTTATAGTTCTATATAATATAATATCTTTAATTTATAAATCTATAAATCTATAATATTTATAATTTATATAAAAACCATAATATTTTATATCTTTTTGACCAATTGTCCTCTGCATTTTAATTTTATTATTATAGTGCCAATTGCAATCTCATAAGTTTTAAATGCATGGTTTATTATTAAATTTGAAATGAGCCAATTTTTTCATCAAAAAAAGAAAAATGATGTACTTCATATTTAGGTTAAGATTTTAACTTATTGCATTAATTTTAAAAGATTATATGAGAAACATGGGGATGTGATGCGATTATTAAAAAGTATACGACTACCAATTTTTATGTTACTAAAATAAAATATTTTGAATTTTGTTTTCAATAATGTTTATTAGAAATATAATTGCAACTTTAAACCCAATTTTCATAAATATCAAACATAAGCGCCAAAAGTAGTCATTGATTGTATGATTTGTATTTAGTTCAAATGAAATTAATTCATATTTAATTTGAGATTTAATTAATTGTATCAATTTATTAAATTTAAAAGTAAGATTTAAATAATTGTATCGTATCTATTATAATTATTCTTTTAGTCACGTTATATTTACCTGAATGTGAGAGAAATGTAAATAAAAAGTTTGAGCAATTAATAATTTATATGTTATTGCAATAAAAGAAAATACATGTTAAACATTTTAGTTTTTAATTGTATGCATTCATAAAAAGTTCTAAATATAAATTTATGAGTGCTATTGAAAATATTCAAACAACTTCAACTTTGATTCATTCCGTCAATGATTCTTGGATTATGTAATTTAACAAATTATCAACTTTGTATGATGTTATATCAAGTTTCTCAATTGTACATCTATTACTCCATCACCCTCACTATTTAAACATTTTTGGGAGATATTGATCCACATCTCAATCCATGCAGTTTAATTTTGAGTTAGCAAATTGTCTTCAACAAGTACCATCAATCACATGTCAAATGAGATATGGACATAAATTGTAAGTTAATGACCAATAGATATGTAGTTGAATTTTTTCAATATAAATATAAAATTACATAGTGTAAATTAATTAACCAAACATAACCCACCGATTGCACATAGTAAATCACTAGTTTACATAAATGTGGGTATATGAAGCATACTAACAAATTAGAATAAATAAAATAAAATAAAAATTAAAAAAACCCAACTATCGAGAAAGGGTAAATAAAAAGGTTGAAAATTGATAATTCCCCCTAATTATCTCCAACCTTGCAAACTAAAGATTTATCTTATTCACGTCTTTAACGAAGAATATATGCAAAAATACGTGTAAACTTATAATAATATTCAATAAAACTAGATGTTTGTTTCTAATCCCTATATGTACGTGTATATAGGTAACTTATAGGACCTATATTTGCCTTAAATATTTAAAATTAAAATATAAAAAAAGCCTATTAAATCCTAAACCCTATTAATAGAGATGTCCATTTAATTCGTAGGGCTAGAGTTTCTCGAAGACCCGCCCAAACGAGGGGGAGAATCCCTGAATACATAGGGAATGGGGGAGGGAGAGGGGAATTCTTTTTCCCATTTACAAATTGGGGATGGGGCTGGAGAATATATTCCCCCATCCCCGACCCCGCCCCACCTCAAATTTTATTTATTTATAATTATAATATTATATATATATATACACATGTGAAGACTTTGTTAGGATGATTATGAATGTTATATAATTATGTAAGTTTAAAACTTTATTTACTTTAATTGCTTAGATGTTGTAATATTTAAGAAATGATGTTCTAATTGCTAAATTATATTTTTTATAAATCATGAGAATTTAGCATTTTAATTATATCTTTTTCAAATTGCATATGTTTTTATTAGGAAAATTGATAATGTTTTATTTGAATGAAAATTGTAAAGGAAATGCTTCAATTAAAGAATTGTTAAAAAAAATATTTAATTGAACTAAAAAAATGGTTAAATTTCTCTAAAATAAAAATTTTTTAAAAATAAAGGTGGGGAGTCCGATCCCCACCCTTTCCCCGAGGGGGAATTCGCAGAGACGGGGAATGGAATGGGGGACGGGGACAGGGTCGTGGGGACGGGGAATGAAATGGCGGCAGGGATGGGATGGGGATGGGGAAGGGGAAGGCTTCCCCATCCCCACTCTGCCCCGTGGACATCTCTACCTATTAAAAAAGACGTTTTTAGTAATATGACGTTTTGCAATATACAATAATTAAAGCTAGTATATACCTACCTGAATAGCTTTAGAAGCCACAAGACTTTTCCATTTGAAATCCTTCTTCTTAACCTAAAACCCGAAAGAGAGAATCTCCAAATTTAGTCGATATATATTTTTAGAAAACAAAATTATATATATTATTCATATCAAAACATAAATCTTTTTCATTCAACGTAAACAAAAAATCATAATTCAATTAGATGATCTAACTATAAATAATCAAGTATATATTAGGGTATAAATGAAAAAAACTATCTCAAACACTTCCCCTAAAATTATGTAAGACTCATCTTTGCAACATGCCCCGAAATTGGATAATTTTTTATGCTTGGGTGTCTTTGTAGGTATTCTTTACAATTTCTCCTTAATATAGATTTTTTCTAGTTTGAAATAACTCTAGCTCAATGGTGATTAACATATCTATCTCTGACTCTTGAGATCAGACTCAATTCTCATCTTTGGAAATTGTTGTACACATAAATAGGGTTGGCAACGGAGTCGGGCAAAGGAGGGGAGGATTCTCCATTCCCATCCCCGCGGGATATTTCCCCCATCCTCGCCCCTGCCAATTGAAGCTAGGGATTCTTTGTTGGGGAAATGGGTCCCCATGGGAGCCATCACGGTAGTTGATATCCGGTTCGATCGGGGACCCGATCATGATACCTGGTTTGACCCCCATCCCTGGTCAAATCGGGTCCTGCATGAATTTTTGCCAACTCTACATAGAAACTTAACGTTATGATCTTCGAATAAGTTTATCGATTGTCGTTGATATTTTGTTTAACTCAAATGATCCTAACGAATATTTCACATTCATGCTTATAAAGTTGCATAAGCTCAGTACACTTAGAAGCTACTTACGGTAATATAAAACATTGAAATAGTTTACGAAATCAGCCTATTAGCTAGATGTGAAGTAATAAGTTATTGTAGGGAAATGCCATAAATTAAATATAGGGCAAATTGTAAATAGCACATCTAAAGTATGGTAATAGTTACAAATATATCATTAAACTTTCAATTGTAAAAATTATGGCCTCAAACTTATACAAGTGTTAAAAATTGGACCCTCAAACTTACATAAATATAAAAATTATAACAATTATATAAGTTTAAGGATTCAGTTTTTTTTCTTTTTTCTCATTTGGAGGTTCAGTTTTAACCTATTTAGAAGTTTGAGAGTCCAATATATACAATTGAAAATTTAAGGGTGTAATTGCAAATACCACCATAGTAATTTTTGCAATTTGCTGTTTGATTATAATAAAAGAGCATTTGGGCTAAAGAAAAAAAAGGTCCAAGTGTAATAGGACTTAGAAAATACGGCTGATCAAACCCGACCGGCCCAGCCCACTTTCAGAAAATAAGAACCCTAATCGCTCCAGAATCATATAAATTGTAACATCGTCACTCTCGTTCTCCTTCTTTCAGAGAGAGGCAGCTGGATACTCAATTGTAGAGATCTCCTTCACAACCGCCGTCCCAGGTTTCTTTTTTGAATTTGGCAGTTCCTTTTTTTTTTTTTTTTTTTCTTCCGCTCTTATCTACGTTGCTCATTGTATTGAGGAATTTTTAAGACCATAATCTGTTCTTCATTATAATGAGATTTCTGAATGTATATAAGTTATTGAACTAAGTTAGCTATTTTCATCTCTAATTTTTCAATTCCTGCGGTTGATGTCTTTTCTCCAATATTGAAAACATTGTTGGGTTGGTTCAACAGATTCGTTTTGGACATTCAGGATAACCGGAAGTATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACGCTCTCCTCCAAAAATGTCAAGAACCTCGAGAAGGGTATGTTTTTTTTTCTATGCTGGATTATTATTGTTGTTTTTTTTCTTGTGTAATTTAGTGAATATGACACTCTAGTGAGGTTGCATCTTCAATTCTTTAGTTCGATAACTTTCATGTGTGTGAGTAGGATGATTGCTTGTAGTCATGGATAAGTTATAAGATTGTCGAATATAATGGATGAAGGGTCCCTATTATGTGTCCACTGACGAACATTAGTCTAGGAATTGTTAAATTACTTCTTGATTCTAGTCTCTTTTTCTTGATATTGCTGCATTGTTAAATTCCCACCCCATTGGTTTGAAGTGCATAGTTGGCTTAACGTGTAGTTGGGTTTTTCTTTATCAATGTTGTCCCATTTAAGGCGCCTTTGCCAATTAGTTTGATATCATTTTAAATCAATAGTGTGCGCCGACTTGGTCCGCGGTGCAAAGGACAAGAGATTGAGGGTGAAGGGACCAGTAAGAATGCCCACCAAAGTTCTTCACATTACAACCAGGAAATCTCCATGTGGTGAAGGTACTTTGTTTTCCACTTACCTATGATCTTCTGAGTAAGGTTCCCTTTTTTTGTTTGGAAAAATGGATTTAGACTAATATCTGTATCGCTTCATGGTGATCCATCACATTTGGAAATCACTGCTTATGAACTAATTTCAGTATTTACTATTAATTTTGGAAAGAGGGGGGCATCTTTTTATTTTTATATATATGAATCCAATGTGATAACTCATCAAAATGTTTAATCCGTGTGTTGGTGATTACAACTTCGAATGCATCCCAGTTCTTATTGAAATCATTGATTCATTCGTTTTTTATTGTAGGTACCAACACATGGGACAGATTTGAACTCCGTGTCCACAAGCGAGTTATCGACCTTTTCAGCTCTGCCGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGTGTGGAAGTTGAGGTCACCATTGCCGATCAATGAGTGCACTCTTTTCATGTTTTGCCTATTTTTAGTCTTATTAGACAGTTGTTACTTTTTGTGTTTGGAACATACCTGTCGGGTCTGTGGGGTTTAAATGCAATAGTTCCCATTATAAGTTGAAATTAACGACATTGAGAGTTTTCAATTCCTGGCAATATTTTCTTGCGTTAGAACTAATGTTAATTTCATTATATGCAGATTTTGTATCAATAGTTGTGTGAACTCTATCCTAATTGAAATTTATATGTGCAGTGCTTCAAAAATCCAG

mRNA sequence

ATGGCAGCCGGGAACAACGCGCAGCTAATGGTGGTGGCATACGAAAGGTCTGCTGACCACAAGATCCTAGCACTGGCGGCGGCTGCCGGGCAAACCGGCGGTCGGGTTGTCTGCATAATTGGACGGCAAGAAGATCTTCATGTATCACAAGCAATTATCGGGGTGGAATCATATGATCACCGAATAGAGTTCGTGGTGGGAGAAGCCGAGAAGCTTATAAAAACTCAATACAGAGAAGTAGATTTTGTTCTGATAGACTGCAATCTGGAGGGCCACGTGGCGGTGCTGGAGGCCGTTAGATCGAGAAGGGACAACCAAAGCGCCACCGTGGTGGTGGGTTTTAACGCGATGAGCAAAAGATGTGGAGGAGGAGCAGGATGGTCGGGGGGATCGACCACGCATCTTTTGCCAATCGGAAAAGGGTTGATGGTGACGAAAGTGGCGGCGGAGGTGTCAAATTCCGGCGATTATGGGAGGAGGATGAGGAGGAGGAGCCAAAGCCAGTGGGTTGTGAAGGTGGATAAATGCACCGGAGAAGAACATGTTTTTAGGTCACGTTATATTTACCTGAATAGTTTCTCGAAGACCCGCCCAAACGAGGGGGAGAATCCCTATGATCTAACTATAAATAATCAAGTATATATTAGGAGAGAGGCAGCTGGATACTCAATTGTAGAGATCTCCTTCACAACCGCCGTCCCAGGTTTCTTTTTTGAATTTGGCAGTTCCTTTTTTTTTTTTTTTTTTTCTTCCGCTCTTATCTACGTTGCTCATTATTCGTTTTGGACATTCAGGATAACCGGAAGTATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACGCTCTCCTCCAAAAATGTCAAGAACCTCGAGAAGGTGTGCGCCGACTTGGTCCGCGGTGCAAAGGACAAGAGATTGAGGGTGAAGGGACCAGTAAGAATGCCCACCAAAGTTCTTCACATTACAACCAGGAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTCCGTGTCCACAAGCGAGTTATCGACCTTTTCAGCTCTGCCGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGTGTGGAAGTTGAGGTCACCATTGCCGATCAATGAGTGCACTCTTTTCATGTTTTGCCTATTTTTAGTCTTATTAGACAGTTGTTACTTTTTGTGTTTGGAACATACCTGTCGGGTCTGTGGGGTTTAAATGCAATAGTTCCCATTATAAGTTGAAATTAACGACATTGAGAGTTTTCAATTCCTGGCAATATTTTCTTGCGTTAGAACTAATGTTAATTTCATTATATGCAGATTTTGTATCAATAGTTGTGTGAACTCTATCCTAATTGAAATTTATATGTGCAGTGCTTCAAAAATCCAG

Coding sequence (CDS)

ATGGCAGCCGGGAACAACGCGCAGCTAATGGTGGTGGCATACGAAAGGTCTGCTGACCACAAGATCCTAGCACTGGCGGCGGCTGCCGGGCAAACCGGCGGTCGGGTTGTCTGCATAATTGGACGGCAAGAAGATCTTCATGTATCACAAGCAATTATCGGGGTGGAATCATATGATCACCGAATAGAGTTCGTGGTGGGAGAAGCCGAGAAGCTTATAAAAACTCAATACAGAGAAGTAGATTTTGTTCTGATAGACTGCAATCTGGAGGGCCACGTGGCGGTGCTGGAGGCCGTTAGATCGAGAAGGGACAACCAAAGCGCCACCGTGGTGGTGGGTTTTAACGCGATGAGCAAAAGATGTGGAGGAGGAGCAGGATGGTCGGGGGGATCGACCACGCATCTTTTGCCAATCGGAAAAGGGTTGATGGTGACGAAAGTGGCGGCGGAGGTGTCAAATTCCGGCGATTATGGGAGGAGGATGAGGAGGAGGAGCCAAAGCCAGTGGGTTGTGAAGGTGGATAAATGCACCGGAGAAGAACATGTTTTTAGGTCACGTTATATTTACCTGAATAGTTTCTCGAAGACCCGCCCAAACGAGGGGGAGAATCCCTATGATCTAACTATAAATAATCAAGTATATATTAGGAGAGAGGCAGCTGGATACTCAATTGTAGAGATCTCCTTCACAACCGCCGTCCCAGGTTTCTTTTTTGAATTTGGCAGTTCCTTTTTTTTTTTTTTTTTTTCTTCCGCTCTTATCTACGTTGCTCATTATTCGTTTTGGACATTCAGGATAACCGGAAGTATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACGCTCTCCTCCAAAAATGTCAAGAACCTCGAGAAGGTGTGCGCCGACTTGGTCCGCGGTGCAAAGGACAAGAGATTGAGGGTGAAGGGACCAGTAAGAATGCCCACCAAAGTTCTTCACATTACAACCAGGAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTCCGTGTCCACAAGCGAGTTATCGACCTTTTCAGCTCTGCCGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGTGTGGAAGTTGAGGTCACCATTGCCGATCAATGA

Protein sequence

MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIGRQEDLHVSQAIIGVESYDHRIEFVVGEAEKLIKTQYREVDFVLIDCNLEGHVAVLEAVRSRRDNQSATVVVGFNAMSKRCGGGAGWSGGSTTHLLPIGKGLMVTKVAAEVSNSGDYGRRMRRRSQSQWVVKVDKCTGEEHVFRSRYIYLNSFSKTRPNEGENPYDLTINNQVYIRREAAGYSIVEISFTTAVPGFFFEFGSSFFFFFFSSALIYVAHYSFWTFRITGSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ
Homology
[Close]
BLAST of Clc05G09420.2 vs. NCBI nr
Match: KAG6576788.1 (40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 496.5 bits (1277), Expect = 2.1e-136
Identity = 280/393 (71.25%), Postives = 302/393 (76.84%), Query Frame = 0 

Query: 1   MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIGRQEDLHVSQAIIGVESYDH 60
           MAAGNNAQLMVVAYE SADHKILALAAAA QTGGRVVC+I RQEDL +SQ I+GVESY H
Sbjct: 35  MAAGNNAQLMVVAYETSADHKILALAAAARQTGGRVVCVIPRQEDLRLSQEILGVESY-H 94

Query: 61  RIEFVVGEAEKLIKTQYREVDFVLIDCNLEGHVAVLEAVRSRRDNQSATVVVGFNAMSKR 120
            IEFVVGEAEK+I+T YREVDFVLIDCNL+ HVAVL+ VRSR ++Q ATVVVGFNAMSKR
Sbjct: 95  GIEFVVGEAEKVIRTHYREVDFVLIDCNLDSHVAVLDVVRSRNNSQRATVVVGFNAMSKR 154

Query: 121 CGGGAGWSGGSTTHLLPIGKGLMVTKVAAEVSNSGDYGRRMRRRSQSQWVVKVDKCTGEE 180
             G  GWSGGSTTHLLPIGKGL+VTKV AEVS SG  GRR RR   SQWVVKVDKCTGEE
Sbjct: 155 SVG--GWSGGSTTHLLPIGKGLLVTKVGAEVSKSGGDGRRRRR---SQWVVKVDKCTGEE 214

Query: 181 HVFRS--RYIYLNSFSKTRPNEGENPYDLTINNQVYIRREAAGYSIVEISFTTAVPGFFF 240
           HVFR   R   + +   T   + +  +  +I+++    R     +  ++           
Sbjct: 215 HVFRPTLRKTLIVNIIATESYKLQRRHSRSISSE----RGCWKLNRRDLLLNRRP----- 274

Query: 241 EFGSSFFFFFFSSALIYVAHYSFWTFRITGSMAYAAMKPTKPGLEDTQEQIHKIRITLSS 300
                                     RITGSMAYAAMKPTK GLEDTQEQIHKIRITLSS
Sbjct: 275 --------------------------RITGSMAYAAMKPTKAGLEDTQEQIHKIRITLSS 334

Query: 301 KNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHK 360
           KNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHK
Sbjct: 335 KNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHK 386

Query: 361 RVIDLFSSADVVKQITSITIEPGVEVEVTIADQ 392
           RVIDLFSSADVVKQITSITIEPGVEVEVTIADQ
Sbjct: 395 RVIDLFSSADVVKQITSITIEPGVEVEVTIADQ 386

[Close]
BLAST of Clc05G09420.2 vs. NCBI nr
Match: XP_038905944.1 (uncharacterized protein LOC120091864 [Benincasa hispida])

HSP 1 Score: 317.4 bits (812), Expect = 1.7e-82
Identity = 164/187 (87.70%), Postives = 176/187 (94.12%), Query Frame = 0 

Query: 1   MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIGRQEDLHVSQAIIGVESYDH 60
           MAAGNNAQLMVVAYE SADHK+LALAAAA QTGGRVVCII RQED+HVSQAI+GV+S+DH
Sbjct: 35  MAAGNNAQLMVVAYEGSADHKVLALAAAAVQTGGRVVCIIQRQEDVHVSQAIMGVKSHDH 94

Query: 61  RIEFVVGEAEKLIKTQYREVDFVLIDCNLEGHVAVLEAVRSRR-DNQSATVVVGFNAMSK 120
           RIEF+VGEAEKLIKTQYRE DFVLIDCNLEG+VAV+EAVRSRR +N+ ATVVVGFNAMSK
Sbjct: 95  RIEFMVGEAEKLIKTQYREADFVLIDCNLEGYVAVVEAVRSRRKNNEGATVVVGFNAMSK 154

Query: 121 RCGGGAGWSGGSTTHLLPIGKGLMVTKVAAEVSNSGDYGRRMRRRSQSQWVVKVDKCTGE 180
           RCGGG GW GGSTTHLLPIGKGL+VTKVAAE+S SGD GRRMRRRSQSQWVVKVDKCTGE
Sbjct: 155 RCGGG-GWLGGSTTHLLPIGKGLIVTKVAAELSKSGDDGRRMRRRSQSQWVVKVDKCTGE 214

Query: 181 EHVFRSR 187
           EHVFR R
Sbjct: 215 EHVFRVR 220

[Close]
BLAST of Clc05G09420.2 vs. NCBI nr
Match: KAA0067688.1 (uncharacterized protein E6C27_scaffold70G00580 [Cucumis melo var. makuwa] >TYK23692.1 uncharacterized protein E5676_scaffold577G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 311.6 bits (797), Expect = 9.5e-81
Identity = 163/188 (86.70%), Postives = 171/188 (90.96%), Query Frame = 0 

Query: 1   MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIGRQEDLHVSQAIIGVESYDH 60
           MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCII RQEDLHVSQAI+G+ S+DH
Sbjct: 35  MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIQRQEDLHVSQAILGMVSHDH 94

Query: 61  RIEFVVGEAEKLIKTQYREVDFVLIDCNLEGHVAVLEAVRSRRDN-QSATVVVGFNAMSK 120
            IEFVVGEAEKLIKTQY EVDFVLIDCNL+ HVAVLEAVRSRR N Q AT+VVGFNAMSK
Sbjct: 95  GIEFVVGEAEKLIKTQYTEVDFVLIDCNLDSHVAVLEAVRSRRKNDQGATLVVGFNAMSK 154

Query: 121 RCGGGA-GWSGGSTTHLLPIGKGLMVTKVAAEVSNSGDYGRRMRRRSQSQWVVKVDKCTG 180
           RC GGA GWS G TTHLLPIGKG+MVT+V AEVS +GD GRRMRRR QSQWVVKVDKCTG
Sbjct: 155 RCEGGATGWSEGLTTHLLPIGKGVMVTRVGAEVSKAGDDGRRMRRRGQSQWVVKVDKCTG 214

Query: 181 EEHVFRSR 187
           EEHVFR R
Sbjct: 215 EEHVFRVR 222

[Close]
BLAST of Clc05G09420.2 vs. NCBI nr
Match: XP_008439110.1 (PREDICTED: uncharacterized protein LOC103484000 [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 3.6e-80
Identity = 162/188 (86.17%), Postives = 170/188 (90.43%), Query Frame = 0 

Query: 1   MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIGRQEDLHVSQAIIGVESYDH 60
           MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCII RQEDLHVSQAI+G+ S+DH
Sbjct: 35  MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIQRQEDLHVSQAILGMVSHDH 94

Query: 61  RIEFVVGEAEKLIKTQYREVDFVLIDCNLEGHVAVLEAVRSRRDN-QSATVVVGFNAMSK 120
            IEFVVGEAEKLIKTQY EVDFVLIDCNL+ H AVLEAVRSRR N Q AT+VVGFNAMSK
Sbjct: 95  GIEFVVGEAEKLIKTQYTEVDFVLIDCNLDSHAAVLEAVRSRRKNDQGATLVVGFNAMSK 154

Query: 121 RCGGGA-GWSGGSTTHLLPIGKGLMVTKVAAEVSNSGDYGRRMRRRSQSQWVVKVDKCTG 180
           RC GGA GWS G TTHLLPIGKG+MVT+V AEVS +GD GRRMRRR QSQWVVKVDKCTG
Sbjct: 155 RCEGGATGWSEGLTTHLLPIGKGVMVTRVGAEVSKAGDDGRRMRRRRQSQWVVKVDKCTG 214

Query: 181 EEHVFRSR 187
           EEHVFR R
Sbjct: 215 EEHVFRVR 222

[Close]
BLAST of Clc05G09420.2 vs. NCBI nr
Match: XP_004148160.1 (uncharacterized protein LOC101217454 [Cucumis sativus] >KGN57289.1 hypothetical protein Csa_009690 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 2.6e-78
Identity = 160/188 (85.11%), Postives = 169/188 (89.89%), Query Frame = 0 

Query: 1   MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIGRQEDLHVSQAIIGVESYDH 60
           MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCII RQEDLHVSQAI+G+ S+DH
Sbjct: 35  MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIQRQEDLHVSQAILGMVSHDH 94

Query: 61  RIEFVVGEAEKLIKTQYREVDFVLIDCNLEGHVAVLEAVRSRRDN-QSATVVVGFNAMSK 120
            IEFVVGEAEKLIKTQY EVDFVL+DCNL  H+AVLEAVRSRR N Q AT+VVGFNAMSK
Sbjct: 95  GIEFVVGEAEKLIKTQYTEVDFVLMDCNLGCHMAVLEAVRSRRKNDQGATLVVGFNAMSK 154

Query: 121 RCGGGA-GWSGGSTTHLLPIGKGLMVTKVAAEVSNSGDYGRRMRRRSQSQWVVKVDKCTG 180
           RC GGA GWS GSTTHLLPIG G+MVTKV AE S +G+ GRRMRRR QSQWVVKVDKCTG
Sbjct: 155 RCEGGATGWSEGSTTHLLPIGMGVMVTKVGAEESKAGEDGRRMRRRRQSQWVVKVDKCTG 214

Query: 181 EEHVFRSR 187
           EEHVFR R
Sbjct: 215 EEHVFRVR 222

[Close]
BLAST of Clc05G09420.2 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.9e-55
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 270 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 329
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 330 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 389
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 390 D 391
           D
Sbjct: 121 D 121

[Close]
BLAST of Clc05G09420.2 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 214.9 bits (546), Expect = 1.6e-54
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 271 AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 330
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 331 KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 390
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of Clc05G09420.2 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-50
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 0 

Query: 270 MAYA-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 329
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 330 PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 389
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 390 ADQ 392
           +DQ
Sbjct: 126 SDQ 128

[Close]
BLAST of Clc05G09420.2 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.0e-41
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 0 

Query: 274 AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 333
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 334 HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 391
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of Clc05G09420.2 vs. ExPASy Swiss-Prot
Match: P60866 (40S ribosomal protein S20 OS=Homo sapiens OX=9606 GN=RPS20 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.0e-41
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 0 

Query: 274 AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 333
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 334 HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 391
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of Clc05G09420.2 vs. ExPASy TrEMBL
Match: A0A5D3DJF3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00580 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 4.6e-81
Identity = 163/188 (86.70%), Postives = 171/188 (90.96%), Query Frame = 0 

Query: 1   MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIGRQEDLHVSQAIIGVESYDH 60
           MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCII RQEDLHVSQAI+G+ S+DH
Sbjct: 35  MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIQRQEDLHVSQAILGMVSHDH 94

Query: 61  RIEFVVGEAEKLIKTQYREVDFVLIDCNLEGHVAVLEAVRSRRDN-QSATVVVGFNAMSK 120
            IEFVVGEAEKLIKTQY EVDFVLIDCNL+ HVAVLEAVRSRR N Q AT+VVGFNAMSK
Sbjct: 95  GIEFVVGEAEKLIKTQYTEVDFVLIDCNLDSHVAVLEAVRSRRKNDQGATLVVGFNAMSK 154

Query: 121 RCGGGA-GWSGGSTTHLLPIGKGLMVTKVAAEVSNSGDYGRRMRRRSQSQWVVKVDKCTG 180
           RC GGA GWS G TTHLLPIGKG+MVT+V AEVS +GD GRRMRRR QSQWVVKVDKCTG
Sbjct: 155 RCEGGATGWSEGLTTHLLPIGKGVMVTRVGAEVSKAGDDGRRMRRRGQSQWVVKVDKCTG 214

Query: 181 EEHVFRSR 187
           EEHVFR R
Sbjct: 215 EEHVFRVR 222

[Close]
BLAST of Clc05G09420.2 vs. ExPASy TrEMBL
Match: A0A1S3AY08 (uncharacterized protein LOC103484000 OS=Cucumis melo OX=3656 GN=LOC103484000 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.8e-80
Identity = 162/188 (86.17%), Postives = 170/188 (90.43%), Query Frame = 0 

Query: 1   MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIGRQEDLHVSQAIIGVESYDH 60
           MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCII RQEDLHVSQAI+G+ S+DH
Sbjct: 35  MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIQRQEDLHVSQAILGMVSHDH 94

Query: 61  RIEFVVGEAEKLIKTQYREVDFVLIDCNLEGHVAVLEAVRSRRDN-QSATVVVGFNAMSK 120
            IEFVVGEAEKLIKTQY EVDFVLIDCNL+ H AVLEAVRSRR N Q AT+VVGFNAMSK
Sbjct: 95  GIEFVVGEAEKLIKTQYTEVDFVLIDCNLDSHAAVLEAVRSRRKNDQGATLVVGFNAMSK 154

Query: 121 RCGGGA-GWSGGSTTHLLPIGKGLMVTKVAAEVSNSGDYGRRMRRRSQSQWVVKVDKCTG 180
           RC GGA GWS G TTHLLPIGKG+MVT+V AEVS +GD GRRMRRR QSQWVVKVDKCTG
Sbjct: 155 RCEGGATGWSEGLTTHLLPIGKGVMVTRVGAEVSKAGDDGRRMRRRRQSQWVVKVDKCTG 214

Query: 181 EEHVFRSR 187
           EEHVFR R
Sbjct: 215 EEHVFRVR 222

[Close]
BLAST of Clc05G09420.2 vs. ExPASy TrEMBL
Match: A0A0A0L8E9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176350 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.3e-78
Identity = 160/188 (85.11%), Postives = 169/188 (89.89%), Query Frame = 0 

Query: 1   MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIGRQEDLHVSQAIIGVESYDH 60
           MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCII RQEDLHVSQAI+G+ S+DH
Sbjct: 35  MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIQRQEDLHVSQAILGMVSHDH 94

Query: 61  RIEFVVGEAEKLIKTQYREVDFVLIDCNLEGHVAVLEAVRSRRDN-QSATVVVGFNAMSK 120
            IEFVVGEAEKLIKTQY EVDFVL+DCNL  H+AVLEAVRSRR N Q AT+VVGFNAMSK
Sbjct: 95  GIEFVVGEAEKLIKTQYTEVDFVLMDCNLGCHMAVLEAVRSRRKNDQGATLVVGFNAMSK 154

Query: 121 RCGGGA-GWSGGSTTHLLPIGKGLMVTKVAAEVSNSGDYGRRMRRRSQSQWVVKVDKCTG 180
           RC GGA GWS GSTTHLLPIG G+MVTKV AE S +G+ GRRMRRR QSQWVVKVDKCTG
Sbjct: 155 RCEGGATGWSEGSTTHLLPIGMGVMVTKVGAEESKAGEDGRRMRRRRQSQWVVKVDKCTG 214

Query: 181 EEHVFRSR 187
           EEHVFR R
Sbjct: 215 EEHVFRVR 222

[Close]
BLAST of Clc05G09420.2 vs. ExPASy TrEMBL
Match: A0A6J1J8E3 (uncharacterized protein LOC111483494 OS=Cucurbita maxima OX=3661 GN=LOC111483494 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 2.7e-73
Identity = 152/186 (81.72%), Postives = 162/186 (87.10%), Query Frame = 0 

Query: 1   MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIGRQEDLHVSQAIIGVESYDH 60
           MAAGNNAQLMVVAYE SADHKILALAAAA QTGGRV+C+I RQEDL +SQ I+GVESY H
Sbjct: 35  MAAGNNAQLMVVAYETSADHKILALAAAARQTGGRVICVIPRQEDLRLSQEILGVESY-H 94

Query: 61  RIEFVVGEAEKLIKTQYREVDFVLIDCNLEGHVAVLEAVRSRRDNQSATVVVGFNAMSKR 120
            IEFVVGEAEK+I+T YREVDFVLIDCNL+ HVAVL+ VRSR++NQ ATVVVGFNAMSKR
Sbjct: 95  GIEFVVGEAEKVIRTHYREVDFVLIDCNLDSHVAVLDVVRSRKNNQRATVVVGFNAMSKR 154

Query: 121 CGGGAGWSGGSTTHLLPIGKGLMVTKVAAEVSNSGDYGRRMRRRSQSQWVVKVDKCTGEE 180
             G  GWSGGSTTHLLPIGKGLMVTKV AEVS SG  GRR RR   SQWVVKVDKCTGEE
Sbjct: 155 SVG--GWSGGSTTHLLPIGKGLMVTKVGAEVSKSGSDGRRRRR---SQWVVKVDKCTGEE 214

Query: 181 HVFRSR 187
           HVFR R
Sbjct: 215 HVFRVR 214

[Close]
BLAST of Clc05G09420.2 vs. ExPASy TrEMBL
Match: A0A6J1E9C9 (uncharacterized protein LOC111430589 OS=Cucurbita moschata OX=3662 GN=LOC111430589 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 8.7e-72
Identity = 150/186 (80.65%), Postives = 161/186 (86.56%), Query Frame = 0 

Query: 1   MAAGNNAQLMVVAYERSADHKILALAAAAGQTGGRVVCIIGRQEDLHVSQAIIGVESYDH 60
           MAAGNNAQLMVVAYE SADHKILALAAAA QTGGRVVC+I RQEDL +SQ I+GVESY H
Sbjct: 35  MAAGNNAQLMVVAYETSADHKILALAAAARQTGGRVVCVIPRQEDLRLSQEILGVESY-H 94

Query: 61  RIEFVVGEAEKLIKTQYREVDFVLIDCNLEGHVAVLEAVRSRRDNQSATVVVGFNAMSKR 120
            IEFVVGEAEK+I+T YREVDFVLIDCNL+ HVAVL+ VRSR+++Q ATVVVGFNAMSKR
Sbjct: 95  GIEFVVGEAEKVIRTHYREVDFVLIDCNLDSHVAVLDVVRSRKNSQRATVVVGFNAMSKR 154

Query: 121 CGGGAGWSGGSTTHLLPIGKGLMVTKVAAEVSNSGDYGRRMRRRSQSQWVVKVDKCTGEE 180
             G  GWSGGSTTHLLPIGKGL+VTKV AEVS SG  GRR R    SQWVVKVDKCTGEE
Sbjct: 155 SVG--GWSGGSTTHLLPIGKGLLVTKVGAEVSKSGGDGRRRR----SQWVVKVDKCTGEE 213

Query: 181 HVFRSR 187
           HVFR R
Sbjct: 215 HVFRVR 213

[Close]
BLAST of Clc05G09420.2 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 218.0 bits (554), Expect = 1.3e-56
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 270 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 329
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 330 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 389
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 390 D 391
           D
Sbjct: 121 D 121

[Close]
BLAST of Clc05G09420.2 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 218.0 bits (554), Expect = 1.3e-56
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 270 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 329
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 330 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 389
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 390 D 391
           D
Sbjct: 121 D 121

[Close]
BLAST of Clc05G09420.2 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 218.0 bits (554), Expect = 1.3e-56
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 270 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 329
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 330 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 389
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 390 D 391
           D
Sbjct: 121 D 121

[Close]
BLAST of Clc05G09420.2 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-55
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 271 AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 330
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 331 KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 390
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of Clc05G09420.2 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-55
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 271 AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 330
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 331 KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 390
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

The following BLAST results are available for this feature:
BLAST of Clc05G09420.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6576788.12.1e-13671.2540S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_038905944.11.7e-8287.70uncharacterized protein LOC120091864 [Benincasa hispida][more]
KAA0067688.19.5e-8186.70uncharacterized protein E6C27_scaffold70G00580 [Cucumis melo var. makuwa] >TYK23... [more]
XP_008439110.13.6e-8086.17PREDICTED: uncharacterized protein LOC103484000 [Cucumis melo][more]
XP_004148160.12.6e-7885.11uncharacterized protein LOC101217454 [Cucumis sativus] >KGN57289.1 hypothetical ... [more]
BLAST of Clc05G09420.2 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STY61.9e-5591.7440S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1[more]
P492001.6e-5490.8340S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2[more]
P356863.1e-5083.7440S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2... [more]
Q3ZBH82.0e-4170.0940S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1[more]
P608662.0e-4170.0940S ribosomal protein S20 OS=Homo sapiens OX=9606 GN=RPS20 PE=1 SV=1[more]
BLAST of Clc05G09420.2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DJF34.6e-8186.70Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AY081.8e-8086.17uncharacterized protein LOC103484000 OS=Cucumis melo OX=3656 GN=LOC103484000 PE=... [more]
A0A0A0L8E91.3e-7885.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176350 PE=4 SV=1[more]
A0A6J1J8E32.7e-7381.72uncharacterized protein LOC111483494 OS=Cucurbita maxima OX=3661 GN=LOC111483494... [more]
A0A6J1E9C98.7e-7280.65uncharacterized protein LOC111430589 OS=Cucurbita moschata OX=3662 GN=LOC1114305... [more]
BLAST of Clc05G09420.2 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G47370.21.3e-5691.74Ribosomal protein S10p/S20e family protein [more]
AT3G47370.11.3e-5691.74Ribosomal protein S10p/S20e family protein [more]
AT3G47370.31.3e-5691.74Ribosomal protein S10p/S20e family protein [more]
AT3G45030.11.1e-5590.83Ribosomal protein S10p/S20e family protein [more]
AT5G62300.11.1e-5590.83Ribosomal protein S10p/S20e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 326..341
score: 42.43
coord: 291..304
score: 44.51
coord: 348..362
score: 52.69
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 270..390
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 289..388
score: 18.389648
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 293..387
e-value: 2.0E-38
score: 143.7
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 293..387
e-value: 1.1E-26
score: 92.9
IPR009902Protein of unknown function DUF1442PFAMPF07279DUF1442coord: 1..184
e-value: 4.6E-16
score: 58.8
IPR036838Ribosomal protein S10 domain superfamilyGENE3D3.30.70.600Ribosomal protein S10 domaincoord: 276..390
e-value: 1.2E-47
score: 162.7
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILY54999Ribosomal protein S10coord: 291..388
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMTIGR01046TIGR01046coord: 290..388
e-value: 3.2E-39
score: 131.3
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 22..152
e-value: 7.5E-9
score: 37.2
NoneNo IPR availablePANTHERPTHR11700:SF27RIBOSOMAL PROTEIN S10-RELATEDcoord: 270..390
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 315..330

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Clc05G09420Clc05G09420gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc05G09420.2-exonClc05G09420.2-exon-ClcChr05:7484288..7484698exon
Clc05G09420.2-exonClc05G09420.2-exon-ClcChr05:7485003..7485116exon
Clc05G09420.2-exonClc05G09420.2-exon-ClcChr05:7485519..7485662exon
Clc05G09420.2-exonClc05G09420.2-exon-ClcChr05:7485828..7485954exon
Clc05G09420.2-exonClc05G09420.2-exon-ClcChr05:7487151..7487185exon
Clc05G09420.2-exonClc05G09420.2-exon-ClcChr05:7488092..7488131exon
Clc05G09420.2-exonClc05G09420.2-exon-ClcChr05:7489022..7489042exon
Clc05G09420.2-exonClc05G09420.2-exon-ClcChr05:7494112..7494663exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc05G09420.2-three_prime_utrClc05G09420.2-three_prime_utr-ClcChr05:7484288..7484555three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc05G09420.2-cdsClc05G09420.2-cds-ClcChr05:7484556..7484698CDS
Clc05G09420.2-cdsClc05G09420.2-cds-ClcChr05:7485003..7485116CDS
Clc05G09420.2-cdsClc05G09420.2-cds-ClcChr05:7485519..7485662CDS
Clc05G09420.2-cdsClc05G09420.2-cds-ClcChr05:7485828..7485954CDS
Clc05G09420.2-cdsClc05G09420.2-cds-ClcChr05:7487151..7487185CDS
Clc05G09420.2-cdsClc05G09420.2-cds-ClcChr05:7488092..7488131CDS
Clc05G09420.2-cdsClc05G09420.2-cds-ClcChr05:7489022..7489042CDS
Clc05G09420.2-cdsClc05G09420.2-cds-ClcChr05:7494112..7494663CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Clc05G09420.2Clc05G09420.2-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome