Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAAACTGATGCGACTAATAATCTTTCAGCTCAGATCGCCAACATGACATCCTTGCTGCAAACAATTGCGTTGAACAACCAAGGTGAAGCAGCTGTGTCAATGGACGCAATGAACACGGTGAATGCAACAACATCTGTAAGCTGTGTGCAATGCGATGATGGCCACTTGTACGATATGTGTCCCTACAACCCACAATCTGTCTGTTATGTTTAGAATAACCCGTACTCTAAGACTTATAATCTGGGTTGGAGGAACCATCCTAACTTTGGATGGGGAGGAAACCAATCACAGACGCAGGGAACTGGACAACAGCCGCAGAGAAGCAATAACCCTGTGTACAACCAAGGTGTTCAAGGGCATCAAGCACAACGAAACGAGTCAGCAAATTCATCATCATCATCCCTTAAAGCACTTATCCGTCAAACTATCACCAAAAATGAAGAAACGCTTAAGTCATTGGAAGCGATGCTCCAAAACCAAATGGGTGAAATAAAAAGCCATGCCATTGCAATCTGA
mRNA sequence
ATGATTGAAACTGATGCGACTAATAATCTTTCAGCTCAGATCGCCAACATGACATCCTTGCTGCAAACAATTGCGTTGAACAACCAAGGTGAAGCAGCTGTGTCAATGGACGCAATGAACACGGTGAATGCAACAACATCTAATAACCCGTACTCTAAGACTTATAATCTGGGTTGGAGGAACCATCCTAACTTTGGATGGGGAGGAAACCAATCACAGACGCAGGGAACTGGACAACAGCCGCAGAGAAGCAATAACCCTGTGTACAACCAAGGTGTTCAAGGGCATCAAGCACAACGAAACGAGTCAGCAAATTCATCATCATCATCCCTTAAAGCACTTATCCGTCAAACTATCACCAAAAATGAAGAAACGCTTAAGTCATTGGAAGCGATGCTCCAAAACCAAATGGGTGAAATAAAAAGCCATGCCATTGCAATCTGA
Coding sequence (CDS)
ATGATTGAAACTGATGCGACTAATAATCTTTCAGCTCAGATCGCCAACATGACATCCTTGCTGCAAACAATTGCGTTGAACAACCAAGGTGAAGCAGCTGTGTCAATGGACGCAATGAACACGGTGAATGCAACAACATCTAATAACCCGTACTCTAAGACTTATAATCTGGGTTGGAGGAACCATCCTAACTTTGGATGGGGAGGAAACCAATCACAGACGCAGGGAACTGGACAACAGCCGCAGAGAAGCAATAACCCTGTGTACAACCAAGGTGTTCAAGGGCATCAAGCACAACGAAACGAGTCAGCAAATTCATCATCATCATCCCTTAAAGCACTTATCCGTCAAACTATCACCAAAAATGAAGAAACGCTTAAGTCATTGGAAGCGATGCTCCAAAACCAAATGGGTGAAATAAAAAGCCATGCCATTGCAATCTGA
Protein sequence
MIETDATNNLSAQIANMTSLLQTIALNNQGEAAVSMDAMNTVNATTSNNPYSKTYNLGWRNHPNFGWGGNQSQTQGTGQQPQRSNNPVYNQGVQGHQAQRNESANSSSSSLKALIRQTITKNEETLKSLEAMLQNQMGEIKSHAIAI
Homology
BLAST of Clc03G09860.1 vs. NCBI nr
Match:
WP_217833202.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])
HSP 1 Score: 141.4 bits (355), Expect = 6.4e-30
Identity = 93/166 (56.02%), Postives = 107/166 (64.46%), Query Frame = 0
Query: 2 IETDATNNLSAQIANMTSLLQTIALNNQGEAAVSMDAMNTVNATTS-------------- 61
IETDAT+NLSAQIANMTSLLQTIALNNQG SMDAMNTVNAT S
Sbjct: 1 IETDATSNLSAQIANMTSLLQTIALNNQGGTVASMDAMNTVNATASVSCVQCGEGHLYDM 60
Query: 62 ------------NNPYSKTYNLGWRNHPNFGWGGNQSQTQGTGQQPQRSNNPVYNQGVQG 121
NNPY+KTYN GWRNH NFGWG NQ QTQG QQPQR N P +NQG QG
Sbjct: 61 CPYNPQSVCYVQNNPYAKTYNPGWRNHLNFGWGRNQQQTQGAEQQPQRGNPPGFNQGNQG 120
Query: 122 --HQAQRNESANSSSS--SLKALIRQTITKNEETLKSLEAMLQNQM 138
HQ QR+ A++S+S SL++L+R E L + +AM Q+Q+
Sbjct: 121 QYHQFQRDPQADASTSFYSLESLLR-------ECLSTRDAMFQSQI 159
BLAST of Clc03G09860.1 vs. NCBI nr
Match:
XP_038902511.1 (uncharacterized protein LOC120089170 [Benincasa hispida])
HSP 1 Score: 75.1 bits (183), Expect = 5.6e-10
Identity = 63/179 (35.20%), Postives = 92/179 (51.40%), Query Frame = 0
Query: 1 MIETDATNNLSAQIANMTSLLQTIALN----NQGEA--------------------AVSM 60
+I D L+AQ+A +TSLLQ +A+N +QG A +V M
Sbjct: 189 IIPVDIMTTLAAQMATVTSLLQMMAINHGTLSQGAAQDNTLAQVAVISCAQCGEGHSVEM 248
Query: 61 DAMNTVNA-TTSNNPYSKTYNLGWRNHPNFGWGGNQSQTQGTGQQ---PQRSNNPVYNQG 120
N + NNPY+ TYN GWRNHPNF WGGN Q Q R N PV++QG
Sbjct: 249 CPSNPQAVYSIQNNPYNNTYNPGWRNHPNFNWGGNNDQGGQRNLQNNSENRGNPPVFHQG 308
Query: 121 V--------QGHQAQRNESANSSSSSLKALIRQTITKNEETLKSLEAMLQN---QMGEI 141
+ Q H + + +++SSSL+AL++Q I KN+ ++S + ++N QMG++
Sbjct: 309 LNQSHHQSRQSHNQPSSSNFSTNSSSLEALLKQYIEKNDAVMQSQASSIRNLEVQMGQL 367
BLAST of Clc03G09860.1 vs. NCBI nr
Match:
XP_030503898.1 (uncharacterized protein LOC115719117 [Cannabis sativa])
HSP 1 Score: 71.6 bits (174), Expect = 6.2e-09
Identity = 50/151 (33.11%), Postives = 89/151 (58.94%), Query Frame = 0
Query: 1 MIETDATNNLSAQIANMTSLLQTI--------ALNNQGEAAVSMDAMNTVNATTSNNPYS 60
++E DA L+AQ+A+MT++L+ + A +++GE + + + N +NNPYS
Sbjct: 228 VLEVDALTALTAQMASMTNILKNMNMGGSVQPARHSKGEISSFLCYVGNQNFNRNNNPYS 287
Query: 61 KTYNLGWRNHPNFGWGGNQSQTQGTGQQPQRSNNPVYNQGVQGHQAQRNESANSSSSSLK 120
+YN W++HPNF WGG + + G Q ++S P ++Q Q Q ++ S +SSL+
Sbjct: 288 NSYNPAWKHHPNFSWGGQGASSSGAQGQGKQSFPPGFSQ--QPRPQQPHQPQGSQTSSLE 347
Query: 121 ALIRQTITKNEETLKSLEAMLQN---QMGEI 141
+L+R + KN+ ++S A L+N Q+G++
Sbjct: 348 SLMRDYMAKNDAVIQSQAASLRNLEVQLGQL 376
BLAST of Clc03G09860.1 vs. NCBI nr
Match:
XP_024933238.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112492876, partial [Ziziphus jujuba])
HSP 1 Score: 67.0 bits (162), Expect = 1.5e-07
Identity = 49/139 (35.25%), Postives = 70/139 (50.36%), Query Frame = 0
Query: 21 LQTIALNNQGEAAVSMDAMNTVNA------TTSNNPYSKTYNLGWRNHPNFGWGGNQSQT 80
++ + +NN G A ++ M T+N NNPYS TYNLGWRNHPNF W N Q
Sbjct: 160 VEDVDINNLG-AQLATQFMKTLNTQFGNFQKQQNNPYSNTYNLGWRNHPNFSWSNNNQQG 219
Query: 81 QGTGQ----QPQRSNNPVYNQGVQGHQAQRNESANSSSSSLKALIRQT-------ITKNE 140
GQ Q Q+ +P Y + H+ Q + A + SSL+ +++ + +NE
Sbjct: 220 SNQGQSGGFQRQQFQSPFYQKPQLAHKNQNSSQAQTQFSSLEQSLQELSNNTNSFMQRNE 279
Query: 141 ETLKSLEAMLQNQMGEIKS 143
+ L + M NQM IKS
Sbjct: 280 QQLTNHSQMFNNQMAAIKS 297
BLAST of Clc03G09860.1 vs. NCBI nr
Match:
XP_038895768.1 (uncharacterized protein LOC120083932 [Benincasa hispida])
HSP 1 Score: 66.2 bits (160), Expect = 2.6e-07
Identity = 57/174 (32.76%), Postives = 82/174 (47.13%), Query Frame = 0
Query: 2 IETDATNNLSAQIANMTSLLQTIALNNQG------------EAAVSMDAMNTVNA----- 61
++ +A LS Q+A MTSLLQ I L N + VS +++
Sbjct: 54 VDANAIATLSTQVATMTSLLQNITLGNTSNQQKVNQVEAFEQPMVSCVGYGNLHSYDKCP 113
Query: 62 -------TTSNNPYSKTYNLGWRNHPNFGW-GGNQSQTQ-GTGQQPQRSNNPVYNQGVQG 121
NNP+SKTYN GWRNHPNF W GGNQ + G Q + P + Q Q
Sbjct: 114 QNPQSVYFIKNNPFSKTYNPGWRNHPNFSWTGGNQQEHHPGANHQQRNGPPPAFQQTHQQ 173
Query: 122 HQAQRNESANSSS--SSLKALIRQTITKNEETLKSLEAMLQNQMGEIKSHAIAI 148
HQ N +SS S L+ L+++ I +N+ LKS + + N + + H + +
Sbjct: 174 HQQPFNRGGQASSLGSPLENLLKEYIAQNDVLLKSQASSITNLEIQEQCHVVTL 227
BLAST of Clc03G09860.1 vs. ExPASy TrEMBL
Match:
A0A6P6GGJ1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112492876 OS=Ziziphus jujuba OX=326968 GN=LOC112492876 PE=4 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 7.4e-08
Identity = 49/139 (35.25%), Postives = 70/139 (50.36%), Query Frame = 0
Query: 21 LQTIALNNQGEAAVSMDAMNTVNA------TTSNNPYSKTYNLGWRNHPNFGWGGNQSQT 80
++ + +NN G A ++ M T+N NNPYS TYNLGWRNHPNF W N Q
Sbjct: 160 VEDVDINNLG-AQLATQFMKTLNTQFGNFQKQQNNPYSNTYNLGWRNHPNFSWSNNNQQG 219
Query: 81 QGTGQ----QPQRSNNPVYNQGVQGHQAQRNESANSSSSSLKALIRQT-------ITKNE 140
GQ Q Q+ +P Y + H+ Q + A + SSL+ +++ + +NE
Sbjct: 220 SNQGQSGGFQRQQFQSPFYQKPQLAHKNQNSSQAQTQFSSLEQSLQELSNNTNSFMQRNE 279
Query: 141 ETLKSLEAMLQNQMGEIKS 143
+ L + M NQM IKS
Sbjct: 280 QQLTNHSQMFNNQMAAIKS 297
BLAST of Clc03G09860.1 vs. ExPASy TrEMBL
Match:
A0A6A3BRM8 (Reverse transcriptase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00109972pilonHSYRG00035 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 44/153 (28.76%), Postives = 80/153 (52.29%), Query Frame = 0
Query: 3 ETDATNNLSAQIANMTSLLQTIALNNQGEAAVSMDAMNTVNATTSNNPYSKTYNLGWRNH 62
E +A +++S Q++ +T++L+ + + +NNPYS TYN GWR H
Sbjct: 460 ELEAKDSVSTQLSAITNMLKNLQCSTD----------------VNNNPYSNTYNAGWRQH 519
Query: 63 PNFGWGGNQSQTQGTGQQPQRSNNP-VYNQGVQGHQAQRNESANSSSSSLKALIRQ---- 122
PNF WG + + Q N P Y + H + + S+++S SSL+A I++
Sbjct: 520 PNFSWGNQGAHNANQPTRQQNHNEPQSYQNAMPCHNSNKGASSSASISSLEATIQEFIST 579
Query: 123 --TITKNEET-LKSLEAMLQNQMGEIKSHAIAI 148
T+ +N T +K+ A+L +Q ++SH++++
Sbjct: 580 TKTMLQNHSTSIKNQGALLYSQGALLQSHSLSL 596
BLAST of Clc03G09860.1 vs. ExPASy TrEMBL
Match:
A0A6A2WPT7 (LRRNT_2 domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117007pilonHSYRG00066 PE=4 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 46/164 (28.05%), Postives = 79/164 (48.17%), Query Frame = 0
Query: 3 ETDATNNLSAQIANMTSLLQTIAL--------------------NNQGEAAVSMDAMNTV 62
E +A +++SAQ++ +T++L+ + +++ E + +++N V
Sbjct: 218 ELEAKDSVSAQLSAITNMLKNLQCFTDVKEVKTTSLACLLCQGNHHESECPTNHESINFV 277
Query: 63 N--ATTSNNPYSKTYNLGWRNHPNFGWGGNQSQTQGTGQQPQRSNNP-VYNQGVQGHQAQ 122
SNNPYS TYN GWR HPNF WG + + Q N P Y + H A
Sbjct: 278 GNYNRCSNNPYSNTYNTGWRQHPNFSWGNQGAHNANQPTRQQNHNEPQSYQNAMPWHNAN 337
Query: 123 RNESANSSSSSLKALIRQTITKNEETLKSLEAMLQNQMGEIKSH 144
+ S+ +S SSL+A I++ I+ + L+ ++NQ + H
Sbjct: 338 KGASSLASISSLEATIQEFISTTKTKLQDHSTSIKNQGALLHKH 381
BLAST of Clc03G09860.1 vs. ExPASy TrEMBL
Match:
A0A6J1EEI2 (uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC111433394 PE=4 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 49/189 (25.93%), Postives = 86/189 (45.50%), Query Frame = 0
Query: 1 MIETDATNNLSAQIANMTSLLQTIALNNQGEAAVSMDAMNTVNATTS------------- 60
++E DA ++++AQ+A++T++LQ +AL + + +N T +
Sbjct: 272 VLEVDALSSINAQLASVTNILQNLALGQDSMIKAPVHTVAVINQTAAESCVYCGEEHTFD 331
Query: 61 ----------------------NNPYSKTYNLGWRNHPNFGWGGNQSQTQGTGQQPQRSN 120
NNP+S TYN GWRNHPNF W G S Q Q P ++N
Sbjct: 332 QCPSNPASIFYVGNQASQGNPKNNPFSNTYNPGWRNHPNFSWKGQGSYNQ---QMPPKAN 391
Query: 121 NPVYNQGVQGHQAQRNESANSS-----------SSSLKALIRQTITKNEETLKSLEAMLQ 144
P G+Q A ++ N+ +S+++LI++ + KN+ +++ +A L+
Sbjct: 392 YPP-GFGLQNQLAYSSQQVNTQGKGIPQAQYTLGTSIESLIKEYMAKNDVVIQNQQASLR 451
BLAST of Clc03G09860.1 vs. ExPASy TrEMBL
Match:
A0A2Z6MHA8 (Retrotrans_gag domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_315860 PE=4 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 2.6e-05
Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = 0
Query: 35 SMDAMNTVNATTSNNPYSKTYNLGWRNHPNFGWGGNQSQTQGTGQQPQRSNNPVYNQGVQ 94
+M N + T+NNPYS TYN GWRNHPNFGWGGNQ+Q+Q Q P +++ P ++
Sbjct: 323 AMYLSNFKKSNTTNNPYSNTYNPGWRNHPNFGWGGNQNQSQ--QQAPSQNSQPRQQSPLE 382
Query: 95 GHQAQRNESANSSSSSLKALIRQTITKNEETLKSLEAMLQNQMGEIKS 143
AQ + + +K Q E+ + + +N IKS
Sbjct: 383 DALAQFIKVTQGNFEEMKISQNQLKANQEQMKVNQDIANKNHEASIKS 428
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
WP_217833202.1 | 6.4e-30 | 56.02 | hypothetical protein, partial [Synechococcus sp. PCC 7002] | [more] |
XP_038902511.1 | 5.6e-10 | 35.20 | uncharacterized protein LOC120089170 [Benincasa hispida] | [more] |
XP_030503898.1 | 6.2e-09 | 33.11 | uncharacterized protein LOC115719117 [Cannabis sativa] | [more] |
XP_024933238.1 | 1.5e-07 | 35.25 | LOW QUALITY PROTEIN: uncharacterized protein LOC112492876, partial [Ziziphus juj... | [more] |
XP_038895768.1 | 2.6e-07 | 32.76 | uncharacterized protein LOC120083932 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6P6GGJ1 | 7.4e-08 | 35.25 | LOW QUALITY PROTEIN: uncharacterized protein LOC112492876 OS=Ziziphus jujuba OX=... | [more] |
A0A6A3BRM8 | 1.6e-05 | 28.76 | Reverse transcriptase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00109972pilonHS... | [more] |
A0A6A2WPT7 | 2.0e-05 | 28.05 | LRRNT_2 domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig001... | [more] |
A0A6J1EEI2 | 2.0e-05 | 25.93 | uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC1114333... | [more] |
A0A2Z6MHA8 | 2.6e-05 | 36.11 | Retrotrans_gag domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TS... | [more] |
Match Name | E-value | Identity | Description | |