Clc02G13750.2 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc02G13750.2
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Thioredoxin-like protein YLS8
Location	ClcChr02: 25977378 .. 25978511 (-)
Sequence length	429
RNA-Seq Expression	Clc02G13750.2
Synteny	Clc02G13750.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTACTTGCTGCCACATCTTCATTCTGGATGGGCTGTTGACCAGGCAATCCTCGCTGAAGAAGAACGGCTTGTGGTCATTCGTTTCGGTCATGACTGGGACGAAACTTGTATGCAGGTCTTTCTCTTTCCCTCTTCATAATCTTCTCTCCCTCTTTCTCCATATTACTATTCATCATAATGTTGACCTTGTTCTGTACATCACTCAACTTCCTTTTTCTTCTTGCTTCCAGTGAACTGAATGTATCCTTTTGTGGCTTTTAATTTCACAAAACAAGTCTCTTTTTTAGTTCTGCAAATCTTGAAGTCTTGATCTGTCAGGGTCCCTCCCCAGTACTTTCTAATTTTGGATAGTGTTTTGAATGTTTGCTTGTGTGAATCGATCTAATTTCTTAAAGAGTTCTATTGATGAAGTTTTCCTTTATTGTGTAAAATACCATTTTTTGTGCAGTCATTAGAAATTGATCTGTTTTTATATTCATTTGTATCTATTGTATTTTTTTTTGTGTTTGCTTCTCTATTATCATCATGTACTCTGTTGCAACTGTGCTCCTGAAACGTTTTCTGTGATCATACATTCCTACGCGTTTTTTAGCACATCAATCGTAGTATGTATTAGAGATGAAGTTCCTTCAGCATAGTTGTTATGAAATGGCCTTTTTTGATGTGTGAAGCTACATGTGACCACAGTTCTTCCATCTTACATGTTATAGATTGAAAAGATCTGTATTTTATTCCCATTTATAATTTTATATGGTTGGTTTATTAGTCACCTTTGTCCTTTCTTGAGATGCTTTATCTGATTGAGATGCTTTTGATCTAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACGATTAAGAACTTTGCTGTAATATACCTTGTGGATATCACAGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGAAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAGATAAACTGGGCACTTAAGGATAAGCAGGAGTTCATTGATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGGGGTTTAGTCATTGCACCTAAGGACTATTCGACCAAATATCGCTACTAA

mRNA sequence

ATGTCGTACTTGCTGCCACATCTTCATTCTGGATGGGCTGTTGACCAGGCAATCCTCGCTGAAGAAGAACGGCTTGTGGTCATTCGTTTCGGTCATGACTGGGACGAAACTTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACGATTAAGAACTTTGCTGTAATATACCTTGTGGATATCACAGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGAAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAGATAAACTGGGCACTTAAGGATAAGCAGGAGTTCATTGATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGGGGTTTAGTCATTGCACCTAAGGACTATTCGACCAAATATCGCTACTAA

Coding sequence (CDS)

ATGTCGTACTTGCTGCCACATCTTCATTCTGGATGGGCTGTTGACCAGGCAATCCTCGCTGAAGAAGAACGGCTTGTGGTCATTCGTTTCGGTCATGACTGGGACGAAACTTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACGATTAAGAACTTTGCTGTAATATACCTTGTGGATATCACAGAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGAAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAGATAAACTGGGCACTTAAGGATAAGCAGGAGTTCATTGATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGGGGTTTAGTCATTGCACCTAAGGACTATTCGACCAAATATCGCTACTAA

Protein sequence

MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

Homology

[Close]

BLAST of Clc02G13750.2 vs. NCBI nr
Match: MBA0750948.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 36  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 95

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 96  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 155

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 156 RGARKGRGLVIAPKDYSTKYRY 177

[Close]

BLAST of Clc02G13750.2 vs. NCBI nr
Match: XP_040967487.1 (thioredoxin-like protein YLS8 [Gossypium hirsutum] >KAG4205497.1 hypothetical protein ERO13_A04G108600v2 [Gossypium hirsutum])

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 66  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 125

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 126 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 185

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 186 RGARKGRGLVIAPKDYSTKYRY 207

[Close]

BLAST of Clc02G13750.2 vs. NCBI nr
Match: XP_004148041.1 (thioredoxin-like protein YLS8 [Cucumis sativus] >XP_004497782.1 thioredoxin-like protein YLS8 isoform X2 [Cicer arietinum] >XP_006288859.1 thioredoxin-like protein YLS8 [Capsella rubella] >XP_006399318.1 thioredoxin-like protein YLS8 [Eutrema salsugineum] >XP_008457801.1 PREDICTED: thioredoxin-like protein YLS8 [Cucumis melo] >XP_010452811.1 PREDICTED: thioredoxin-like protein YLS8 [Camelina sativa] >XP_010491455.1 PREDICTED: thioredoxin-like protein YLS8 [Camelina sativa] >XP_012459864.1 PREDICTED: thioredoxin-like protein YLS8 [Gossypium raimondii] >XP_015894288.1 thioredoxin-like protein YLS8 [Ziziphus jujuba] >XP_015961428.1 thioredoxin-like protein YLS8 isoform X1 [Arachis duranensis] >XP_015961429.1 thioredoxin-like protein YLS8 isoform X1 [Arachis duranensis] >XP_016198827.1 thioredoxin-like protein YLS8 isoform X1 [Arachis ipaensis] >XP_016198828.1 thioredoxin-like protein YLS8 isoform X1 [Arachis ipaensis] >XP_016198829.1 thioredoxin-like protein YLS8 isoform X1 [Arachis ipaensis] >XP_016198830.1 thioredoxin-like protein YLS8 isoform X1 [Arachis ipaensis] >XP_016198831.1 thioredoxin-like protein YLS8 isoform X1 [Arachis ipaensis] >XP_017612852.1 PREDICTED: thioredoxin-like protein YLS8 [Gossypium arboreum] >XP_019420159.1 PREDICTED: thioredoxin-like protein YLS8 [Lupinus angustifolius] >XP_019439280.1 PREDICTED: thioredoxin-like protein YLS8 [Lupinus angustifolius] >XP_021632944.1 thioredoxin-like protein YLS8 [Manihot esculenta] >XP_021674120.1 thioredoxin-like protein YLS8 [Hevea brasiliensis] >XP_021674917.1 thioredoxin-like protein YLS8 [Hevea brasiliensis] >XP_022139323.1 thioredoxin-like protein YLS8 isoform X1 [Momordica charantia] >XP_022153368.1 thioredoxin-like protein YLS8 [Momordica charantia] >XP_022153369.1 thioredoxin-like protein YLS8 [Momordica charantia] >XP_022927978.1 thioredoxin-like protein YLS8 [Cucurbita moschata] >XP_022927979.1 thioredoxin-like protein YLS8 [Cucurbita moschata] >XP_022971679.1 thioredoxin-like protein YLS8 [Cucurbita maxima] >XP_022971680.1 thioredoxin-like protein YLS8 [Cucurbita maxima] >XP_023513106.1 thioredoxin-like protein YLS8 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513107.1 thioredoxin-like protein YLS8 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513108.1 thioredoxin-like protein YLS8 isoform X1 [Cucurbita pepo subsp. pepo] >XP_024007091.1 thioredoxin-like protein YLS8 [Eutrema salsugineum] >XP_025649101.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_025649102.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_025649103.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_025649104.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_025695902.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_025695903.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_028767038.1 thioredoxin-like protein YLS8 [Prosopis alba] >XP_028787801.1 thioredoxin-like protein YLS8 [Prosopis alba] >XP_029153776.1 thioredoxin-like protein YLS8 [Arachis hypogaea] >XP_031737353.1 thioredoxin-like protein YLS8 [Cucumis sativus] >XP_038902874.1 thioredoxin-like protein YLS8 [Benincasa hispida] >XP_038902875.1 thioredoxin-like protein YLS8 [Benincasa hispida] >XP_039013197.1 thioredoxin-like protein YLS8 [Hibiscus syriacus] >XP_039019395.1 thioredoxin-like protein YLS8 [Hibiscus syriacus] >XP_039047757.1 thioredoxin-like protein YLS8 [Hibiscus syriacus] >XP_039137675.1 thioredoxin-like protein YLS8 [Dioscorea cayenensis subsp. rotundata] >AGH25793.1 YLS8 [Gossypium hirsutum] >KAA3463630.1 thioredoxin-like protein YLS8 [Gossypium australe] >KAB2035695.1 hypothetical protein ES319_D04G171200v1 [Gossypium barbadense] >KAE9594226.1 putative Dim1 family, thioredoxin-like protein [Lupinus albus] >KAG6571422.1 Thioredoxin-like protein YLS8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011188.1 Thioredoxin-like protein YLS8, partial [Cucurbita argyrosperma subsp. argyrosperma] >MBA0630926.1 hypothetical protein [Gossypium davidsonii] >MBA0666643.1 hypothetical protein [Gossypium klotzschianum] >OVA18434.1 mRNA splicing factor [Macleaya cordata] >RWR92604.1 thioredoxin-like protein YLS8 [Cinnamomum micranthum f. kanehirae] >TYG74413.1 hypothetical protein ES288_D04G181300v1 [Gossypium darwinii] >TYH77829.1 hypothetical protein ES332_D04G182700v1 [Gossypium tomentosum] >TYI87952.1 hypothetical protein E1A91_D04G173100v1 [Gossypium mustelinum] >CAA2627361.1 unnamed protein product [Spirodela intermedia] >CAA7027004.1 unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Clc02G13750.2 vs. NCBI nr
Match: KAA0045799.1 (Thioredoxin-like protein YLS8 [Cucumis melo var. makuwa])

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 20  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 79

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 80  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 139

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 140 RGARKGRGLVIAPKDYSTKYRY 161

[Close]

BLAST of Clc02G13750.2 vs. NCBI nr
Match: KJB77370.1 (hypothetical protein B456_012G134400 [Gossypium raimondii])

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 66  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 125

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 126 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 185

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 186 RGARKGRGLVIAPKDYSTKYRY 207

[Close]

BLAST of Clc02G13750.2 vs. ExPASy Swiss-Prot
Match: Q9FE62 (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=1 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 4.4e-79
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Clc02G13750.2 vs. ExPASy Swiss-Prot
Match: P83876 (Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.4e-71
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]

BLAST of Clc02G13750.2 vs. ExPASy Swiss-Prot
Match: P83877 (Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.4e-71
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]

BLAST of Clc02G13750.2 vs. ExPASy Swiss-Prot
Match: P87215 (Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dim1 PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-61
Identity = 109/142 (76.76%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY LPHLHSGW VDQAIL+E+ERLVVIRFG D DE C++ DEVL  +AE + N AVIYL
Sbjct: 1   MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW L+DKQE IDIIET++
Sbjct: 61  VDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKG+GLVI+PKDYST++RY
Sbjct: 121 RGARKGKGLVISPKDYSTRHRY 142

[Close]

BLAST of Clc02G13750.2 vs. ExPASy Swiss-Prot
Match: Q75BD8 (Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=DIB1 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.3e-51
Identity = 93/138 (67.39%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 2   SYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLV 61
           S  LPHLHSGW VDQAI+ EEERLVVIRFG D D +CM MDE+L S+AE + NFA IY+ 
Sbjct: 3   SVFLPHLHSGWHVDQAIVTEEERLVVIRFGSDSDRSCMLMDEILYSIAEKVVNFAAIYVC 62

Query: 62  DITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYR 121
           D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK+N+ + +KQE IDIIETV+R
Sbjct: 63  DTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVFR 122

Query: 122 GARKGRGLVIAPKDYSTK 140
           GAR+ +GLV++P DY+ K
Sbjct: 123 GARRNKGLVVSPYDYNYK 140

[Close]

BLAST of Clc02G13750.2 vs. ExPASy TrEMBL
Match: S4U0X2 (YLS8 OS=Gossypium hirsutum OX=3635 GN=LOC107944993 PE=2 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.3e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Clc02G13750.2 vs. ExPASy TrEMBL
Match: A0A7I8L052 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_10013014 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.3e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Clc02G13750.2 vs. ExPASy TrEMBL
Match: A0A6J1I6E9 (thioredoxin-like protein YLS8 OS=Cucurbita maxima OX=3661 GN=LOC111470351 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.3e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Clc02G13750.2 vs. ExPASy TrEMBL
Match: A0A6P4D2R7 (thioredoxin-like protein YLS8 isoform X1 OS=Arachis duranensis OX=130453 GN=LOC107485414 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.3e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Clc02G13750.2 vs. ExPASy TrEMBL
Match: A0A0B0MLM5 (Thioredoxin-like protein 4A OS=Gossypium arboreum OX=29729 GN=LOC108458103 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.3e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Clc02G13750.2 vs. TAIR 10
Match: AT5G08290.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 295.0 bits (754), Expect = 3.1e-80
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]

BLAST of Clc02G13750.2 vs. TAIR 10
Match: AT3G24730.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-20
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 0


Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLL  L +   +D+ I    + ++V+RFG   D  C+Q DE+LA     +  FA + L
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 120
           VD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 69  VDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVV 128

Query: 121 ETVYRGARKGRGLVIAP 134
           E +YRGA KG+ +V  P
Sbjct: 129 EAIYRGAMKGKMIVQCP 143

The following BLAST results are available for this feature:

BLAST of Clc02G13750.2 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0750948.1	1.5e-76	100.00	hypothetical protein [Gossypium gossypioides]	[more]
XP_040967487.1	1.5e-76	100.00	thioredoxin-like protein YLS8 [Gossypium hirsutum] >KAG4205497.1 hypothetical pr...	[more]
XP_004148041.1	1.5e-76	100.00	thioredoxin-like protein YLS8 [Cucumis sativus] >XP_004497782.1 thioredoxin-like...	[more]
KAA0045799.1	1.5e-76	100.00	Thioredoxin-like protein YLS8 [Cucumis melo var. makuwa]	[more]
KJB77370.1	1.5e-76	100.00	hypothetical protein B456_012G134400 [Gossypium raimondii]	[more]

BLAST of Clc02G13750.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FE62	4.4e-79	99.30	Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=1 SV=1	[more]
P83876	3.4e-71	85.92	Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1	[more]
P83877	3.4e-71	85.92	Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1	[more]
P87215	1.1e-61	76.76	Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2...	[more]
Q75BD8	2.3e-51	67.39	Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / F...	[more]

BLAST of Clc02G13750.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
S4U0X2	7.3e-77	100.00	YLS8 OS=Gossypium hirsutum OX=3635 GN=LOC107944993 PE=2 SV=1	[more]
A0A7I8L052	7.3e-77	100.00	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_10013014 PE=3 SV...	[more]
A0A6J1I6E9	7.3e-77	100.00	thioredoxin-like protein YLS8 OS=Cucurbita maxima OX=3661 GN=LOC111470351 PE=3 S...	[more]
A0A6P4D2R7	7.3e-77	100.00	thioredoxin-like protein YLS8 isoform X1 OS=Arachis duranensis OX=130453 GN=LOC1...	[more]
A0A0B0MLM5	7.3e-77	100.00	Thioredoxin-like protein 4A OS=Gossypium arboreum OX=29729 GN=LOC108458103 PE=3 ...	[more]

BLAST of Clc02G13750.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08290.1	3.1e-80	99.30	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]
AT3G24730.1	6.2e-20	37.96	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004123	Dim1 family	SMART	SM01410	DIM1_2	coord: 4..136 e-value: 1.4E-97 score: 340.1
IPR004123	Dim1 family	PIRSF	PIRSF017199	Dim1	coord: 1..142 e-value: 5.4E-75 score: 247.6
IPR004123	Dim1 family	PFAM	PF02966	DIM1	coord: 4..136 e-value: 2.3E-67 score: 224.8
IPR004123	Dim1 family	PANTHER	PTHR12052	THIOREDOXIN-LIKE PROTEN 4A, 4B	coord: 1..142
IPR004123	Dim1 family	CDD	cd02954	DIM1	coord: 10..123 e-value: 3.55805E-77 score: 222.555
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..141 e-value: 6.6E-80 score: 267.6
None	No IPR available	PANTHER	PTHR12052:SF9	SUBFAMILY NOT NAMED	coord: 1..142
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 4..137

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc02G13750	Clc02G13750	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc02G13750.2-exon	Clc02G13750.2-exon-ClcChr02:25977378..25977686	exon
Clc02G13750.2-exon	Clc02G13750.2-exon-ClcChr02:25978392..25978511	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc02G13750.2-cds	Clc02G13750.2-cds-ClcChr02:25977378..25977686	CDS
Clc02G13750.2-cds	Clc02G13750.2-cds-ClcChr02:25978392..25978511	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc02G13750.2	Clc02G13750.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0005682	U5 snRNP