Clc04G04650.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc04G04650.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	sigma factor binding protein 2, chloroplastic
Location	ClcChr04: 16773357 .. 16774358 (-)
Sequence length	1002
RNA-Seq Expression	Clc04G04650.1
Synteny	Clc04G04650.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAACTTCTTCCCTAAAAACCCATTTCCTCCCTTGCAAAATGGACGCCCGCGCCGGCACCGGAAACAACCACAGAATCCTAGACGCCATTCACCGGCGTAAACCCACGAAGAAAACGAAACAACCCAACAAAATAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTAGTCCAAGAACTCACCGGCCAAAACGCTGACTTTCCCGACCCCTCTAAATTCCCCCCCTCCGCCGTCTGCGGCGGCGCCGCCTCCTCAGACCTTGTCCACAACACCGCATCCGGCGGCGATGACGACGATGATGGTGCTAGTAATCTCATGATGAATAATAACAACCCTTCACTTGCCGTCGAGCTGCCGGCGGAGGACGACTTTCTTGGTAGTATTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCAGCGGCGGTTGTCTATGAATCTTATGCAAGGTGAAAATATCGATATATAATGTGTGAGATCTTTGTATCTCTTCAATTGTTGCTTCCATTTTTTTATAAGCTTTTTATTATATAAAATAATATATATATATATATTTGTATATTAATTAGGGAGTTAATTGTTAAAAAATATAAAGGTCTTAAATTTATGAACACATCTATACCATAATAAAAGGATGTTTGAATAAAAGAATGCGTATGAATTCTCTATTTTGATTTTACATACTATATCTCATTATGCTGAGTATTGTTTTTCTTAATATTTGATTGTGACTTTCCATCACATTTTAAGATGGAGATAGATTAATTAATTATTTATCCTATATAAAATATGTTAAATTTTGAAAAGAATACATGAGTGCACTCCTCTGATGAACCCATTTTAACAGACCTGACTTTATTACACACAAAAATTATATGTTCTAAAAAAGAAGTAAGAAGTACTTGGCGCACAAC

mRNA sequence

AAAAAAAAAAAAAACTTCTTCCCTAAAAACCCATTTCCTCCCTTGCAAAATGGACGCCCGCGCCGGCACCGGAAACAACCACAGAATCCTAGACGCCATTCACCGGCGTAAACCCACGAAGAAAACGAAACAACCCAACAAAATAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTAGTCCAAGAACTCACCGGCCAAAACGCTGACTTTCCCGACCCCTCTAAATTCCCCCCCTCCGCCGTCTGCGGCGGCGCCGCCTCCTCAGACCTTGTCCACAACACCGCATCCGGCGGCGATGACGACGATGATGGTGCTAGTAATCTCATGATGAATAATAACAACCCTTCACTTGCCGTCGAGCTGCCGGCGGAGGACGACTTTCTTGGTAGTATTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCAGCGGCGGTTGTCTATGAATCTTATGCAAGGTGAAAATATCGATATATAATGTGTGAGATCTTTGTATCTCTTCAATTGTTGCTTCCATTTTTTTATAAGCTTTTTATTATATAAAATAATATATATATATATATTTGTATATTAATTAGGGAGTTAATTGTTAAAAAATATAAAGGTCTTAAATTTATGAACACATCTATACCATAATAAAAGGATGTTTGAATAAAAGAATGCGTATGAATTCTCTATTTTGATTTTACATACTATATCTCATTATGCTGAGTATTGTTTTTCTTAATATTTGATTGTGACTTTCCATCACATTTTAAGATGGAGATAGATTAATTAATTATTTATCCTATATAAAATATGTTAAATTTTGAAAAGAATACATGAGTGCACTCCTCTGATGAACCCATTTTAACAGACCTGACTTTATTACACACAAAAATTATATGTTCTAAAAAAGAAGTAAGAAGTACTTGGCGCACAAC

Coding sequence (CDS)

ATGGACGCCCGCGCCGGCACCGGAAACAACCACAGAATCCTAGACGCCATTCACCGGCGTAAACCCACGAAGAAAACGAAACAACCCAACAAAATAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTAGTCCAAGAACTCACCGGCCAAAACGCTGACTTTCCCGACCCCTCTAAATTCCCCCCCTCCGCCGTCTGCGGCGGCGCCGCCTCCTCAGACCTTGTCCACAACACCGCATCCGGCGGCGATGACGACGATGATGGTGCTAGTAATCTCATGATGAATAATAACAACCCTTCACTTGCCGTCGAGCTGCCGGCGGAGGACGACTTTCTTGGTAGTATTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCAGCGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Protein sequence

MDARAGTGNNHRILDAIHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR

Homology

[Close]

BLAST of Clc04G04650.1 vs. NCBI nr
Match: XP_038882812.1 (sigma factor binding protein 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 272.7 bits (696), Expect = 2.0e-69
Identity = 140/163 (85.89%), Postives = 152/163 (93.25%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQEL 60
           M+A A TGNNHRILDA++RRKPTKKTKQPNK KPIKVVYISNPMKVQTSAS+FMALVQEL
Sbjct: 1   MNAGADTGNNHRILDAVNRRKPTKKTKQPNKKKPIKVVYISNPMKVQTSASKFMALVQEL 60

Query: 61  TGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVELPA 120
           TG++ADFPDPSKF PSAVCGGAASSDL+HNTASGG DD+ GASNL+MNNNN SLAVELP 
Sbjct: 61  TGRDADFPDPSKFSPSAVCGGAASSDLLHNTASGGGDDEHGASNLIMNNNNCSLAVELPV 120

Query: 121 EDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           +DD LGS Y+DF+DLIFPPPVIGNFSGLLP AAAAVVYESYAR
Sbjct: 121 DDDILGSFYDDFDDLIFPPPVIGNFSGLLP-AAAAVVYESYAR 162

[Close]

BLAST of Clc04G04650.1 vs. NCBI nr
Match: XP_008455708.1 (PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 6.6e-60
Identity = 127/165 (76.97%), Postives = 141/165 (85.45%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC  AAS+D ++NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 139

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 140 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 183

[Close]

BLAST of Clc04G04650.1 vs. NCBI nr
Match: KAA0025974.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 241.1 bits (614), Expect = 6.6e-60
Identity = 127/165 (76.97%), Postives = 141/165 (85.45%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC  AAS+D ++NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 164

[Close]

BLAST of Clc04G04650.1 vs. NCBI nr
Match: TYK04210.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 239.2 bits (609), Expect = 2.5e-59
Identity = 126/165 (76.36%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSK PPSAVC  AAS+D ++NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164

[Close]

BLAST of Clc04G04650.1 vs. NCBI nr
Match: KAE8649682.1 (hypothetical protein Csa_012221 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-58
Identity = 125/165 (75.76%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHRRKPTKKTKQP-NKI-KPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA   TG++HR LDA++RRKPTKKTKQP N++ KPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC GAAS+D ++NT S G  +DDGA+NL++N+NN SL  E+
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSG-GEDDGATNLIVNSNNSSLVDEV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFP PVIGNFSGLLPA  AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of Clc04G04650.1 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.9e-08
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 17 IHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNA-DF-PDPSKFP 76
          + R+ P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQ+A D  P+P   P
Sbjct: 22 VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

[Close]

BLAST of Clc04G04650.1 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.4e-06
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 19 RRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAV 78
          R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQ+A    PS    +AV
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

[Close]

BLAST of Clc04G04650.1 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.2e-60
Identity = 127/165 (76.97%), Postives = 141/165 (85.45%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC  AAS+D ++NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 164

[Close]

BLAST of Clc04G04650.1 vs. ExPASy TrEMBL
Match: A0A1S3C276 (sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495816 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.2e-60
Identity = 127/165 (76.97%), Postives = 141/165 (85.45%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC  AAS+D ++NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 139

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 140 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 183

[Close]

BLAST of Clc04G04650.1 vs. ExPASy TrEMBL
Match: A0A5D3BYM2 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00110 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.2e-59
Identity = 126/165 (76.36%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHRRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++RRKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSK PPSAVC  AAS+D ++NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164

[Close]

BLAST of Clc04G04650.1 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58
Identity = 125/165 (75.76%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHRRKPTKKTKQP-NKI-KPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA   TG++HR LDA++RRKPTKKTKQP N++ KPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC GAAS+D ++NT S G  +DDGA+NL++N+NN SL  E+
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSG-GEDDGATNLIVNSNNSSLVDEV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFP PVIGNFSGLLPA  AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of Clc04G04650.1 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 9.3e-52
Identity = 115/163 (70.55%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 3   ARAGTGNNHRILDAIHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTG 62
           A  GTGN+HR+LD +HRRKPTKKTKQPNK KPIKVVYISNPMKVQ SAS FMALVQ+LTG
Sbjct: 5   AGTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTG 64

Query: 63  QNADFPDPSKFPPSAVCGGAASSDLVHNTASGGDDDDDGASNLMMNNNNPSLAVELPAED 122
           Q+ADFPDPS FPP+AV   AA  D +HNT +  +         +MNNNNPSL VE+P ED
Sbjct: 65  QDADFPDPSTFPPAAVRDAAAFPD-IHNTTADAN---------LMNNNNPSLTVEIPMED 124

Query: 123 D-FLGSIYNDFEDLIFPPPVIGNFSGLLPAAAA-AVVYESYAR 164
           D FLGS Y+D +DLIFPPPVIGN+  LLPAAAA AV+YESYAR
Sbjct: 125 DPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of Clc04G04650.1 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-09
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 17 IHRRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNA-DF-PDPSKFP 76
          + R+ P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQ+A D  P+P   P
Sbjct: 22 VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSP 81

[Close]

BLAST of Clc04G04650.1 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 52.8 bits (125), Expect = 3.1e-07
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 19 RRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAV 78
          R  P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQ+A    PS    +AV
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

The following BLAST results are available for this feature:

BLAST of Clc04G04650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882812.1	2.0e-69	85.89	sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]	[more]
XP_008455708.1	6.6e-60	76.97	PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]	[more]
KAA0025974.1	6.6e-60	76.97	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
TYK04210.1	2.5e-59	76.36	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
KAE8649682.1	2.1e-58	75.76	hypothetical protein Csa_012221 [Cucumis sativus]	[more]

BLAST of Clc04G04650.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	7.9e-08	56.45	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	4.4e-06	53.33	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Clc04G04650.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJV9	3.2e-60	76.97	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3C276	3.2e-60	76.97	sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5D3BYM2	1.2e-59	76.36	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0L3J8	1.0e-58	75.76	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A6J1EY87	9.3e-52	70.55	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of Clc04G04650.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	5.6e-09	56.45	sigma factor binding protein 1	[more]
AT2G41180.1	3.1e-07	53.33	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 40..65 e-value: 2.1E-12 score: 46.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..108
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..153
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc04G04650	Clc04G04650	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc04G04650.1-exon	Clc04G04650.1-exon-ClcChr04:16773357..16774358	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc04G04650.1-three_prime_utr	Clc04G04650.1-three_prime_utr-ClcChr04:16773357..16773817	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc04G04650.1-cds	Clc04G04650.1-cds-ClcChr04:16773818..16774309	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc04G04650.1-five_prime_utr	Clc04G04650.1-five_prime_utr-ClcChr04:16774310..16774358	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc04G04650.1	Clc04G04650.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity