Clc03G01680.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc03G01680.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type domain-containing protein
Location	ClcChr03: 1419553 .. 1420002 (-)
Sequence length	450
RNA-Seq Expression	Clc03G01680.1
Synteny	Clc03G01680.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCGCCGCCGTTTGTCGCCGCTTCACCGGCACCAATCAGAGTTGTCGCCGCCACTTTTGAACTGACTTTGGAGGATAAGTATTTGGCTGTGACAGTCATTTTCACCTTGATTATTCTATACTTCATCGCCTTCAGTTACTACTACAAAACCAGAAATAATGAATCAGAATCCGCCATTGCGGCGGCCGGACCATTGCCGGCGTTGCGGGAGCCGAAGATTGTAAAGATTGAGGCCATGGTTTTCAGTTACAAGGAAGGTAGGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGAAGGCCAAAAGTGTCGATTGATGAAAAAGTGTGGCCATAGATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGTGGAACAACAATGCCCGCTTTGTCGGAGCTGCGTTTGCGTCGTTATAAAACCATAA

mRNA sequence

ATGTCATCGCCGCCGTTTGTCGCCGCTTCACCGGCACCAATCAGAGTTGTCGCCGCCACTTTTGAACTGACTTTGGAGGATAAGTATTTGGCTGTGACAGTCATTTTCACCTTGATTATTCTATACTTCATCGCCTTCAGTTACTACTACAAAACCAGAAATAATGAATCAGAATCCGCCATTGCGGCGGCCGGACCATTGCCGGCGTTGCGGGAGCCGAAGATTGTAAAGATTGAGGCCATGGTTTTCAGTTACAAGGAAGGTAGGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGAAGGCCAAAAGTGTCGATTGATGAAAAAGTGTGGCCATAGATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGTGGAACAACAATGCCCGCTTTGTCGGAGCTGCGTTTGCGTCGTTATAAAACCATAA

Coding sequence (CDS)

ATGTCATCGCCGCCGTTTGTCGCCGCTTCACCGGCACCAATCAGAGTTGTCGCCGCCACTTTTGAACTGACTTTGGAGGATAAGTATTTGGCTGTGACAGTCATTTTCACCTTGATTATTCTATACTTCATCGCCTTCAGTTACTACTACAAAACCAGAAATAATGAATCAGAATCCGCCATTGCGGCGGCCGGACCATTGCCGGCGTTGCGGGAGCCGAAGATTGTAAAGATTGAGGCCATGGTTTTCAGTTACAAGGAAGGTAGGGGAAGTGAGAATGATGATTATGAATGTGTGATTTGCTTGAACCAATTTAAAGAAGGCCAAAAGTGTCGATTGATGAAAAAGTGTGGCCATAGATTTCACCGGAGCTGCATCGACCGGTGGCTCATGGTGGAACAACAATGCCCGCTTTGTCGGAGCTGCGTTTGCGTCGTTATAAAACCATAA

Protein sequence

MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALREPKIVKIEAMVFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP

Homology

[Close]

BLAST of Clc03G01680.1 vs. NCBI nr
Match: XP_008457571.1 (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >TYJ97408.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-38
Identity = 90/163 (55.21%), Postives = 112/163 (68.71%), Query Frame = 0


Query: 1   MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---S 60
           MSSP ++AASP P+  + A F     D Y  V  I   II+YFI+F+ Y+KT NN+    
Sbjct: 1   MSSPAYIAASPMPMNGIEALF-----DDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSD 60

Query: 61  ESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGSEN-----DDYECVICLNQFK 120
           +S +     LPA RE       +IV+IEAMVFSY+E + SEN     DDYECVICLN+F+
Sbjct: 61  QSDVGTVEELPAFRERVVRDQQEIVQIEAMVFSYREAKRSENDDDDDDDYECVICLNKFE 120

Query: 121 EGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP 150
           + QKCR MKKCGH FHRSCIDRWL  E++CPLCR+CVCVV+KP
Sbjct: 121 DAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]

BLAST of Clc03G01680.1 vs. NCBI nr
Match: KAA0067735.1 (RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-38
Identity = 90/164 (54.88%), Postives = 112/164 (68.29%), Query Frame = 0


Query: 1   MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---S 60
           MSSP ++AASP P+  + A F     D Y  V  I   II+YFI+F+ Y+KT NN+    
Sbjct: 1   MSSPAYIAASPMPMNGIEALF-----DDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSD 60

Query: 61  ESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGSEN------DDYECVICLNQF 120
           +S +     LPA RE       +IV+IEAMVFSY+E + SEN      DDYECVICLN+F
Sbjct: 61  QSDVGTVEELPAFRERVVRDQQEIVQIEAMVFSYREAKRSENDDDDDDDDYECVICLNKF 120

Query: 121 KEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP 150
           ++ QKCR MKKCGH FHRSCIDRWL  E++CPLCR+CVCVV+KP
Sbjct: 121 EDAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 159

[Close]

BLAST of Clc03G01680.1 vs. NCBI nr
Match: XP_004151032.1 (RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 2.2e-38
Identity = 88/152 (57.89%), Postives = 109/152 (71.71%), Query Frame = 0


Query: 1   MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESE-S 60
           MS PP++AASP P       FE   +D  L   + F  II+YF++F++Y+KT NNESE  
Sbjct: 1   MSPPPYIAASPMPTN----GFEAIFDDFELLAAICFA-IIVYFLSFTFYFKTGNNESEFD 60

Query: 61  AIAAAGPLPALREPKIVKIEAMVFS-YKEGRGSEN-DDYECVICLNQFKEGQKCRLMKKC 120
                  LP  RE +IV+IE MVFS Y+E +GSEN DDYECVICLN+F++GQKC+ MKKC
Sbjct: 61  TGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKC 120

Query: 121 GHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP 150
           GH FH SCIDRWL  E++CPLCRSCVCVV+ P
Sbjct: 121 GHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147

[Close]

BLAST of Clc03G01680.1 vs. NCBI nr
Match: XP_023524567.1 (RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 6.7e-35
Identity = 82/149 (55.03%), Postives = 100/149 (67.11%), Query Frame = 0


Query: 1   MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESESA 60
           M SPP  AASP PI  +  T+ L   +  LAV  I  LIILY I  +++     +E ES 
Sbjct: 1   MPSPPSFAASPPPISAIVETYGLRWTNNNLAVIAICFLIILYLILLNFF----KSELESG 60

Query: 61  IAAAGPLPALREPKIVKIEAMVFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHR 120
              AG LP +REP+IV+IEA VFSYKE  G  +D  EC ICL++F++ QKCR M KCGH 
Sbjct: 61  SDPAGALPVVREPEIVRIEASVFSYKEADGGHDD--ECAICLDEFEDAQKCRKMNKCGHI 120

Query: 121 FHRSCIDRWLMVEQQCPLCRSCVCVVIKP 150
           FHR CIDRWL V++ CPLCRSCVCVV+ P
Sbjct: 121 FHRRCIDRWLKVDRHCPLCRSCVCVVVHP 143

[Close]

BLAST of Clc03G01680.1 vs. NCBI nr
Match: XP_022998666.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-34
Identity = 80/149 (53.69%), Postives = 100/149 (67.11%), Query Frame = 0


Query: 1   MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESESA 60
           M  PP  AASP PI  +  T+ L   +  LA+  I  LIILY I  +++     +E ES 
Sbjct: 1   MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESG 60

Query: 61  IAAAGPLPALREPKIVKIEAMVFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHR 120
              AG LP +REP+IV+IEA VFSY+E  G  +D  EC ICL++F++GQKCR M KCGH 
Sbjct: 61  SEPAGALPVVREPEIVRIEASVFSYREADGGHDD--ECAICLDEFEDGQKCRKMNKCGHI 120

Query: 121 FHRSCIDRWLMVEQQCPLCRSCVCVVIKP 150
           FHR CIDRWL V++ CPLCRSCVCVV+ P
Sbjct: 121 FHRRCIDRWLKVDRHCPLCRSCVCVVVHP 143

[Close]

BLAST of Clc03G01680.1 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 82  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRS 141
           V  +K+G G   D  EC +CLN+F+E +  RL+ KC H FH +CID WL+  + CPLCR+
Sbjct: 120 VVGFKKGEGI-IDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRA 179

Query: 142 CVCVVIKP 150
            V ++ +P
Sbjct: 180 PVLLITEP 186

[Close]

BLAST of Clc03G01680.1 vs. ExPASy Swiss-Prot
Match: Q9M0R7 (RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.4e-12
Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 33  TVIFTLIILYFIAF---SYYY-KTRNNESESAIAAAGPLPALREPKIVKIEAM----VFS 92
           T++F    + FIAF   +YY  + RN  + +       +   R P+ +  EA+     F 
Sbjct: 10  TIVFAFASIGFIAFYIINYYIRRCRNRAAAAGDIEEARMSPRRPPRGLDAEAIKSFPSFV 69

Query: 93  YKEGRGSEN--DDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSC 144
           Y E RG E    + ECV+CLN+FK+ +  RL+  C H FH  C+D WL     CP+CR+ 
Sbjct: 70  YTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAK 129

[Close]

BLAST of Clc03G01680.1 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-11
Identity = 39/137 (28.47%), Postives = 66/137 (48.18%), Query Frame = 0


Query: 27  DKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALR----EPKIVKIEAMV 86
           D  +A+T+   L+ L+F+ F   Y     +S S+      +P  R     P+ +    +V
Sbjct: 47  DSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTRSSRMSPRRLSTSVVV 106

Query: 87  ---FSYKEG---------------RGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRS 142
              +S++ G               + ++  + +CVICL+ F+EG+  +++  CGH FH  
Sbjct: 107 SRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVD 166

[Close]

BLAST of Clc03G01680.1 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-11
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 82  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRS 141
           V+ YK G G   D  +C +CL++F+E +  RL+ KC H FH  CID WL     CPLCR+
Sbjct: 127 VYKYKSGDGFV-DGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 186

Query: 142 CVCVVIKP 150
            V  V  P
Sbjct: 187 FVTGVNNP 193

[Close]

BLAST of Clc03G01680.1 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.0e-11
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 82  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCR 141
           VF YKE +G++ + ++C +CL +F E  K RL+  C H FH  CID WL+    CPLCR
Sbjct: 129 VFLYKEIKGTK-EPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCR 186

[Close]

BLAST of Clc03G01680.1 vs. ExPASy TrEMBL
Match: A0A5D3BGV5 (RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002280 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.3e-39
Identity = 90/163 (55.21%), Postives = 112/163 (68.71%), Query Frame = 0


Query: 1   MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---S 60
           MSSP ++AASP P+  + A F     D Y  V  I   II+YFI+F+ Y+KT NN+    
Sbjct: 1   MSSPAYIAASPMPMNGIEALF-----DDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSD 60

Query: 61  ESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGSEN-----DDYECVICLNQFK 120
           +S +     LPA RE       +IV+IEAMVFSY+E + SEN     DDYECVICLN+F+
Sbjct: 61  QSDVGTVEELPAFRERVVRDQQEIVQIEAMVFSYREAKRSENDDDDDDDYECVICLNKFE 120

Query: 121 EGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP 150
           + QKCR MKKCGH FHRSCIDRWL  E++CPLCR+CVCVV+KP
Sbjct: 121 DAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]

BLAST of Clc03G01680.1 vs. ExPASy TrEMBL
Match: A0A1S3C6H7 (RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103497236 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.3e-39
Identity = 90/163 (55.21%), Postives = 112/163 (68.71%), Query Frame = 0


Query: 1   MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---S 60
           MSSP ++AASP P+  + A F     D Y  V  I   II+YFI+F+ Y+KT NN+    
Sbjct: 1   MSSPAYIAASPMPMNGIEALF-----DDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSD 60

Query: 61  ESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGSEN-----DDYECVICLNQFK 120
           +S +     LPA RE       +IV+IEAMVFSY+E + SEN     DDYECVICLN+F+
Sbjct: 61  QSDVGTVEELPAFRERVVRDQQEIVQIEAMVFSYREAKRSENDDDDDDDYECVICLNKFE 120

Query: 121 EGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP 150
           + QKCR MKKCGH FHRSCIDRWL  E++CPLCR+CVCVV+KP
Sbjct: 121 DAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]

BLAST of Clc03G01680.1 vs. ExPASy TrEMBL
Match: A0A5A7VPW6 (RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00550 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 8.3e-39
Identity = 90/164 (54.88%), Postives = 112/164 (68.29%), Query Frame = 0


Query: 1   MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNE---S 60
           MSSP ++AASP P+  + A F     D Y  V  I   II+YFI+F+ Y+KT NN+    
Sbjct: 1   MSSPAYIAASPMPMNGIEALF-----DDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSD 60

Query: 61  ESAIAAAGPLPALRE------PKIVKIEAMVFSYKEGRGSEN------DDYECVICLNQF 120
           +S +     LPA RE       +IV+IEAMVFSY+E + SEN      DDYECVICLN+F
Sbjct: 61  QSDVGTVEELPAFRERVVRDQQEIVQIEAMVFSYREAKRSENDDDDDDDDYECVICLNKF 120

Query: 121 KEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP 150
           ++ QKCR MKKCGH FHRSCIDRWL  E++CPLCR+CVCVV+KP
Sbjct: 121 EDAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 159

[Close]

BLAST of Clc03G01680.1 vs. ExPASy TrEMBL
Match: A0A0A0LXE1 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G515480 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 88/152 (57.89%), Postives = 109/152 (71.71%), Query Frame = 0


Query: 1   MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESE-S 60
           MS PP++AASP P       FE   +D  L   + F  II+YF++F++Y+KT NNESE  
Sbjct: 1   MSPPPYIAASPMPTN----GFEAIFDDFELLAAICFA-IIVYFLSFTFYFKTGNNESEFD 60

Query: 61  AIAAAGPLPALREPKIVKIEAMVFS-YKEGRGSEN-DDYECVICLNQFKEGQKCRLMKKC 120
                  LP  RE +IV+IE MVFS Y+E +GSEN DDYECVICLN+F++GQKC+ MKKC
Sbjct: 61  TGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKC 120

Query: 121 GHRFHRSCIDRWLMVEQQCPLCRSCVCVVIKP 150
           GH FH SCIDRWL  E++CPLCRSCVCVV+ P
Sbjct: 121 GHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147

[Close]

BLAST of Clc03G01680.1 vs. ExPASy TrEMBL
Match: A0A6J1KAT3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111493250 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.2e-34
Identity = 80/149 (53.69%), Postives = 100/149 (67.11%), Query Frame = 0


Query: 1   MSSPPFVAASPAPIRVVAATFELTLEDKYLAVTVIFTLIILYFIAFSYYYKTRNNESESA 60
           M  PP  AASP PI  +  T+ L   +  LA+  I  LIILY I  +++     +E ES 
Sbjct: 1   MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESG 60

Query: 61  IAAAGPLPALREPKIVKIEAMVFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHR 120
              AG LP +REP+IV+IEA VFSY+E  G  +D  EC ICL++F++GQKCR M KCGH 
Sbjct: 61  SEPAGALPVVREPEIVRIEASVFSYREADGGHDD--ECAICLDEFEDGQKCRKMNKCGHI 120

Query: 121 FHRSCIDRWLMVEQQCPLCRSCVCVVIKP 150
           FHR CIDRWL V++ CPLCRSCVCVV+ P
Sbjct: 121 FHRRCIDRWLKVDRHCPLCRSCVCVVVHP 143

[Close]

BLAST of Clc03G01680.1 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 9.1e-14
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 82  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRS 141
           V  +K+G G   D  EC +CLN+F+E +  RL+ KC H FH +CID WL+  + CPLCR+
Sbjct: 120 VVGFKKGEGI-IDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRA 179

Query: 142 CVCVVIKP 150
            V ++ +P
Sbjct: 180 PVLLITEP 186

[Close]

BLAST of Clc03G01680.1 vs. TAIR 10
Match: AT4G09100.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-13
Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 33  TVIFTLIILYFIAF---SYYY-KTRNNESESAIAAAGPLPALREPKIVKIEAM----VFS 92
           T++F    + FIAF   +YY  + RN  + +       +   R P+ +  EA+     F 
Sbjct: 10  TIVFAFASIGFIAFYIINYYIRRCRNRAAAAGDIEEARMSPRRPPRGLDAEAIKSFPSFV 69

Query: 93  YKEGRGSEN--DDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRSC 144
           Y E RG E    + ECV+CLN+FK+ +  RL+  C H FH  C+D WL     CP+CR+ 
Sbjct: 70  YTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAK 129

[Close]

BLAST of Clc03G01680.1 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-12
Identity = 39/137 (28.47%), Postives = 66/137 (48.18%), Query Frame = 0


Query: 27  DKYLAVTVIFTLIILYFIAFSYYYKTRNNESESAIAAAGPLPALR----EPKIVKIEAMV 86
           D  +A+T+   L+ L+F+ F   Y     +S S+      +P  R     P+ +    +V
Sbjct: 47  DSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTRSSRMSPRRLSTSVVV 106

Query: 87  ---FSYKEG---------------RGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRS 142
              +S++ G               + ++  + +CVICL+ F+EG+  +++  CGH FH  
Sbjct: 107 SRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVD 166

[Close]

BLAST of Clc03G01680.1 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-12
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 82  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCRS 141
           V+ YK G G   D  +C +CL++F+E +  RL+ KC H FH  CID WL     CPLCR+
Sbjct: 127 VYKYKSGDGFV-DGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 186

Query: 142 CVCVVIKP 150
            V  V  P
Sbjct: 187 FVTGVNNP 193

[Close]

BLAST of Clc03G01680.1 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.0e-12
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 82  VFSYKEGRGSENDDYECVICLNQFKEGQKCRLMKKCGHRFHRSCIDRWLMVEQQCPLCR 141
           VF YKE +G++ + ++C +CL +F E  K RL+  C H FH  CID WL+    CPLCR
Sbjct: 129 VFLYKEIKGTK-EPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCR 186

The following BLAST results are available for this feature:

BLAST of Clc03G01680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457571.1	1.3e-38	55.21	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >TYJ97408.1 RING-H2 ...	[more]
KAA0067735.1	1.7e-38	54.88	RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa]	[more]
XP_004151032.1	2.2e-38	57.89	RING-H2 finger protein ATL66 [Cucumis sativus]	[more]
XP_023524567.1	6.7e-35	55.03	RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998666.1	2.6e-34	53.69	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]

BLAST of Clc03G01680.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX93	1.3e-12	45.59	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q9M0R7	6.4e-12	35.54	RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1	[more]
Q9SJJ7	3.2e-11	28.47	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]
Q9LF64	4.1e-11	45.59	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q8GW38	7.0e-11	47.46	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]

BLAST of Clc03G01680.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGV5	6.3e-39	55.21	RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C6H7	6.3e-39	55.21	RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103497236 PE=4 S...	[more]
A0A5A7VPW6	8.3e-39	54.88	RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A0A0LXE1	1.1e-38	57.89	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G515480 P...	[more]
A0A6J1KAT3	1.2e-34	53.69	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111493250 P...	[more]

BLAST of Clc03G01680.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10380.1	9.1e-14	45.59	RING/U-box superfamily protein	[more]
AT4G09100.1	4.5e-13	35.54	RING/U-box superfamily protein	[more]
AT2G27940.1	2.2e-12	28.47	RING/U-box superfamily protein	[more]
AT5G17600.1	2.9e-12	45.59	RING/U-box superfamily protein	[more]
AT1G23980.1	5.0e-12	47.46	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 98..139 e-value: 1.2E-7 score: 41.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 97..140 e-value: 2.8E-14 score: 53.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 98..140 score: 13.13841
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 65..144 e-value: 6.8E-20 score: 72.5
None	No IPR available	PANTHER	PTHR14155:SF550	RING-H2 FINGER PROTEIN ATL40	coord: 27..142
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 27..142
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 91..145

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc03G01680	Clc03G01680	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc03G01680.1-exon	Clc03G01680.1-exon-ClcChr03:1419553..1420002	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc03G01680.1-cds	Clc03G01680.1-cds-ClcChr03:1419553..1420002	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc03G01680.1	Clc03G01680.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane